Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002696

Physical Location & Seq

Genomic Coordinates Reverse (-)

1820466 .. 1824676

Gene Structure 4211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG026300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGTTGCTGTGGCAGCAAGACCAAACCCAATAATGGGTATGTCTCCTCATCCATACCCATCTCTCACCACCACCCACAACAGCAATCCTTGTCTGTCTCAACCCAGCAACCTCACAAAGTTTCAGCTCCTCCAACCCATAACCCACCTCCACCACCCCAACCCCAATACCAACCACCAAAGCCACACCCACAGCCAGTGAAGCCAGCAGTGCCGCCAAACAGCATTCTTGAGAAGCCCTTTGATGACATTAAGCAGTACTACACTCTGGGCAAAGAACTGGGCAGAGGCCAATTTGGGATCACGTACTTGTGCACAGAGAAGTCTACGGGTGATACATATGCCTGCAAGTCGATCTTGAAGCGCAAGCTGGTGAGTAAAAGTGATAGGAATGATATCAAGAGAGAGATACAGATCATGCAGCACATGTCTGGGCAGCCCAACGTTGTGGAGATCAAGGGGGCTTATGAGGACAGGTACTCTGTGCATTTGGTGATGGAGCTCTGCGCCGGCGGGGAGCTTTTCGATAGGATCATAGCGCAGGGAGTGTATTCGGAGAGAGCTGCCGCCGCGATTGTGAGGGACATTGTGAATGTTGTGCACAGTTGTCATGTTATGGCTGTGATGCACCGTGATCTCAAGCCCGAGAATTTCTTGCTGTCTAGTAAGGGGGAAGGGGCAGTGCTCAAGGGTACGGATTTCGGGTTGTCTGTTTTTATTGAGGAAGGGAAGGTATACCGAGATATAGTAGGCAGTGCTTACTATGTTGCTCCTGAAGTGTTACGGCGTAGTTATGGAAAGGAGATAGATATTTGGAGTGCTGGAGTAATTCTGTATATTCTACTTAGTGGAGTACCTCCATTTTGGGCTGAGACTGAGAGGGGCATCTTTAATGCAATATTGGAAGGTGTAGTTGACTTTGAAAGTCAACCATGGCCGTCAATATCAGACGGTGCCAAAGACCTAGTTAGAAAGATGCTGACACAGGACCCAAAAAAGAGAATTACTTCACTGAAAGTTCTTGGTAAGATATCTCCTAAAGTTACAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009751 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

351

Amino Acids

38.89

Weight (kDa)

