AT1G63490

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004720
Physical Location & Seq
Reverse (-)
23544554 .. 23553232
8679 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63490.4

Sequence Viewer

Length: 3627 bp
ATGCTTTTGTGTGATAGTTGTAATAAAGGTTGGCATATATATTGTCTATCGCCACCGTTGAAGCATATCCCACTTGGGAACTGGTATTGCCTTGAGTGTTTAAACACTGATGAAGAGACTTTTGGCTTTGTGCCTGGTAAATGCTTATTACTTGAAGATTTTAAGCGAATTGCTGATCGAGCCAAAAGAAAGTGGTTTGGTTCAGGAACAGTGTCTAGGACGCAGATAGAGAAAAAGTTTTGGGAGATAGTAGAAGGGTCAGGTGGTGAGGTTGAAGTTATGTATGGTAATGACTTGGATACTTCTGTTTACGGGAGTGGTTTTCCTCGAATAGGCGACCAAAGACCAGAATCAGTTGAGGCAGATATATGGGATGAGTATTGTGGTAGCCCCTGGAATCTCAATAACATGCCTAAGTTGAAAGGATCTATGCTTCAGGCCATTCGACATAACATTAATGGTGTTACAGTGCCTTGGCTATATCTTGGAATGCTCTTCTCTTCTTTTTGTTGGCATTTTGAGGACCATTGTTTTTACTCTGTCAATTATCTACACTGGGGAGAGGCAAAATGTTGGTATGGTATTCCAGGCAGTGCTGCTAGTGCTTTTGAAAAGGTCATGCGAAAAACCCTACCCGATCTCTTTGATGCTCAGCCAGATTTGCTCTTTCAACTAGTTACCATGTTGAGTCCGACTGTTTTACAAGAAAATAAAGTCCCGGTCTACACAGTATTACAGGAGCCAGGAAACTTCGTGATCACATTTCCAAAATCCTTTCATGCTGGATTCAATTTTGGTCTAAATTGTGCAGAGGCCGTCAACTTTGCTACTGCTGATTGGCTACCTTATGGTGGTTCTGGGGCGGAGCTGTATCGGCTGTACCGGAAACCTTCAGTCATATCTCATGAAGAGCTTCTCTGCGTGGTAGCTAAGGGAAACTGCTGCAATAACGAAGGGTCAATACATTTGAAGAAAGAATTGCTCAGAATATACAGCAAGGAAAAAACCTGGAGAGAGCAGCTCTGGAAAAGTGGTATTTTGAGATCTTCTCCTATGTTTGTGCCTGAATGCGCTGATTCTGTGGGCATCGAAGAGGATCCAACATGCATCATATGCCAGCAGTTTCTTCATCTTTCTGCTATCGTCTGCAATTGCAGGCCATCTGTTTTTGCATGCTTAGAGCACTGGAAGCATCTTTGTGAATGTGAACCTACGAAGTTGCGACTTGAATATCGTTATACCCTTGCCGAGTTAGATATGATGGTACAAGAAGTTGAAAAGTTTGGTGGGTGCAAAACACAAGAAACCAAAATCTCACAACGGCCGAGTTCAGGCACCAAACGATCTATTGCTTTAAATAAAAAGGAGGGAATGCAAGTGAGTCAGGCACGGCCAGCAGACAAATGGCTTCTTAGAGCATCAAAGGTTCTTGACGCTGCGTTTTCTAGTGTTGAATATGCCACCCTTTTGAAGGAATCAGAACAGTTTCTTTGGGCTGGATCAGAAATGGACCGTGTACGAGATGTTACAAAAAGTTTGAACAAAGCAAAGATATGGGCTGAAGCTGTTAGTGACTGTCTTTCAAAAGTCGAAGGTGAAGTCAACGATGATTCAATGAAAGTTCACTTGGAATTTATTGATGAGTTGCTGAGAGTTAATCCTGTTCCTTGCTTTAATTCTGGTTATCTGAAACTAAAGGACTATGCTGAAGAAGCTAGAAAATTGTCCGAGAAAATCGATTCAGCTCTCTCGAGTAGCCCAACTATCACCCAGCTGGAGCTATTGCATTCTGAAGTCTCCAGATCGCCAATCTCCCTAAAAAAACACGAGATCTTGTCAAAGAAAATCTCTTCCGCAAAGATGTTAGCTAAAAGGGCGAAACGCTATCTCACAGACGCTAAACCTCCAGGAATTGAAATGGATGCACTTTTCAAGCTAAATTCAGAGATGTTAGAGCTTCATGTTCAACTTCCAGAAACAGAAGGGATTCTGGATTTGGTAAAGAAATCAGAATCAGCCCGTGATAAAAGTAACAAAGTTTTGACTGGTTCTTTATCTCTCGAGAATGTGGAAGAGTTGCTTCATGAATTCGATAGTTTCAGCATTAACGTTCCTGAGTTGAATATCCTGAGGCAGTATCATGTTGACACTTTGTCTTGGATTTCACGCTTTAATGATGTAATGGTTGATGTTCGTGAAGGCAAGGACCAACGAAAGCTAATTAGTGACCTCAGTTCCCTTCTACGGGATGGAGCATCCTTAGGCATTCAAGTTGAAGGACTCCCTCTTGTTGAAGTTGAATTGAAGAAGGCATCTTGCCGGGAAAAAGCTCGAACGGTTTATACTGCAAGAAAATCTCTGGATTTCATTGAGCAACTGCTCTCGGAAGCTGTTATACTACACATCGAAGAGGAGGAGATATTTGTTGAGATCTCGGGAATTTTGTCAACAGCACGGTGTTGGGAGGAAAGAGCAAGCACTATCCTTGAAAATGAAACTCAGATGTACGAGCTTAAAGATCTCGTAAGGATGTCAGTCAACATTGATGCGGTTTTACCTACTCTGCAAGGCATAGAGAACACAATCTCGTCGGCTGAAACTTGGCTTCAGAAATCTGAGCCTTTTCTATCAGCCACTTCCTCTATGGCATCATCTCCATGTTCTATGCTTGAACTTCCTGTATTAAAGGATCTAGTTACTCAGGCTAAATTGCTCAATGTTCAGCTTCAAGAGCCACGAATTCTTGAAACATTGTTGCTTAACTGCGAGAGGTGGCAGTGTGATAATCATCAGCTCTTGCAAGAAACTGAAGATTTGTTGGACAATGCGAAAATAGATGATGGCACGCATAGCAATATCCTTCCGAAGATAATGGATTTGATAACCAGAGTGGACTCCGCTAGGAGATCTGGTCTGGCCCTTGGTCTCAATTTCGATGAACTTCCCAAACTTCGAACTGCAAGTCTAAAACTAGGATGGTGTTGTAAGACCATCACGTTAAGCTCTAGCTCACCTACCTCTGAGTTGCTAGAAGATGTTGGAAAGCCCTCGTTACAGCATATTCAGCAGCACTTAAAAGAGGGACAAACACTTGAAATATTACCTGAAGAGTATTACTTAGGCAAGAGACTCATGGAGTTAAAAGACACTGGACTGGAGTGGGCAAAACGAGCTAGAAAGGTGGTAACAGACTCAGGTGCTCTTGCCTTGGAAGATGTTTTCGAGCTTATTTCTGAGGGTGAAAACTTACCTGTTCATGCAGAGCAGGAACTTCAGTCTTTACGAGCTCGGAGTATGTTACACTGCATTTGTCTAAAGCCATACAACTCAAGATCCATGGTTTCTTGTAGTCAATGTGGCGAATGGTATCACACCTATTGTTTAAAGCTTCATTGGCGGCCTAAGGCTTATGTCTGCTCCGCTTGCTGTCCACTGGCAGAAACCACTCCACAGATCGATCCCGCCAGAGCAACAGAGCCAGAGAGACCGTCTCTGAACCAAAGACGGACAAGAATGGTCGCGACTGATGCAGCAGTTAATGACTTAAAGTGGAAAACCCGAAAACACATCAAACGGACAACTAAACGGAGTCCTCAGGTTCATATTCTTCCCTGGTTTTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0003712 GO:0003713 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0008214 GO:0008270 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031057 GO:0031063 GO:0031064 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031490 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032922 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034647 GO:0034648 GO:0034720 GO:0034721 GO:0035064 GO:0036211 GO:0042393 GO:0043086 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051090 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090311 GO:0097159 GO:0140030 GO:0140034 GO:0140096 GO:0140110 GO:1901363 GO:1901564 GO:1901725 GO:1901726 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990837 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID JmjC JmjN PHD PLU-1 zf-C5HC2

