Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8435131.1

Orthogroup ID

OG0002696

Physical Location & Seq

Genomic Coordinates Reverse (-)

62 .. 1306

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8435131.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgttctgtatggtagagcatccctggctcagagtaggtggagaagcatcagacaagccaatagatagtgcagttctctctagaatgaagcagttgagagcaatgaataagcttaagaagcttgccttgaaggtaatagcggaaaatctatctgaagaagaaattaaaggtcttaaggcaatgttcaccagtatggacaccgacaaaagtggtacaataacctacgaagaactgaagacaggattagctcgtattgggtcacggctatcagaaaccgaagtcaggcaactaatggatgctgctgacgttgatggaaatggatcgattgactatattgaatttatatctgctactatgcatagacaaagactagagagagatgaacacctgtacaaagcatttcagtattttgacaaggatagcagtgggtatataacaagagatgaattagaggctgctatgaaggagcatggaatgggtgatgaaaacactatcaaagaaataatttccgaggttgatgcagataatgacgggaggatcaactacacggaattctgcacaatgatgagaagtggaaatcaacccacaaggcactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009751 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

199

Amino Acids

22.63

Weight (kDa)

5.14

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61950 AT4G04710 AT4G04710 AT4G04710 AT4G04710 AT4G04720 AT4G04720 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G21940 AT4G21940 AT4G21940
fragaria_vesca	FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130
malus_domestica	MD05G1345600.v1.1 MD10G1321000.v1.1
prunus_persica	Prupe.4G021300_v2.0.a1
pyrus_communis	pycom11g19140
rosa_chinensis	RchiOBHm_Chr5g0003201
rosa_laevigata	RLG00000031086
rosa_multiflora	Rmu_co8095158.1_g000001 Rmu_co8435131.1_g000001 Rmu_sc0000146.1_g000036
rosa_roxburghii	Rroxscaffold_1G00072810
rosa_rugosa	Rorug04G0401400
rosa_samantha	Rh5AG026300 Rh5BG027500 Rh5CG029100 Rh5DG025900
rosa_wichuraiana	Rw0G023540 Rw5G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	328, 545
AcsI	RAATTY	2 cut(s)	338, 551
AcuI	CTGAAG	2 cut(s)	174, 254
AfaI	GTAC	2 cut(s)	214, 392
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflII	CTTAAG	2 cut(s)	113, 173
AgsI	TTSAA	2 cut(s)	130, 338
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	112, 121, 248
AluI	AGCT	3 cut(s)	112, 121, 248
AlwI	GGATC	2 cut(s)	328, 545
ApeKI	GCWGC	2 cut(s)	299, 455
ApoI	RAATTY	2 cut(s)	338, 551
AsuHPI	GGTGA	2 cut(s)	178, 491
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	286, 442
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	1 cut(s)	25
BfaI	CTAG	2 cut(s)	81, 371
BfrI	CTTAAG	2 cut(s)	113, 173
BisI	GCNGC	2 cut(s)	300, 456
BlsI	GCNGC	2 cut(s)	301, 457
Bme1390I	CCNGG	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	4 cut(s)	28, 56, 286, 508
BpiI	GAAGAC	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	23, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	2 cut(s)	108, 186
BseBI	CCWGG	1 cut(s)	25
BseCI	ATCGAT	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	23, 510
BseGI	GGATG	2 cut(s)	19, 301
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	2 cut(s)	108, 186
BseMII	CTCAG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	286, 442
BsgI	GTGCAG	2 cut(s)	90, 541
BshVI	ATCGAT	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	282
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	320, 537
BspACI	CCGC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	323
BspPI	GGATC	2 cut(s)	328, 545
BspTI	CTTAAG	2 cut(s)	113, 173
BsrDI	GCAATG	2 cut(s)	108, 186
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	23, 510
BssMI	GATC	2 cut(s)	320, 537
Bst2UI	CCWGG	1 cut(s)	25
BstAFI	CTTAAG	2 cut(s)	113, 173