9.02

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	88 - 341	8.3e-72	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	89 - 338	3.7e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61950 AT4G04710 AT4G04710 AT4G04710 AT4G04710 AT4G04720 AT4G04720 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G21940 AT4G21940 AT4G21940
fragaria_vesca	FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130
malus_domestica	MD05G1345600.v1.1 MD10G1321000.v1.1
prunus_persica	Prupe.4G021300_v2.0.a1
pyrus_communis	pycom11g19140
rosa_chinensis	RchiOBHm_Chr5g0003201
rosa_laevigata	RLG00000031086
rosa_multiflora	Rmu_co8095158.1_g000001 Rmu_co8435131.1_g000001 Rmu_sc0000146.1_g000036
rosa_roxburghii	Rroxscaffold_1G00072810
rosa_rugosa	Rorug04G0401400
rosa_samantha	Rh5AG026300 Rh5BG027500 Rh5CG029100 Rh5DG025900
rosa_wichuraiana	Rw0G023540 Rw5G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	953
AccI	GTMKAC	2 cut(s)	326, 735
AccII	CGCG	1 cut(s)	572
AciI	CCGC	4 cut(s)	215, 513, 567, 570
AclI	AACGTT	1 cut(s)	444
AclWI	GGATC	2 cut(s)	308, 539
AcoI	YGGCCR	1 cut(s)	935
AcsI	RAATTY	1 cut(s)	649
AcuI	CTGAAG	1 cut(s)	795
AfaI	GTAC	5 cut(s)	260, 308, 479, 694, 855
AfiI	CCNNNNNNNGG	2 cut(s)	35, 36
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	361, 923
AluBI	AGCT	5 cut(s)	128, 370, 502, 520, 563
AluI	AGCT	5 cut(s)	128, 370, 502, 520, 563
Alw21I	GWGCWC	4 cut(s)	317, 504, 603, 687
Alw26I	GTCTC	3 cut(s)	49, 103, 866
Alw44I	GTGCAC	2 cut(s)	313, 599
AlwI	GGATC	2 cut(s)	308, 539
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	289, 935
ApaLI	GTGCAC	2 cut(s)	313, 599
ApeKI	GCWGC	4 cut(s)	15, 421, 436, 563
ApoI	RAATTY	1 cut(s)	649
Asp700I	GAANNNNTTC	1 cut(s)	1006
AspLEI	GCGC	3 cut(s)	366, 509, 541
AspS9I	GGNCC	1 cut(s)	988
AsuHPI	GGTGA	4 cut(s)	59, 344, 385, 505
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	988
BaeGI	GKGCMC	2 cut(s)	317, 603
BanI	GGYRCC	1 cut(s)	953
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	4 cut(s)	317, 504, 603, 687
BbvI	GCAGC	4 cut(s)	27, 433, 448, 550
BccI	CCATC	2 cut(s)	68, 490
BceAI	ACGGC	2 cut(s)	800, 922
BcoDI	GTCTC	3 cut(s)	49, 103, 866
BfaI	CTAG	2 cut(s)	663, 965
BisI	GCNGC	7 cut(s)	16, 215, 422, 437, 564, 567, 570
BlsI	GCNGC	7 cut(s)	17, 216, 423, 438, 565, 568, 571
BmcAI	AGTACT	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	988
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	988
BmiI	GGNNCC	2 cut(s)	955, 990
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	3 cut(s)	615, 894, 966
BmuI	ACTGGG	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	843
BpuEI	CTTGAG	3 cut(s)	251, 623, 671
BsaAI	YACGTR	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	932
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 36
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	197, 285
Bse8I	GATNNNNATC	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	932
BseGI	GGATG	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	35, 36
BseMII	CTCAG	2 cut(s)	861, 867
BseNI	ACTGG	2 cut(s)	197, 285
BseRI	GAGGAG	2 cut(s)	37, 120
BseSI	GKGCMC	2 cut(s)	317, 603
BseXI	GCAGC	4 cut(s)	27, 433, 448, 550
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	2 cut(s)	291, 937
BshNI	GGYRCC	1 cut(s)	953
BsiHKAI	GWGCWC	4 cut(s)	317, 504, 603, 687
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	35, 36
BsmAI	GTCTC	3 cut(s)	49, 103, 866
BsmFI	GGGAC	1 cut(s)	596
