Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002696

Physical Location & Seq

Genomic Coordinates Forward (+)

93810979 .. 93814843

Gene Structure 3865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTGTGATGCACCGTGATCTCAAGCCCGAGAATTTCTTGCTATCTAGTAAGGGGGAAGGGGCAATGCTCAAGGGTACGGATTTCGGGTTGTCTGTTTTTATTGAGGAAGGGAAGGTATACCGAGATATAGTAGGCAGTGCTTACTATGTTGCTCCTGAAGTGTTACGGCGTAGTTATGGAAAGGAGATAGACATTTGGAGTGCTGGAGTAATTCTGTATATTCTACTTAGTGGAGTACCTCCATTTTGGGCTGAGACTGAGAGGGGCATCTTTAATGCAATCTTGGAAGGTGTAGTTGACTTTGAAAGTCAACCATGGCCGTCAATATCAGACGGTGCCAAAGACCTAGTTAGAAAGATGCTGACACAGGACCCAAAAAAGAGAATTACTTCATTGAAAGTTCTTGAGCATCCCTGGCTCAGAGTAGGTGGAGAAGCATCAGACAAGCCAATAGATAGTGCAGTTCTCTCTAGAATGAAGCAGTTGAGAGCAATGAACAAGCTTAAGAAGCTTGCCTTGAAGGTAATAGCGGAAAATCTATCTGAAGAAGAAATTAAAGGTCTTAAGGCAATGTTCACCAGTATGGACACTGACAAAAGTGGTACAATAACCTACGAAGAACTGAAGACAGGATTAGCTCGTATTGGGTCACGGCTATCAGAAACCGAAGTCAGGCAACTTATGGATGCTGCTGATGTTGATGGAAATGGATCGATTGACTATATTGAATTTATATCTGCTACTATGCATAGACAAAGACTAGAGAGAGATGAACACCTGTACAAAGCATTTCAGTATTTTGACAAGGATAGCAGTGGGTATATAACAAGAGATGAATTAGAGGCTGCTATGAAGGAGCATGGAATGGGTGATGAAAACACTATCAAAGAAATAATTTCCGAGGTTGATGCAGATAATGACGGGAGGATCAACTACACGGAATTCTGCACAATGATGAGAAGTGGAAATCAACCCACAAGGCACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009751 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

330

Amino Acids

37.21

Weight (kDa)

