Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002696

Physical Location & Seq

Genomic Coordinates Forward (+)

11640735 .. 11643762

Gene Structure 3028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGGTTGCTTTAGCAGCAAACACCGAAACACAGAGAGTGATATCATCAATGGCAGCGTACAGAGCTCAATTCCGACAAATCAACCTGAAAACCATGTCTCTCGTGATGTTCTCAAGCCTCAGAAACCTCCTTCTCCTCAAATTCCGACAACAACCCAATCAAATCATCATCACCAACAAGAATCCAAACCCGTTAATCAGCAAATCGAAAAGAAGCACGTTCTAACACAACCATTGAAACCAATCGTTTTTAGAGAAACAGAGACAATTCTAGGCAAACCCTTTGAAGAAATAAGGAAACTTTACACGTTAGGTAAAGAATTAGGTCGAGGCCAATTTGGTATAACCTACACTTGCAAAGAGAATTCAACAGGCAACACATACGCTTGCAAATCAATACTCAAGAGGAAACTAACGAGAAAGCAAGACATAGATGATGTGAAGAGAGAGATTCAGATAATGCAGTATTTGTCTGGACAAGAGAACATTGTTGAGATCAAAGGTGCTTATGAAGATAGACAATCGATACATTTGGTGATGGAGTTGTGTGGTGGTAGTGAATTGTTCGATAGGATTATAGCTCAAGGACATTACTCTGAGAAAGCAGCTGCTGGTGTTATTAGATCGGTTTTGAATGTTGTTCAGATTTGTCATTTCATGGGAGTGATTCATCGTGATCTCAAGCCTGAGAATTTTCTGCTCGCTAGTACTGATGAGAATGCTATGCTTAAAGCTACTGATTTTGGATTGTCTGTGTTCATTGAAGAAGGGAAAGTTTATAGGGATATAGTAGGAAGTGCTTACTATGTTGCTCCTGAAGTATTAAGAAGAAGTTATGGAAAAGAAATCGATATTTGGAGTGCAGGGATTATTCTATACATCTTGCTTTGTGGTGTGCCTCCTTTTTGGTCTGAAACTGAGAAGGGGATATTTAATGAGATTATAAAGGGAGAAATTGATTTTGATAGCCAACCATGGCCTTCTATATCTGAGAGTGCTAAAGATCTTGTGAGGAAGTTGCTTACTAAGGACCCTAAGCAACGAATCTCAGCGGCACAAGCTCTTGAACATCCTTGGATCAGAGGAGGAGAAGCACCGGACAAGCCTATTGATAGTGCTGTTTTATCTCGGATGAAGCAATTCCGAGCAATGAATAAGCTTAAAAAGCTAGCTCTAAAGGTTATTGCAGAGAGTCTCTCGGAAGAGGAAATTAAAGGTCTTAAAACCATGTTTGCGAATATGGATACTGACAAAAGCGGCACAATCACTTATGAAGAACTGAAAAACGGGCTAGCTAAACTTGGCTCTAAACTCACTGAAGCTGAAGTGAAGCAACTCATGGAAGCCGCTGATGTAGATGGTAATGGAACAATTGACTACATCGAATTTATCTCAGCAACGATGCATAGATACAGATTTGATCGAGATGAACACGTATTCAAAGCCTTCCAATACTTCGACAAAGACAACAGCGGGTTTATCACAATGGATGAGTTGGAGTCAGCCATGAAAGAGTATGGTATGGGAGATGAAGCTAGCATCAAAGAAGTCATAGCGGAAGTCGATACAGATAACGATGGAAGAATAAACTATGAAGAATTTTGTGCGATGATGAGAAGTGGTATCACACTGCCACAACAAGGGAAAATTCTTCCAGTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009751 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

554

Amino Acids

62.57

Weight (kDa)