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	291, 937
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	4 cut(s)	317, 504, 603, 687
Bsp143I	GATC	6 cut(s)	300, 354, 414, 453, 531, 634
Bsp19I	CCATGG	1 cut(s)	932
BspACI	CCGC	4 cut(s)	215, 513, 567, 570
BspANI	GGCC	2 cut(s)	291, 937
BspCNI	CTCAG	2 cut(s)	862, 868
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	2 cut(s)	955, 990
BspPI	GGATC	2 cut(s)	308, 539
BspT107I	GGYRCC	1 cut(s)	953
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	197, 285
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	932
BssMI	GATC	6 cut(s)	300, 354, 414, 453, 531, 634
BssNAI	GTATAC	1 cut(s)	736
BssT1I	CCWWGG	1 cut(s)	932
Bst1107I	GTATAC	1 cut(s)	736
Bst4CI	ACNGT	3 cut(s)	605, 632, 953
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	4 cut(s)	207, 346, 368, 511
BstDEI	CTNAG	4 cut(s)	845, 870, 876, 1050
BstDSI	CCRYGG	1 cut(s)	932
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	572
BstHHI	GCGC	3 cut(s)	366, 509, 541
BstKTI	GATC	6 cut(s)	303, 357, 417, 456, 534, 637
BstMAI	GTCTC	3 cut(s)	49, 103, 866
BstMBI	GATC	6 cut(s)	300, 354, 414, 453, 531, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 202, 211, 569
BstNSI	RCATGY	1 cut(s)	430
BstSLI	GKGCMC	2 cut(s)	317, 603
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	4 cut(s)	27, 433, 448, 550
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstZ17I	GTATAC	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	291, 937
BtgI	CCRYGG	1 cut(s)	932
BtsCI	GGATG	1 cut(s)	50
BtsI	GCAGTG	3 cut(s)	216, 687, 760
BtsIMutI	CAGTG	5 cut(s)	204, 216, 687, 760, 1010
Cac8I	GCNNGC	4 cut(s)	207, 346, 368, 511
CfoI	GCGC	3 cut(s)	366, 509, 541
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	988
Csp6I	GTAC	5 cut(s)	259, 307, 478, 693, 854
CviAII	CATG	4 cut(s)	418, 427, 611, 933
CviQI	GTAC	5 cut(s)	259, 307, 478, 693, 854
DdeI	CTNAG	4 cut(s)	845, 870, 876, 1050
DpnI	GATC	6 cut(s)	302, 356, 416, 455, 533, 636
DpnII	GATC	6 cut(s)	300, 354, 414, 453, 531, 634
EaeI	YGGCCR	1 cut(s)	935
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	932
Eco24I	GRGCYC	1 cut(s)	504
Eco32I	GATATC	2 cut(s)	397, 1032
Eco47I	GGWCC	1 cut(s)	988
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	988
EcoRV	GATATC	2 cut(s)	397, 1032
EcoT14I	CCWWGG	1 cut(s)	932
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	932
FaeI	CATG	4 cut(s)	421, 430, 614, 936
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	4 cut(s)	417, 426, 610, 932
FauI	CCCGC	1 cut(s)	506
FauNDI	CATATG	1 cut(s)	340
FblI	GTMKAC	2 cut(s)	326, 735
Fnu4HI	GCNGC	7 cut(s)	16, 215, 422, 437, 564, 567, 570
FokI	GGATG	1 cut(s)	37
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	7 cut(s)	16, 215, 422, 437, 564, 567, 570
FspBI	CTAG	2 cut(s)	663, 965
GlaI	GCGC	3 cut(s)	365, 508, 540
GluI	GCNGC	7 cut(s)	16, 215, 422, 437, 564, 567, 570
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	2 cut(s)	291, 937
HapII	CCGG	1 cut(s)	510
HhaI	GCGC	3 cut(s)	366, 509, 541
Hin1II	CATG	4 cut(s)	421, 430, 614, 936
Hin6I	GCGC	3 cut(s)	364, 507, 539
HinP1I	GCGC	3 cut(s)	364, 507, 539
HincII	GTYRAC	2 cut(s)	916, 929
HindII	GTYRAC	2 cut(s)	916, 929
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	4 cut(s)	59, 344, 385, 505
Hpy166II	GTNNAC	6 cut(s)	315, 327, 601, 736, 916, 929
Hpy188I	TCNGA	2 cut(s)	556, 949
Hpy188III	TCNNGA	4 cut(s)	230, 358, 400, 773
Hpy8I	GTNNAC	6 cut(s)	315, 327, 601, 736, 916, 929