Protein Analysis

1208

Amino Acids

137.05

Weight (kDa)

5.87

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 32 - 65 1.5e-16 jmjN domain
ARID PF01388 102 - 188 2e-13 ARID/BRIGHT DNA binding domain
PHD PF00628 242 - 286 2e-08 PHD-finger
JmjC PF02373 412 - 528 6.4e-43 JmjC domain, hydroxylase
zf-C5HC2 PF02928 622 - 673 3.1e-15 C5HC2 zinc finger
PLU-1 PF08429 892 - 982 6.6e-08 PLU-1-like protein
PLU-1 PF08429 993 - 1180 8.7e-15 PLU-1-like protein
PLU-1 PF08429 1144 - 1343 4.2e-06 PLU-1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1334
AccI GTMKAC 1 cut(s) 723
AccII CGCG 1 cut(s) 3521
AciI CCGC 7 cut(s) 863, 1854, 2549, 2898, 3397, 3420, 3462
AclI AACGTT 1 cut(s) 2109
AclWI GGATC 7 cut(s) 433, 1091, 1104, 1507, 2697, 3327, 3452
AcoI YGGCCR 2 cut(s) 1322, 1391
AcsI RAATTY 5 cut(s) 1631, 1939, 2087, 2439, 2739
AcuI CTGAAG 9 cut(s) 419, 876, 1581, 1728, 1812, 2591, 2829, 3126, 3257
AfaI GTAC 4 cut(s) 881, 1266, 1518, 2507
AfiI CCNNNNNNNGG 6 cut(s) 332, 851, 1331, 1471, 2244, 2245
AhdI GACNNNNNGTC 1 cut(s) 2152
AhlI ACTAGT 1 cut(s) 673
AjnI CCWGG 7 cut(s) 133, 392, 586, 742, 1007, 1906, 3611
AjuI GAANNNNNNNTTGG 4 cut(s) 105, 137, 1610, 1642
Alw21I GWGCWC 3 cut(s) 1185, 3202, 3289
Alw26I GTCTC 6 cut(s) 110, 1801, 2930, 3121, 3478, 3495
AlwI GGATC 7 cut(s) 433, 1091, 1104, 1507, 2697, 3327, 3452
Ama87I CYCGRG 3 cut(s) 1750, 2060, 2434
AoxI GGCC 7 cut(s) 438, 813, 1157, 1322, 1391, 2916, 3398
ApeKI GCWGC 6 cut(s) 596, 942, 1018, 1436, 3067, 3530
ApoI RAATTY 5 cut(s) 1631, 1939, 2087, 2439, 2739
ArsI GACNNNNNNTTYG 4 cut(s) 1584, 1616, 2947, 2979
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 3 cut(s) 912, 1485, 1986
AspLEI GCGC 1 cut(s) 1073
AspS9I GGNCC 4 cut(s) 523, 1510, 2206, 2917
AsuC2I CCSGG 2 cut(s) 719, 2321
AsuHPI GGTGA 5 cut(s) 278, 1607, 1759, 3003, 3251
AsuII TTCGAA 1 cut(s) 2953
AvaI CYCGRG 3 cut(s) 1750, 2060, 2434
AvaII GGWCC 3 cut(s) 523, 1510, 2206
AxyI CCTNAGG 4 cut(s) 2129, 2260, 3402, 3594
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BamHI GGATCC 1 cut(s) 1096
BanI GGYRCC 1 cut(s) 1334
BanII GRGCYC 1 cut(s) 3289
BarI GAAGNNNNNNTAC 4 cut(s) 945, 977, 2379, 2411
BauI CACGAG 1 cut(s) 1826