5.83

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	102 - 360	1.4e-76	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	103 - 353	5.6e-26	Protein tyrosine and serine/threonine kinase
EF-hand_7	PF13499	406 - 467	3.5e-14	EF-hand domain pair
EF-hand_1	PF00036	407 - 434	8.6e-07	EF hand domain
EF-hand_8	PF13833	419 - 467	7.7e-06	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61950 AT4G04710 AT4G04710 AT4G04710 AT4G04710 AT4G04720 AT4G04720 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G21940 AT4G21940 AT4G21940
fragaria_vesca	FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130
malus_domestica	MD05G1345600.v1.1 MD10G1321000.v1.1
prunus_persica	Prupe.4G021300_v2.0.a1
pyrus_communis	pycom11g19140
rosa_chinensis	RchiOBHm_Chr5g0003201
rosa_laevigata	RLG00000031086
rosa_multiflora	Rmu_co8095158.1_g000001 Rmu_co8435131.1_g000001 Rmu_sc0000146.1_g000036
rosa_roxburghii	Rroxscaffold_1G00072810
rosa_rugosa	Rorug04G0401400
rosa_samantha	Rh5AG026300 Rh5BG027500 Rh5CG029100 Rh5DG025900
rosa_wichuraiana	Rw0G023540 Rw5G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	944
AciI	CCGC	5 cut(s)	1052, 1257, 1347, 1473, 1556
AclWI	GGATC	1 cut(s)	1085
AcsI	RAATTY	6 cut(s)	141, 364, 691, 1385, 1598, 1647
AcuI	CTGAAG	3 cut(s)	837, 1338, 1344
AfaI	GTAC	2 cut(s)	60, 709
AfiI	CCNNNNNNNGG	1 cut(s)	1640
AflIII	ACRYGT	2 cut(s)	306, 1432
AgsI	TTSAA	7 cut(s)	238, 287, 369, 634, 764, 1067, 1441
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	103, 257, 1199
AlwI	GGATC	1 cut(s)	1085
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	331, 977
ApeKI	GCWGC	4 cut(s)	15, 54, 605, 608
ApoI	RAATTY	6 cut(s)	141, 364, 691, 1385, 1598, 1647
Asp700I	GAANNNNTTC	1 cut(s)	1139
AspS9I	GGNCC	1 cut(s)	1030
AsuHPI	GGTGA	2 cut(s)	164, 547
AsuNHI	GCTAGC	3 cut(s)	1168, 1291, 1535
AvaII	GGWCC	1 cut(s)	1030
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	4 cut(s)	27, 66, 595, 617
BccI	CCATC	3 cut(s)	532, 1352, 1571
BciVI	GTATCC	1 cut(s)	1237
BcoDI	GTCTC	3 cut(s)	103, 257, 1199
BfaI	CTAG	5 cut(s)	272, 705, 1169, 1292, 1536
BfuI	GTATCC	1 cut(s)	1237
BglII	AGATCT	1 cut(s)	1003
BisI	GCNGC	7 cut(s)	16, 55, 606, 609, 1053, 1258, 1347
BlsI	GCNGC	7 cut(s)	17, 56, 607, 610, 1054, 1259, 1348
BmcAI	AGTACT	1 cut(s)	709
Bme18I	GGWCC	1 cut(s)	1030
BmgT120I	GGNCC	1 cut(s)	1030
BmiI	GGNNCC	1 cut(s)	1032
BmsI	GCATC	2 cut(s)	1392, 1548
BmtI	GCTAGC	3 cut(s)	1172, 1295, 1539
BplI	GAGNNNNNCTC	2 cut(s)	1181, 1213
Bpu10I	CCTNAGC	1 cut(s)	1035
