Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002696

Physical Location & Seq

Genomic Coordinates Reverse (-)

1796139 .. 1800455

Gene Structure 4317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG025900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGTTGCTGTAGCAGCAAGACCAAACCCAATCCAGGTCCTAATAATGGGTATGTCTCCTCATCCATACCCATCTCTCATCACCACCCACAACAGCAACCCTTGTCTGTCTCAACCCAGCAACCTCACAAAGTTTCAGCTCCTCCAACCCATAACCCACCTCCACCACCCCAACCCCAATACCAACCACCACCTCCAAAGCCACAGCCAGCAAAGCCAGCAGCGCCGCCAAACAGCATTCTTGAGAAGCCCTTTGATGACATTAAGCAGTACTACACTCTGGGGAAAGAACTGGGCAGAGGCCAATTTGGGATCACGTACTTGTGCACAGAGAAGTCTACGGGTGACACTTATGCCTGTAAGTCGATCTTGAAGCGCAAACTGGTGAGTAAAAGTGACAGGGATGATATCAAGAGGGAGATACAGATCATGCAGCACATGTCTGGGCAGCGCAACATTGTGGACATCAGGGGGGCTTATGAGGACAGGTACTCTGTGCATTTGGTGATGGAGCTCTGTGCCGGAGGGGAGCTTTTCGATAGGATCATAGCGCAGGGAGTGTATTCGGAGAGAGCTGCCGCCGCGATTGTGAGGGACATTGTGAATGTTGTGCACAGTTGTCATGTTATGGCTGTGATGCACCGTGATCTCAAGCCCGAGAATTTCTTGCTGTCTAGTAAGGGGGAAGGGGCAATGCTCAAGGTTACGGATTTCGGGTTGTCTGTTTTTATTGAGGAAGGGAAGGTATACCGAGATATAGTAGGCAGTGCTTACTATGTTGCTCCTGAAGTGTTACGGCGTAGTTATGGAAGGGAGATAGATATTTGGAGTGCTGGAGTAATTCTGTATATTCTACTTAGTGGAGTACCTCCATTTTGGGCTGAGACTGAGAGGGGCATCTTTAATGCAATATTGGAAGGTGTAGTTGACTTTGAAAGTCAACCATGGCCGTCAATATCAGACGGTGCCAAAGACCTAGTTAGAAAGATGCTGACACAGGACCCAAAAAAGAGAATTACTTCACTGAAAGTTCTTGGTAAGATATCTCCTAAAGTTACAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009751 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

355

Amino Acids

39.38

Weight (kDa)