5.3

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 141	2.5e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 134	5.5e-09	Protein tyrosine and serine/threonine kinase
EF-hand_7	PF13499	188 - 249	1.9e-12	EF-hand domain pair
EF-hand_1	PF00036	189 - 215	1.5e-06	EF hand domain
EF-hand_8	PF13833	201 - 249	1.4e-06	EF-hand domain pair
EF-hand_7	PF13499	259 - 321	8.4e-17	EF-hand domain pair
EF-hand_1	PF00036	261 - 287	5.9e-07	EF hand domain
EF-hand_6	PF13405	261 - 289	1.7e-07	EF-hand domain
EF-hand_8	PF13833	272 - 321	8.3e-09	EF-hand domain pair
EF-hand_1	PF00036	296 - 322	3.1e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61950 AT4G04710 AT4G04710 AT4G04710 AT4G04710 AT4G04720 AT4G04720 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G21940 AT4G21940 AT4G21940
fragaria_vesca	FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130
malus_domestica	MD05G1345600.v1.1 MD10G1321000.v1.1
prunus_persica	Prupe.4G021300_v2.0.a1
pyrus_communis	pycom11g19140
rosa_chinensis	RchiOBHm_Chr5g0003201
rosa_laevigata	RLG00000031086
rosa_multiflora	Rmu_co8095158.1_g000001 Rmu_co8435131.1_g000001 Rmu_sc0000146.1_g000036
rosa_roxburghii	Rroxscaffold_1G00072810
rosa_rugosa	Rorug04G0401400
rosa_samantha	Rh5AG026300 Rh5BG027500 Rh5CG029100 Rh5DG025900
rosa_wichuraiana	Rw0G023540 Rw5G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	2 cut(s)	721, 938
AcoI	YGGCCR	1 cut(s)	320
AcsI	RAATTY	3 cut(s)	34, 731, 944
AcuI	CTGAAG	3 cut(s)	180, 567, 647
AfaI	GTAC	4 cut(s)	79, 240, 607, 785
AfiI	CCNNNNNNNGG	1 cut(s)	675
AflII	CTTAAG	2 cut(s)	506, 566
AgsI	TTSAA	4 cut(s)	308, 400, 523, 731
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	3 cut(s)	505, 514, 641
AluI	AGCT	3 cut(s)	505, 514, 641
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	2 cut(s)	721, 938
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	2 cut(s)	692, 848
ApoI	RAATTY	3 cut(s)	34, 731, 944
Asp700I	GAANNNNTTC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	571, 884
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	2 cut(s)	679, 835
BccI	CCATC	1 cut(s)	698
BceAI	ACGGC	3 cut(s)	185, 307, 671
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciT130I	CCWGG	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	4 cut(s)	48, 350, 474, 764
BfrI	CTTAAG	2 cut(s)	506, 566
BisI	GCNGC	2 cut(s)	693, 849
BlsI	GCNGC	2 cut(s)	694, 850
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	340, 375
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	6 cut(s)	279, 351, 421, 449, 679, 901
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	3 cut(s)	8, 56, 428
Bsa29I	ATCGAT	1 cut(s)	716
BsaJI	CCNNGG	3 cut(s)	317, 416, 903
Bsc4I	CCNNNNNNNGG	1 cut(s)	675
Bse1I	ACTGG	1 cut(s)	582
Bse3DI	GCAATG	3 cut(s)	72, 501, 579
BseBI	CCWGG	1 cut(s)	418
BseCI	ATCGAT	1 cut(s)	716
BseDI	CCNNGG	3 cut(s)	317, 416, 903
BseGI	GGATG	2 cut(s)	412, 694
BseLI	CCNNNNNNNGG	1 cut(s)	675
BseMI	GCAATG	3 cut(s)	72, 501, 579
BseMII	CTCAG	3 cut(s)	246, 252, 436
BseNI	ACTGG	1 cut(s)	582
BseXI	GCAGC	2 cut(s)	679, 835
BsgI	GTGCAG	2 cut(s)	483, 934
BshFI	GGCC	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	338
BshVI	ATCGAT	1 cut(s)	716
BsiHKCI	CYCGRG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	675
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	3 cut(s)	19, 713, 930
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	3 cut(s)	247, 253, 435
BspDI	ATCGAT	1 cut(s)	716
BspLI	GGNNCC	2 cut(s)	340, 375
BspPI	GGATC	2 cut(s)	721, 938
BspT107I	GGYRCC	1 cut(s)	338
BspTI	CTTAAG	2 cut(s)	506, 566
BsrDI	GCAATG	3 cut(s)	72, 501, 579
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	582
BssECI	CCNNGG	3 cut(s)	317, 416, 903
BssMI	GATC	3 cut(s)	19, 713, 930
BssNAI	GTATAC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	317
Bst1107I	GTATAC	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	17, 338
BstAFI	CTTAAG	2 cut(s)	506, 566
BstAUI	TGTACA	1 cut(s)	783
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	4 cut(s)	230, 255, 261, 422
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	412, 694
BstKTI	GATC	3 cut(s)	22, 716, 933
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	19, 713, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 511
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	679, 835