BpuEI	CTTGAG	4 cut(s)	98, 386, 567, 665
Bsa29I	ATCGAT	2 cut(s)	524, 849
BsaAI	YACGTR	1 cut(s)	1435
BsaJI	CCNNGG	2 cut(s)	974, 1073
BsaWI	WCCGGW	1 cut(s)	1096
Bsc4I	CCNNNNNNNGG	1 cut(s)	1640
Bse1I	ACTGG	1 cut(s)	1655
Bse3DI	GCAATG	1 cut(s)	1155
BseCI	ATCGAT	2 cut(s)	524, 849
BseDI	CCNNGG	2 cut(s)	974, 1073
BseGI	GGATG	3 cut(s)	1069, 1137, 1495
BseLI	CCNNNNNNNGG	1 cut(s)	1640
BseMI	GCAATG	1 cut(s)	1155
BseMII	CTCAG	7 cut(s)	134, 588, 678, 909, 981, 1062, 1407
BseNI	ACTGG	1 cut(s)	1655
BseRI	GAGGAG	3 cut(s)	126, 1098, 1101
BseXI	GCAGC	4 cut(s)	27, 66, 595, 617
BsgI	GTGCAG	1 cut(s)	882
BshFI	GGCC	2 cut(s)	333, 979
BshVI	ATCGAT	2 cut(s)	524, 849
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	1097
BslI	CCNNNNNNNGG	1 cut(s)	1640
BsmAI	GTCTC	3 cut(s)	103, 257, 1199
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	333, 979
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	6 cut(s)	495, 623, 676, 1003, 1077, 1420
Bsp19I	CCATGG	1 cut(s)	974
BspACI	CCGC	5 cut(s)	1052, 1257, 1347, 1473, 1556
BspANI	GGCC	2 cut(s)	333, 979
BspCNI	CTCAG	7 cut(s)	133, 589, 679, 910, 982, 1061, 1406
BspDI	ATCGAT	2 cut(s)	524, 849
BspLI	GGNNCC	1 cut(s)	1032
BspOI	GCTAGC	3 cut(s)	1172, 1295, 1539
BspPI	GGATC	1 cut(s)	1085
BsrDI	GCAATG	1 cut(s)	1155
BsrI	ACTGG	1 cut(s)	1655
BssECI	CCNNGG	2 cut(s)	974, 1073
BssMI	GATC	6 cut(s)	495, 623, 676, 1003, 1077, 1420
BssSI	CACGAG	1 cut(s)	102
BssT1I	CCWWGG	2 cut(s)	974, 1073
Bst2BI	CACGAG	1 cut(s)	102
Bst6I	CTCTTC	2 cut(s)	437, 1197
BstBAI	YACGTR	1 cut(s)	1435
BstC8I	GCNNGC	5 cut(s)	388, 702, 1170, 1293, 1537
BstDEI	CTNAG	9 cut(s)	120, 597, 687, 918, 990, 1026, 1035, 1048, 1393
BstDSI	CCRYGG	1 cut(s)	974
BstF5I	GGATG	3 cut(s)	1069, 1137, 1495
BstKTI	GATC	6 cut(s)	498, 626, 679, 1006, 1080, 1423
BstMAI	GTCTC	3 cut(s)	103, 257, 1199
BstMBI	GATC	6 cut(s)	495, 623, 676, 1003, 1077, 1420
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 63, 1058, 1165
BstV1I	GCAGC	4 cut(s)	27, 66, 595, 617
BstX2I	RGATCY	1 cut(s)	1003
BstYI	RGATCY	1 cut(s)	1003
Bsu15I	ATCGAT	2 cut(s)	524, 849
BsuI	GTATCC	1 cut(s)	1237
BsuRI	GGCC	2 cut(s)	333, 979
BsuTUI	ATCGAT	2 cut(s)	524, 849
BtgI	CCRYGG	1 cut(s)	974
BtgZI	GCGATG	1 cut(s)	1622
BtsCI	GGATG	3 cut(s)	1069, 1137, 1495
BtsI	GCAGTG	1 cut(s)	1628
BtsIMutI	CAGTG	2 cut(s)	1314, 1628
Cac8I	GCNNGC	5 cut(s)	388, 702, 1170, 1293, 1537
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	1030
ClaI	ATCGAT	2 cut(s)	524, 849
Csp6I	GTAC	2 cut(s)	59, 708
CviAII	CATG	6 cut(s)	95, 658, 975, 1228, 1339, 1507