9.03

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	92 - 345	2.4e-72	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	93 - 342	7e-26	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61950 AT4G04710 AT4G04710 AT4G04710 AT4G04710 AT4G04720 AT4G04720 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G21940 AT4G21940 AT4G21940
fragaria_vesca	FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130
malus_domestica	MD05G1345600.v1.1 MD10G1321000.v1.1
prunus_persica	Prupe.4G021300_v2.0.a1
pyrus_communis	pycom11g19140
rosa_chinensis	RchiOBHm_Chr5g0003201
rosa_laevigata	RLG00000031086
rosa_multiflora	Rmu_co8095158.1_g000001 Rmu_co8435131.1_g000001 Rmu_sc0000146.1_g000036
rosa_roxburghii	Rroxscaffold_1G00072810
rosa_rugosa	Rorug04G0401400
rosa_samantha	Rh5AG026300 Rh5BG027500 Rh5CG029100 Rh5DG025900
rosa_wichuraiana	Rw0G023540 Rw5G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	965
AccI	GTMKAC	2 cut(s)	338, 747
AccII	CGCG	1 cut(s)	584
AciI	CCGC	3 cut(s)	227, 579, 582
AclWI	GGATC	2 cut(s)	320, 551
AcoI	YGGCCR	1 cut(s)	947
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	4 cut(s)	272, 320, 491, 867
AfiI	CCNNNNNNNGG	2 cut(s)	35, 47
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	373, 935
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	4 cut(s)	140, 514, 532, 575
AluI	AGCT	4 cut(s)	140, 514, 532, 575
Alw21I	GWGCWC	3 cut(s)	329, 516, 615
Alw26I	GTCTC	3 cut(s)	61, 115, 878
Alw44I	GTGCAC	2 cut(s)	325, 611
AlwI	GGATC	2 cut(s)	320, 551
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	2 cut(s)	301, 947
ApaLI	GTGCAC	2 cut(s)	325, 611
ApeKI	GCWGC	5 cut(s)	15, 221, 433, 448, 575
ApoI	RAATTY	1 cut(s)	661
Asp700I	GAANNNNTTC	1 cut(s)	1018
AspLEI	GCGC	4 cut(s)	226, 378, 453, 553
AspS9I	GGNCC	2 cut(s)	38, 1000
AsuHPI	GGTGA	4 cut(s)	74, 356, 397, 517
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	38, 1000
BaeGI	GKGCMC	2 cut(s)	329, 615
BanI	GGYRCC	1 cut(s)	965
BanII	GRGCYC	1 cut(s)	516
Bbv12I	GWGCWC	3 cut(s)	329, 516, 615
BbvI	GCAGC	5 cut(s)	27, 233, 445, 460, 562
BccI	CCATC	2 cut(s)	80, 502
BceAI	ACGGC	2 cut(s)	812, 934
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	3 cut(s)	61, 115, 878
BfaI	CTAG	2 cut(s)	675, 977
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	8 cut(s)	16, 222, 227, 434, 449, 576, 579, 582
BlsI	GCNGC	8 cut(s)	17, 223, 228, 435, 450, 577, 580, 583
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	2 cut(s)	38, 1000
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	2 cut(s)	38, 1000
BmiI	GGNNCC	2 cut(s)	967, 1002
BmrFI	CCNGG	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	3 cut(s)	627, 906, 978
BmuI	ACTGGG	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	855
BpuEI	CTTGAG	3 cut(s)	263, 635, 683
BsaAI	YACGTR	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	944
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 47
Bse1I	ACTGG	2 cut(s)	297, 387
Bse3DI	GCAATG	1 cut(s)	699
Bse8I	GATNNNNATC	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	944
BseGI	GGATG	2 cut(s)	62, 409
BseJI	GATNNNNATC	1 cut(s)	425
BseLI	CCNNNNNNNGG	2 cut(s)	35, 47
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	2 cut(s)	873, 879
BseNI	ACTGG	2 cut(s)	297, 387
BseRI	GAGGAG	2 cut(s)	49, 132
BseSI	GKGCMC	2 cut(s)	329, 615
BseXI	GCAGC	5 cut(s)	27, 233, 445, 460, 562
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	584
BshFI	GGCC	2 cut(s)	303, 949