BstV2I	GAAGAC	1 cut(s)	635
BstZ17I	GTATAC	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	716
BsuRI	GGCC	1 cut(s)	322
BsuTUI	ATCGAT	1 cut(s)	716
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	412, 694
BtsI	GCAGTG	2 cut(s)	145, 823
BtsIMutI	CAGTG	3 cut(s)	145, 591, 823
Cac8I	GCNNGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	373
ClaI	ATCGAT	1 cut(s)	716
Csp6I	GTAC	4 cut(s)	78, 239, 606, 784
CviAII	CATG	2 cut(s)	318, 863
CviQI	GTAC	4 cut(s)	78, 239, 606, 784
DdeI	CTNAG	4 cut(s)	230, 255, 261, 422
DpnI	GATC	3 cut(s)	21, 715, 932
DpnII	GATC	3 cut(s)	19, 713, 930
EaeI	YGGCCR	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	3 cut(s)	180, 567, 647
Eco88I	CYCGRG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	944
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	321, 866
FalI	AAGNNNNNCTT	3 cut(s)	503, 535, 973
FatI	CATG	2 cut(s)	317, 862
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	693, 849
FokI	GGATG	2 cut(s)	399, 701
Fsp4HI	GCNGC	2 cut(s)	693, 849
FspBI	CTAG	4 cut(s)	48, 350, 474, 764
GluI	GCNGC	2 cut(s)	693, 849
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	322
Hin1II	CATG	2 cut(s)	321, 866
HincII	GTYRAC	2 cut(s)	301, 314
HindII	GTYRAC	2 cut(s)	301, 314
HindIII	AAGCTT	2 cut(s)	503, 512
HphI	GGTGA	2 cut(s)	571, 884
Hpy166II	GTNNAC	4 cut(s)	121, 301, 314, 579
Hpy188I	TCNGA	6 cut(s)	334, 425, 445, 547, 664, 904
Hpy188III	TCNNGA	4 cut(s)	158, 407, 474, 990
Hpy8I	GTNNAC	4 cut(s)	121, 301, 314, 579
HpyAV	CCTTC	6 cut(s)	53, 104, 109, 284, 517, 850
HpyCH4III	ACNGT	2 cut(s)	17, 338
HpyCH4V	TGCA	6 cut(s)	13, 281, 464, 751, 914, 951
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 511
HpyF3I	CTNAG	4 cut(s)	230, 255, 261, 422
Hsp92II	CATG	2 cut(s)	321, 866
Kzo9I	GATC	3 cut(s)	19, 713, 930
LmnI	GCTCC	2 cut(s)	160, 859
LpnPI	CCDG	9 cut(s)	171, 192, 356, 403, 430, 595, 618, 661, 794
Lsp1109I	GCAGC	2 cut(s)	679, 835
LweI	GCATC	6 cut(s)	279, 351, 421, 449, 679, 901
MaeI	CTAG	4 cut(s)	48, 350, 474, 764
MaeIII	GTNAC	2 cut(s)	165, 651
MalI	GATC	3 cut(s)	21, 715, 932
MboI	GATC	3 cut(s)	19, 713, 930
MboII	GAAGA	4 cut(s)	560, 563, 632, 640
MluCI	AATT	8 cut(s)	34, 213, 387, 555, 731, 839, 897, 944
MnlI	CCTC	6 cut(s)	100, 252, 258, 838, 898, 921
Mph1103I	ATGCAT	1 cut(s)	753
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	4 cut(s)	276, 507, 558, 567
MslI	CAYNNNNRTG	2 cut(s)	584, 956
MspCI	CTTAAG	2 cut(s)	506, 566
MspR9I	CCNGG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	2 cut(s)	418, 511
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	3 cut(s)	19, 713, 930
NlaIII	CATG	2 cut(s)	321, 866
NlaIV	GGNNCC	2 cut(s)	340, 375
NmuCI	GTSAC	1 cut(s)	651
NsiI	ATGCAT	1 cut(s)	753
PdmI	GAANNNNTTC	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	694, 850
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	340, 375
PspPI	GGNCC	1 cut(s)	373
PspPPI	RGGWCCY	1 cut(s)	373
RsaI	GTAC	4 cut(s)	79, 240, 607, 785
RsaNI	GTAC	4 cut(s)	78, 239, 606, 784
RseI	CAYNNNNRTG	2 cut(s)	584, 956
SaqAI	TTAA	4 cut(s)	276, 507, 558, 567
SatI	GCNGC	2 cut(s)	693, 849
Sau3AI	GATC	3 cut(s)	19, 713, 930
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	418
SfaNI	GCATC	6 cut(s)	279, 351, 421, 449, 679, 901
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	2 cut(s)	584, 956
SmlI	CTYRAG	5 cut(s)	23, 71, 407, 506, 566
SmoI	CTYRAG	5 cut(s)	23, 71, 407, 506, 566
Sse9I	AATT	8 cut(s)	34, 213, 387, 555, 731, 839, 897, 944
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	4 cut(s)	48, 350, 474, 764
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	17, 338
TaqI	TCGA	1 cut(s)	716
TasI	AATT	8 cut(s)	34, 213, 387, 555, 731, 839, 897, 944
TatI	WGTACW	1 cut(s)	783
Tru1I	TTAA	4 cut(s)	276, 507, 558, 567
Tru9I	TTAA	4 cut(s)	276, 507, 558, 567
TscAI	CASTG	3 cut(s)	145, 598, 823
TseFI	GTSAC	1 cut(s)	651
TseI	GCWGC	2 cut(s)	692, 848
Tsp45I	GTSAC	1 cut(s)	651
TspDTI	ATGAA	7 cut(s)	384, 494, 512, 789, 852, 869, 891
TspGWI	ACGGA	2 cut(s)	95, 956
TspRI	CASTG	3 cut(s)	145, 598, 823
Vha464I	CTTAAG	2 cut(s)	506, 566
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	3 cut(s)	34, 731, 944
XbaI	TCTAGA	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	4 cut(s)	48, 350, 474, 764
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.