HpyAV	CCTTC	4 cut(s)	668, 719, 724, 899
HpyCH4III	ACNGT	3 cut(s)	605, 632, 953
HpyCH4IV	ACGT	2 cut(s)	305, 444
HpyCH4V	TGCA	7 cut(s)	315, 348, 421, 487, 601, 628, 896
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 202, 211, 569
HpyF3I	CTNAG	4 cut(s)	845, 870, 876, 1050
HpySE526I	ACGT	2 cut(s)	305, 444
Hsp92II	CATG	4 cut(s)	421, 430, 614, 936
HspAI	GCGC	3 cut(s)	364, 507, 539
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
Kzo9I	GATC	6 cut(s)	300, 354, 414, 453, 531, 634
LmnI	GCTCC	4 cut(s)	133, 499, 517, 775
Lsp1109I	GCAGC	4 cut(s)	27, 433, 448, 550
LweI	GCATC	3 cut(s)	615, 894, 966
MaeI	CTAG	2 cut(s)	663, 965
MaeII	ACGT	2 cut(s)	305, 444
MaeIII	GTNAC	2 cut(s)	780, 1042
MalI	GATC	6 cut(s)	302, 356, 416, 455, 533, 636
MboI	GATC	6 cut(s)	300, 354, 414, 453, 531, 634
MhlI	GDGCHC	4 cut(s)	317, 504, 603, 687
MluCI	AATT	4 cut(s)	293, 649, 828, 1002
MmeI	TCCRAC	1 cut(s)	158
MreI	CGCCGGCG	1 cut(s)	509
MroNI	GCCGGC	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	1006
MseI	TTAA	2 cut(s)	252, 891
MspI	CCGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	225
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	4 cut(s)	15, 202, 211, 569
NaeI	GCCGGC	1 cut(s)	511
NcoI	CCATGG	1 cut(s)	932
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	6 cut(s)	300, 354, 414, 453, 531, 634
NgoMIV	GCCGGC	1 cut(s)	509
NlaIII	CATG	4 cut(s)	421, 430, 614, 936
NlaIV	GGNNCC	2 cut(s)	955, 990
NspI	RCATGY	1 cut(s)	430
PciI	ACATGT	1 cut(s)	426
PctI	GAATGC	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	1006
PkrI	GCNGC	7 cut(s)	17, 216, 423, 438, 565, 568, 571
Ppu21I	YACGTR	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	988
PscI	ACATGT	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	504
Psp1406I	AACGTT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	988
PspFI	CCCAGC	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	955, 990
PspPI	GGNCC	1 cut(s)	988
PspPPI	RGGWCCY	1 cut(s)	988
RsaI	GTAC	5 cut(s)	260, 308, 479, 694, 855
RsaNI	GTAC	5 cut(s)	259, 307, 478, 693, 854
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	252, 891
SatI	GCNGC	7 cut(s)	16, 215, 422, 437, 564, 567, 570
Sau3AI	GATC	6 cut(s)	300, 354, 414, 453, 531, 634
Sau96I	GGNCC	1 cut(s)	988
ScaI	AGTACT	1 cut(s)	260
SduI	GDGCHC	4 cut(s)	317, 504, 603, 687
SfaNI	GCATC	3 cut(s)	615, 894, 966
SgrAI	CRCCGGYG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	988
SmlI	CTYRAG	3 cut(s)	230, 638, 686
SmoI	CTYRAG	3 cut(s)	230, 638, 686
Sse9I	AATT	4 cut(s)	293, 649, 828, 1002
SsiI	CCGC	4 cut(s)	215, 513, 567, 570
SspI	AATATT	1 cut(s)	900
SspMI	CTAG	2 cut(s)	663, 965
SstI	GAGCTC	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	932
TaaI	ACNGT	3 cut(s)	605, 632, 953
TaiI	ACGT	2 cut(s)	308, 447
TaqI	TCGA	2 cut(s)	353, 525
TasI	AATT	4 cut(s)	293, 649, 828, 1002
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	3 cut(s)	217, 569, 572
Tru1I	TTAA	2 cut(s)	252, 891
Tru9I	TTAA	2 cut(s)	252, 891
TscAI	CASTG	5 cut(s)	204, 216, 687, 760, 1017
TseI	GCWGC	4 cut(s)	15, 421, 436, 563
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	5 cut(s)	204, 216, 687, 760, 1017
VneI	GTGCAC	2 cut(s)	313, 599
VpaK11BI	GGWCC	1 cut(s)	988
XapI	RAATTY	1 cut(s)	649
XceI	RCATGY	1 cut(s)	430
XmiI	GTMKAC	2 cut(s)	326, 735
XmnI	GAANNNNTTC	1 cut(s)	1006
XspI	CTAG	2 cut(s)	663, 965
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.