BshNI	GGYRCC	1 cut(s)	965
BsiHKAI	GWGCWC	3 cut(s)	329, 516, 615
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	2 cut(s)	35, 47
BsmAI	GTCTC	3 cut(s)	61, 115, 878
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	303, 949
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	3 cut(s)	329, 516, 615
Bsp143I	GATC	5 cut(s)	312, 366, 426, 543, 646
Bsp19I	CCATGG	1 cut(s)	944
BspACI	CCGC	3 cut(s)	227, 579, 582
BspANI	GGCC	2 cut(s)	303, 949
BspCNI	CTCAG	2 cut(s)	874, 880
BspFNI	CGCG	1 cut(s)	584
BspLI	GGNNCC	2 cut(s)	967, 1002
BspPI	GGATC	2 cut(s)	320, 551
BspT107I	GGYRCC	1 cut(s)	965
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	297, 387
BssECI	CCNNGG	1 cut(s)	944
BssMI	GATC	5 cut(s)	312, 366, 426, 543, 646
BssNAI	GTATAC	1 cut(s)	748
BssT1I	CCWWGG	1 cut(s)	944
Bst1107I	GTATAC	1 cut(s)	748
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	3 cut(s)	617, 644, 965
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	210, 219
BstDEI	CTNAG	4 cut(s)	857, 882, 888, 1062
BstDSI	CCRYGG	1 cut(s)	944
BstF5I	GGATG	2 cut(s)	62, 409
BstFNI	CGCG	1 cut(s)	584
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	4 cut(s)	226, 378, 453, 553
BstKTI	GATC	5 cut(s)	315, 369, 429, 546, 649
BstMAI	GTCTC	3 cut(s)	61, 115, 878
BstMBI	GATC	5 cut(s)	312, 366, 426, 543, 646
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 214, 218, 223, 581
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	2 cut(s)	329, 615
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	5 cut(s)	27, 233, 445, 460, 562
BstZ17I	GTATAC	1 cut(s)	748
BsuRI	GGCC	2 cut(s)	303, 949
BtgI	CCRYGG	1 cut(s)	944
BtsCI	GGATG	2 cut(s)	62, 409
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	2 cut(s)	772, 1022
Cac8I	GCNNGC	2 cut(s)	210, 219
CfoI	GCGC	4 cut(s)	226, 378, 453, 553
Cfr13I	GGNCC	2 cut(s)	38, 1000
Csp6I	GTAC	4 cut(s)	271, 319, 490, 866
CviAII	CATG	4 cut(s)	430, 439, 623, 945
CviQI	GTAC	4 cut(s)	271, 319, 490, 866
DdeI	CTNAG	4 cut(s)	857, 882, 888, 1062
DpnI	GATC	5 cut(s)	314, 368, 428, 545, 648
DpnII	GATC	5 cut(s)	312, 366, 426, 543, 646
EaeI	YGGCCR	1 cut(s)	947
Ecl136II	GAGCTC	1 cut(s)	514
Eco130I	CCWWGG	1 cut(s)	944
Eco24I	GRGCYC	1 cut(s)	516
Eco32I	GATATC	2 cut(s)	409, 1044
Eco47I	GGWCC	2 cut(s)	38, 1000
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	656
EcoICRI	GAGCTC	1 cut(s)	514
EcoO109I	RGGNCCY	2 cut(s)	38, 1000
EcoRII	CCWGG	1 cut(s)	34
EcoRV	GATATC	2 cut(s)	409, 1044
EcoT14I	CCWWGG	1 cut(s)	944
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	944
FaeI	CATG	4 cut(s)	433, 442, 626, 948
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	4 cut(s)	429, 438, 622, 944
FblI	GTMKAC	2 cut(s)	338, 747
Fnu4HI	GCNGC	8 cut(s)	16, 222, 227, 434, 449, 576, 579, 582
FokI	GGATG	2 cut(s)	49, 416
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	8 cut(s)	16, 222, 227, 434, 449, 576, 579, 582
FspBI	CTAG	2 cut(s)	675, 977
GlaI	GCGC	4 cut(s)	225, 377, 452, 552
GluI	GCNGC	8 cut(s)	16, 222, 227, 434, 449, 576, 579, 582
GsaI	CCCAGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	855
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	303, 949
HapII	CCGG	1 cut(s)	522
HhaI	GCGC	4 cut(s)	226, 378, 453, 553
Hin1II	CATG	4 cut(s)	433, 442, 626, 948
Hin6I	GCGC	4 cut(s)	224, 376, 451, 551
HinP1I	GCGC	4 cut(s)	224, 376, 451, 551
HincII	GTYRAC	2 cut(s)	928, 941
HindII	GTYRAC	2 cut(s)	928, 941
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	4 cut(s)	74, 356, 397, 517
