Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8095158.1

Orthogroup ID

OG0002696

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 444

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8095158.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 350 bp

ttttctttccactcatctcagggaaggtataccgagatatagtaggcagtgcttactatgttgctcctgaagtgttacggcgtagttatggaaaggagatagatatttggagtgctggagtaattctgtatattctacttagtggagtacctccattttgggctgagactgagagggggatctttaatgcaatattggaaggtgtagttgactttgaaagtcaaccatggccgtcaatatcagacggtgccaaagacctagttagaaagatgctgacacaggacccaaaaaagagaattacttcactgaaagttcttggtaagatatctcctaaagttacaactaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009751 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

9.4

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61950 AT4G04710 AT4G04710 AT4G04710 AT4G04710 AT4G04720 AT4G04720 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G21940 AT4G21940 AT4G21940
fragaria_vesca	FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130
malus_domestica	MD05G1345600.v1.1 MD10G1321000.v1.1
prunus_persica	Prupe.4G021300_v2.0.a1
pyrus_communis	pycom11g19140
rosa_chinensis	RchiOBHm_Chr5g0003201
rosa_laevigata	RLG00000031086
rosa_multiflora	Rmu_co8095158.1_g000001 Rmu_co8435131.1_g000001 Rmu_sc0000146.1_g000036
rosa_roxburghii	Rroxscaffold_1G00072810
rosa_rugosa	Rorug04G0401400
rosa_samantha	Rh5AG026300 Rh5BG027500 Rh5CG029100 Rh5DG025900
rosa_wichuraiana	Rw0G023540 Rw5G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	247
BceAI	ACGGC	2 cut(s)	94, 216
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	2 cut(s)	249, 284
BmsI	GCATC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	32, 155, 161
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	179
Bsp19I	CCATGG	1 cut(s)	226
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	3 cut(s)	31, 156, 162
BspLI	GGNNCC	2 cut(s)	249, 284
BspPI	GGATC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	179
BssNAI	GTATAC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	226
Bst1107I	GTATAC	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	247
BstDEI	CTNAG	5 cut(s)	18, 139, 164, 170, 344
BstDSI	CCRYGG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	182
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BstZ17I	GTATAC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 304
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	2 cut(s)	163, 231
CviKI_1	RGCY	2 cut(s)	163, 231
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	5 cut(s)	18, 139, 164, 170, 344
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	230
FaiI	YATR	6 cut(s)	30, 40, 59, 89, 131, 228
FatI	CATG	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	230
HincII	GTYRAC	2 cut(s)	210, 223
HindII	GTYRAC	2 cut(s)	210, 223
Hpy166II	GTNNAC	3 cut(s)	30, 210, 223
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	3 cut(s)	30, 210, 223
HpyAV	CCTTC	2 cut(s)	18, 193
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	190
HpyF3I	CTNAG	5 cut(s)	18, 139, 164, 170, 344
Hsp92II	CATG	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	179
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	4 cut(s)	5, 80, 101, 265
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	259
MaeIII	GTNAC	2 cut(s)	74, 336
MalI	GATC	1 cut(s)	181
MboI	GATC	1 cut(s)	179
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	2 cut(s)	122, 296
MnlI	CCTC	2 cut(s)	161, 167
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	249, 284
PdmI	GAANNNNTTC	1 cut(s)	300
PpuMI	RGGWCCY	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	249, 284
PspPI	GGNCC	1 cut(s)	282
PspPPI	RGGWCCY	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	185
Sau3AI	GATC	1 cut(s)	179
Sau96I	GGNCC	1 cut(s)	282
SetI	ASST	4 cut(s)	29, 153, 204, 260
SfaNI	GCATC	1 cut(s)	260
SgeI	CNNG	8 cut(s)	32, 46, 79, 128, 239, 271, 292, 328
SinI	GGWCC	1 cut(s)	282
Sse9I	AATT	2 cut(s)	122, 296
SspI	AATATT	1 cut(s)	194
SspMI	CTAG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	247
TasI	AATT	2 cut(s)	122, 296
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	2 cut(s)	54, 311
TspRI	CASTG	2 cut(s)	54, 311
VpaK11BI	GGWCC	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.