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	19, 301
BstKTI	GATC	2 cut(s)	323, 540
BstMBI	GATC	2 cut(s)	320, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 118
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	286, 442
BstV2I	GAAGAC	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	323
BsuTUI	ATCGAT	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	19, 301
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	123
ClaI	ATCGAT	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	213, 391
CviAII	CATG	1 cut(s)	470
CviJI	RGCY	7 cut(s)	28, 58, 112, 121, 248, 265, 455
CviKI_1	RGCY	7 cut(s)	28, 58, 112, 121, 248, 265, 455
CviQI	GTAC	2 cut(s)	213, 391
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	2 cut(s)	322, 539
DpnII	GATC	2 cut(s)	320, 537
Eco57I	CTGAAG	2 cut(s)	174, 254
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	360
FaeI	CATG	1 cut(s)	473
FalI	AAGNNNNNCTT	3 cut(s)	110, 142, 580
FatI	CATG	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	300, 456
FokI	GGATG	2 cut(s)	6, 308
Fsp4HI	GCNGC	2 cut(s)	300, 456
FspBI	CTAG	2 cut(s)	81, 371
GluI	GCNGC	2 cut(s)	300, 456
Hin1II	CATG	1 cut(s)	473
HindIII	AAGCTT	2 cut(s)	110, 119
HphI	GGTGA	2 cut(s)	178, 491
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	5 cut(s)	32, 52, 154, 271, 511
Hpy188III	TCNNGA	2 cut(s)	81, 597
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	2 cut(s)	124, 457
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	71, 358, 521, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 118
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	320, 537
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	6 cut(s)	10, 37, 202, 225, 268, 401
Lsp1109I	GCAGC	2 cut(s)	286, 442
LweI	GCATC	4 cut(s)	28, 56, 286, 508
MaeI	CTAG	2 cut(s)	81, 371
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	2 cut(s)	322, 539
MboI	GATC	2 cut(s)	320, 537
MboII	GAAGA	4 cut(s)	167, 170, 239, 247
MluCI	AATT	5 cut(s)	162, 338, 446, 504, 551
MnlI	CCTC	3 cut(s)	445, 505, 528
Mph1103I	ATGCAT	1 cut(s)	360
MseI	TTAA	3 cut(s)	114, 165, 174
MslI	CAYNNNNRTG	2 cut(s)	191, 563
MspCI	CTTAAG	2 cut(s)	113, 173
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	25, 118
NdeII	GATC	2 cut(s)	320, 537
NlaIII	CATG	1 cut(s)	473
NmuCI	GTSAC	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	301, 457
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	214, 392
RsaNI	GTAC	2 cut(s)	213, 391
RseI	CAYNNNNRTG	2 cut(s)	191, 563
SaqAI	TTAA	3 cut(s)	114, 165, 174
SatI	GCNGC	2 cut(s)	300, 456
Sau3AI	GATC	2 cut(s)	320, 537
ScrFI	CCNGG	1 cut(s)	25
SfaNI	GCATC	4 cut(s)	28, 56, 286, 508
SmiMI	CAYNNNNRTG	2 cut(s)	191, 563
SmlI	CTYRAG	2 cut(s)	113, 173
SmoI	CTYRAG	2 cut(s)	113, 173
Sse9I	AATT	5 cut(s)	162, 338, 446, 504, 551
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	2 cut(s)	81, 371
StyD4I	CCNGG	1 cut(s)	23
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	323
TasI	AATT	5 cut(s)	162, 338, 446, 504, 551
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	3 cut(s)	114, 165, 174
Tru9I	TTAA	3 cut(s)	114, 165, 174
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	2 cut(s)	299, 455
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	6 cut(s)	101, 119, 396, 459, 476, 498
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	430
Vha464I	CTTAAG	2 cut(s)	113, 173
XapI	RAATTY	2 cut(s)	338, 551
XbaI	TCTAGA	1 cut(s)	80
XspI	CTAG	2 cut(s)	81, 371
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.