Bbv12I GWGCWC 3 cut(s) 1185, 3202, 3289
BbvI GCAGC 6 cut(s) 583, 929, 1030, 1423, 3079, 3542
BccI CCATC 6 cut(s) 1168, 1255, 2243, 2834, 2970, 2999
BceAI ACGGC 3 cut(s) 800, 1337, 1406
BciT130I CCWGG 7 cut(s) 135, 394, 588, 744, 1009, 1908, 3613
BciVI GTATCC 1 cut(s) 292
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 2 cut(s) 719, 2321
BcoDI GTCTC 6 cut(s) 110, 1801, 2930, 3121, 3478, 3495
BcuI ACTAGT 1 cut(s) 673
BfuI GTATCC 1 cut(s) 292
BglII AGATCT 5 cut(s) 1043, 1830, 2430, 2518, 2906
BisI GCNGC 7 cut(s) 597, 943, 1019, 1437, 3068, 3398, 3531
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 7 cut(s) 598, 944, 1020, 1438, 3069, 3399, 3532
Bme1390I CCNGG 9 cut(s) 135, 394, 588, 719, 744, 1009, 1908, 2321, 3613
Bme18I GGWCC 3 cut(s) 523, 1510, 2206
BmeRI GACNNNNNGTC 1 cut(s) 2152
BmeT110I CYCGRG 3 cut(s) 1750, 2060, 2434
BmgT120I GGNCC 4 cut(s) 523, 1510, 2206, 2917
BmiI GGNNCC 3 cut(s) 741, 1098, 1336
BmrFI CCNGG 9 cut(s) 135, 394, 588, 719, 744, 1009, 1908, 2321, 3613
BmrI ACTGGG 1 cut(s) 565
BmuI ACTGGG 1 cut(s) 565
BplI GAGNNNNNCTC 6 cut(s) 1005, 1037, 1033, 1065, 3475, 3507
BpmI CTGGAG 5 cut(s) 1030, 1783, 1796, 1890, 3176
Bpu10I CCTNAGC 1 cut(s) 930
Bpu1102I GCTNAGC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 2953
BpuEI CTTGAG 2 cut(s) 113, 3313
BpuMI CCSGG 2 cut(s) 719, 2321
Bsa29I ATCGAT 2 cut(s) 1737, 3456
BsaBI GATNNNNATC 1 cut(s) 2787
BsaI GGTCTC 2 cut(s) 2930, 3478
BsaJI CCNNGG 6 cut(s) 392, 473, 2920, 3207, 3336, 3611
BsaWI WCCGGW 1 cut(s) 882
BsaXI ACNNNNNCTCC 2 cut(s) 2896, 2926
Bsc4I CCNNNNNNNGG 6 cut(s) 332, 851, 1331, 1471, 2244, 2245
Bse1I ACTGG 7 cut(s) 86, 560, 1190, 2050, 3154, 3159, 3438
Bse21I CCTNAGG 4 cut(s) 2129, 2260, 3402, 3594
Bse8I GATNNNNATC 1 cut(s) 2787
BseBI CCWGG 7 cut(s) 135, 394, 588, 744, 1009, 1908, 3613
BseCI ATCGAT 2 cut(s) 1737, 3456
BseDI CCNNGG 6 cut(s) 392, 473, 2920, 3207, 3336, 3611
BseGI GGATG 6 cut(s) 379, 1927, 2254, 2255, 2535, 2981
BseJI GATNNNNATC 1 cut(s) 2787
BseLI CCNNNNNNNGG 6 cut(s) 332, 851, 1331, 1471, 2244, 2245
BseNI ACTGG 7 cut(s) 86, 560, 1190, 2050, 3154, 3159, 3438
BseRI GAGGAG 2 cut(s) 2426, 2429
BseX3I CGGCCG 1 cut(s) 1322