CviQI	GTAC	2 cut(s)	59, 708
DdeI	CTNAG	9 cut(s)	120, 597, 687, 918, 990, 1026, 1035, 1048, 1393
DpnI	GATC	6 cut(s)	497, 625, 678, 1005, 1079, 1422
DpnII	GATC	6 cut(s)	495, 623, 676, 1003, 1077, 1420
Eam1104I	CTCTTC	2 cut(s)	437, 1197
EarI	CTCTTC	2 cut(s)	437, 1197
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	974, 1073
Eco24I	GRGCYC	1 cut(s)	68
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	1030
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	3 cut(s)	837, 1338, 1344
EcoICRI	GAGCTC	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	1030
EcoRI	GAATTC	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	43
EcoT14I	CCWWGG	2 cut(s)	974, 1073
EcoT22I	ATGCAT	1 cut(s)	1407
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	2 cut(s)	974, 1073
FaeI	CATG	6 cut(s)	98, 661, 978, 1231, 1342, 1510
FatI	CATG	6 cut(s)	94, 657, 974, 1227, 1338, 1506
FauI	CCCGC	1 cut(s)	1466
Fnu4HI	GCNGC	7 cut(s)	16, 55, 606, 609, 1053, 1258, 1347
FokI	GGATG	3 cut(s)	1056, 1144, 1502
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	7 cut(s)	16, 55, 606, 609, 1053, 1258, 1347
FspBI	CTAG	5 cut(s)	272, 705, 1169, 1292, 1536
GluI	GCNGC	7 cut(s)	16, 55, 606, 609, 1053, 1258, 1347
HaeIII	GGCC	2 cut(s)	333, 979
HapII	CCGG	1 cut(s)	1097
Hin1II	CATG	6 cut(s)	98, 661, 978, 1231, 1342, 1510
HindIII	AAGCTT	1 cut(s)	1157
HinfI	GANTC	6 cut(s)	182, 451, 667, 1044, 1192, 1499
HpaII	CCGG	1 cut(s)	1097
HphI	GGTGA	2 cut(s)	164, 547
Hpy188III	TCNNGA	7 cut(s)	104, 403, 474, 674, 815, 1064, 1424
HpyAV	CCTTC	5 cut(s)	141, 761, 916, 990, 1456
HpyCH4IV	ACGT	3 cut(s)	219, 308, 1434
HpyCH4V	TGCA	6 cut(s)	357, 390, 463, 863, 1187, 1405
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 63, 1058, 1165
HpyF3I	CTNAG	9 cut(s)	120, 597, 687, 918, 990, 1026, 1035, 1048, 1393
HpySE526I	ACGT	3 cut(s)	219, 308, 1434
Hsp92II	CATG	6 cut(s)	98, 661, 978, 1231, 1342, 1510
Kzo9I	GATC	6 cut(s)	495, 623, 676, 1003, 1077, 1420
LmnI	GCTCC	1 cut(s)	817
LpnPI	CCDG	8 cut(s)	99, 357, 459, 597, 699, 828, 849, 1110
Lsp1109I	GCAGC	4 cut(s)	27, 66, 595, 617
LweI	GCATC	2 cut(s)	1392, 1548
MaeI	CTAG	5 cut(s)	272, 705, 1169, 1292, 1536
MaeII	ACGT	3 cut(s)	219, 308, 1434
MalI	GATC	6 cut(s)	497, 625, 678, 1005, 1079, 1422
MboI	GATC	6 cut(s)	495, 623, 676, 1003, 1077, 1420
MfeI	CAATTG	1 cut(s)	1371
MflI	RGATCY	1 cut(s)	1003
MhlI	GDGCHC	1 cut(s)	68
MlyI	GAGTC	2 cut(s)	1201, 1508
MmeI	TCCRAC	3 cut(s)	98, 170, 1476
Mph1103I	ATGCAT	1 cut(s)	1407
MroXI	GAANNNNTTC	1 cut(s)	1139