Hpy166II	GTNNAC	7 cut(s)	327, 339, 463, 613, 748, 928, 941
Hpy188I	TCNGA	2 cut(s)	568, 961
Hpy188III	TCNNGA	4 cut(s)	242, 370, 412, 785
Hpy8I	GTNNAC	7 cut(s)	327, 339, 463, 613, 748, 928, 941
HpyAV	CCTTC	5 cut(s)	680, 731, 736, 804, 911
HpyCH4III	ACNGT	3 cut(s)	617, 644, 965
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	6 cut(s)	327, 433, 499, 613, 640, 908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 214, 218, 223, 581
HpyF3I	CTNAG	4 cut(s)	857, 882, 888, 1062
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	4 cut(s)	433, 442, 626, 948
HspAI	GCGC	4 cut(s)	224, 376, 451, 551
Kzo9I	GATC	5 cut(s)	312, 366, 426, 543, 646
LmnI	GCTCC	4 cut(s)	145, 511, 529, 787
Lsp1109I	GCAGC	5 cut(s)	27, 233, 445, 460, 562
LweI	GCATC	3 cut(s)	627, 906, 978
MaeI	CTAG	2 cut(s)	675, 977
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	5 cut(s)	344, 395, 703, 792, 1054
MalI	GATC	5 cut(s)	314, 368, 428, 545, 648
MboI	GATC	5 cut(s)	312, 366, 426, 543, 646
MhlI	GDGCHC	3 cut(s)	329, 516, 615
MluCI	AATT	4 cut(s)	305, 661, 840, 1014
MmeI	TCCRAC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	1018
MseI	TTAA	2 cut(s)	264, 903
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	5 cut(s)	15, 214, 218, 223, 581
NcoI	CCATGG	1 cut(s)	944
NdeII	GATC	5 cut(s)	312, 366, 426, 543, 646
NlaIII	CATG	4 cut(s)	433, 442, 626, 948
NlaIV	GGNNCC	2 cut(s)	967, 1002
NmuCI	GTSAC	2 cut(s)	344, 395
NspI	RCATGY	1 cut(s)	442
PciI	ACATGT	1 cut(s)	438
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	1018
PkrI	GCNGC	8 cut(s)	17, 223, 228, 435, 450, 577, 580, 583
Ppu21I	YACGTR	1 cut(s)	318
PpuMI	RGGWCCY	2 cut(s)	38, 1000
PscI	ACATGT	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	516
Psp5II	RGGWCCY	2 cut(s)	38, 1000
Psp6I	CCWGG	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	967, 1002
PspPI	GGNCC	2 cut(s)	38, 1000
PspPPI	RGGWCCY	2 cut(s)	38, 1000
RsaI	GTAC	4 cut(s)	272, 320, 491, 867
RsaNI	GTAC	4 cut(s)	271, 319, 490, 866
SacI	GAGCTC	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	264, 903
SatI	GCNGC	8 cut(s)	16, 222, 227, 434, 449, 576, 579, 582
Sau3AI	GATC	5 cut(s)	312, 366, 426, 543, 646
Sau96I	GGNCC	2 cut(s)	38, 1000
ScaI	AGTACT	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	3 cut(s)	329, 516, 615
SfaNI	GCATC	3 cut(s)	627, 906, 978
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	38, 1000
SmlI	CTYRAG	3 cut(s)	242, 650, 698
SmoI	CTYRAG	3 cut(s)	242, 650, 698
Sse9I	AATT	4 cut(s)	305, 661, 840, 1014
SsiI	CCGC	3 cut(s)	227, 579, 582
SspI	AATATT	1 cut(s)	912
SspMI	CTAG	2 cut(s)	675, 977
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	944
TaaI	ACNGT	3 cut(s)	617, 644, 965
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	2 cut(s)	365, 537
TasI	AATT	4 cut(s)	305, 661, 840, 1014
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	3 cut(s)	229, 581, 584
Tru1I	TTAA	2 cut(s)	264, 903
Tru9I	TTAA	2 cut(s)	264, 903
TscAI	CASTG	2 cut(s)	772, 1029
TseFI	GTSAC	2 cut(s)	344, 395
TseI	GCWGC	5 cut(s)	15, 221, 433, 448, 575
Tsp45I	GTSAC	2 cut(s)	344, 395
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	2 cut(s)	772, 1029
VneI	GTGCAC	2 cut(s)	325, 611
VpaK11BI	GGWCC	2 cut(s)	38, 1000
XapI	RAATTY	1 cut(s)	661
XceI	RCATGY	1 cut(s)	442
XmiI	GTMKAC	2 cut(s)	338, 747
XmnI	GAANNNNTTC	1 cut(s)	1018
XspI	CTAG	2 cut(s)	675, 977
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.