MseI	TTAA	7 cut(s)	195, 729, 824, 933, 1161, 1212, 1221
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	4 cut(s)	608, 1052, 1349, 1473
MspI	CCGG	1 cut(s)	1097
MunI	CAATTG	1 cut(s)	1371
Mva1269I	GAATGC	1 cut(s)	724
MwoI	GCNNNNNNNGC	4 cut(s)	15, 63, 1058, 1165
NcoI	CCATGG	1 cut(s)	974
NdeII	GATC	6 cut(s)	495, 623, 676, 1003, 1077, 1420
NheI	GCTAGC	3 cut(s)	1168, 1291, 1535
NlaIII	CATG	6 cut(s)	98, 661, 978, 1231, 1342, 1510
NlaIV	GGNNCC	1 cut(s)	1032
NsiI	ATGCAT	1 cut(s)	1407
PctI	GAATGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	1139
PfeI	GAWTC	4 cut(s)	182, 451, 667, 1044
PkrI	GCNGC	7 cut(s)	17, 56, 607, 610, 1054, 1259, 1348
PleI	GAGTC	2 cut(s)	1200, 1507
PpsI	GAGTC	2 cut(s)	1200, 1507
Ppu21I	YACGTR	1 cut(s)	1435
PpuMI	RGGWCCY	1 cut(s)	1030
PsiI	TTATAA	1 cut(s)	944
Psp124BI	GAGCTC	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	1030
PspN4I	GGNNCC	1 cut(s)	1032
PspPI	GGNCC	1 cut(s)	1030
PspPPI	RGGWCCY	1 cut(s)	1030
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	1003
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	60, 709
RsaNI	GTAC	2 cut(s)	59, 708
RseI	CAYNNNNRTG	1 cut(s)	662
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	7 cut(s)	195, 729, 824, 933, 1161, 1212, 1221
SatI	GCNGC	7 cut(s)	16, 55, 606, 609, 1053, 1258, 1347
Sau3AI	GATC	6 cut(s)	495, 623, 676, 1003, 1077, 1420
Sau96I	GGNCC	1 cut(s)	1030
ScaI	AGTACT	1 cut(s)	709
SchI	GAGTC	2 cut(s)	1201, 1508
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	2 cut(s)	1392, 1548
SinI	GGWCC	1 cut(s)	1030
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	4 cut(s)	113, 401, 582, 680
SmoI	CTYRAG	4 cut(s)	113, 401, 582, 680
SsiI	CCGC	5 cut(s)	1052, 1257, 1347, 1473, 1556
SspMI	CTAG	5 cut(s)	272, 705, 1169, 1292, 1536
SstI	GAGCTC	1 cut(s)	68
StyI	CCWWGG	2 cut(s)	974, 1073
TaiI	ACGT	3 cut(s)	222, 311, 1437
TaqI	TCGA	9 cut(s)	207, 328, 524, 567, 849, 1383, 1423, 1458, 1563
TatI	WGTACW	1 cut(s)	707
TauI	GCSGC	3 cut(s)	1055, 1260, 1349
TfiI	GAWTC	4 cut(s)	182, 451, 667, 1044
Tru1I	TTAA	7 cut(s)	195, 729, 824, 933, 1161, 1212, 1221
Tru9I	TTAA	7 cut(s)	195, 729, 824, 933, 1161, 1212, 1221
TscAI	CASTG	2 cut(s)	1321, 1635
TseI	GCWGC	4 cut(s)	15, 54, 605, 608
TspRI	CASTG	2 cut(s)	1321, 1635
VpaK11BI	GGWCC	1 cut(s)	1030
XapI	RAATTY	6 cut(s)	141, 364, 691, 1385, 1598, 1647
XmnI	GAANNNNTTC	1 cut(s)	1139
XspI	CTAG	5 cut(s)	272, 705, 1169, 1292, 1536
ZrmI	AGTACT	1 cut(s)	709
Zsp2I	ATGCAT	1 cut(s)	1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.