BseXI GCAGC 6 cut(s) 583, 929, 1030, 1423, 3079, 3542
BseYI CCCAGC 1 cut(s) 1770
BsgI GTGCAG 1 cut(s) 828
Bsh1236I CGCG 1 cut(s) 3521
Bsh1285I CGRYCG 1 cut(s) 1325
BshFI GGCC 7 cut(s) 440, 815, 1159, 1324, 1393, 2918, 3400
BshNI GGYRCC 1 cut(s) 1334
BshVI ATCGAT 2 cut(s) 1737, 3456
BsiEI CGRYCG 1 cut(s) 1325
BsiHKAI GWGCWC 3 cut(s) 1185, 3202, 3289
BsiHKCI CYCGRG 3 cut(s) 1750, 2060, 2434
BsiSI CCGG 3 cut(s) 719, 883, 2320
BslFI GGGAC 2 cut(s) 701, 3096
BslI CCNNNNNNNGG 6 cut(s) 332, 851, 1331, 1471, 2244, 2245
BsmAI GTCTC 6 cut(s) 110, 1801, 2930, 3121, 3478, 3495
BsmBI CGTCTC 1 cut(s) 3495
BsmFI GGGAC 2 cut(s) 701, 3096
BsmI GAATGC 5 cut(s) 495, 1073, 1377, 1786, 2265
BsnI GGCC 7 cut(s) 440, 815, 1159, 1324, 1393, 2918, 3400
Bso31I GGTCTC 2 cut(s) 2930, 3478
BsoBI CYCGRG 3 cut(s) 1750, 2060, 2434
Bsp119I TTCGAA 1 cut(s) 2953
Bsp1286I GDGCHC 3 cut(s) 1185, 3202, 3289
Bsp1720I GCTNAGC 1 cut(s) 651
Bsp19I CCATGG 1 cut(s) 3336
Bsp68I TCGCGA 1 cut(s) 3521
BspACI CCGC 7 cut(s) 863, 1854, 2549, 2898, 3397, 3420, 3462
BspANI GGCC 7 cut(s) 440, 815, 1159, 1324, 1393, 2918, 3400
BspDI ATCGAT 2 cut(s) 1737, 3456
BspFNI CGCG 1 cut(s) 3521
BspHI TCATGA 2 cut(s) 904, 2083
BspLI GGNNCC 3 cut(s) 741, 1098, 1336
BspPI GGATC 7 cut(s) 433, 1091, 1104, 1507, 2697, 3327, 3452
BspQI GCTCTTC 2 cut(s) 500, 903
BspT104I TTCGAA 1 cut(s) 2953
BspT107I GGYRCC 1 cut(s) 1334
BspTNI GGTCTC 2 cut(s) 2930, 3478
BsrI ACTGG 7 cut(s) 86, 560, 1190, 2050, 3154, 3159, 3438
BssECI CCNNGG 6 cut(s) 392, 473, 2920, 3207, 3336, 3611
BssSI CACGAG 1 cut(s) 1826
BssT1I CCWWGG 4 cut(s) 473, 2920, 3207, 3336
Bst2BI CACGAG 1 cut(s) 1826
Bst2UI CCWGG 7 cut(s) 135, 394, 588, 744, 1009, 1908, 3613
Bst6I CTCTTC 9 cut(s) 108, 500, 505, 903, 1086, 1855, 2067, 2403, 3102
BstAPI GCANNNNNTGC 1 cut(s) 1113
BstBI TTCGAA 1 cut(s) 2953
BstC8I GCNNGC 7 cut(s) 1118, 1157, 1174, 1395, 2476, 2846, 3424
BstDSI CCRYGG 1 cut(s) 3336
BstENI CCTNNNNNAGG 2 cut(s) 330, 1469
BstF5I GGATG 6 cut(s) 379, 1927, 2254, 2255, 2535, 2981
BstFNI CGCG 1 cut(s) 3521
BstHHI GCGC 1 cut(s) 1073
BstMAI GTCTC 6 cut(s) 110, 1801, 2930, 3121, 3478, 3495
BstMCI CGRYCG 1 cut(s) 1325
BstNI CCWGG 7 cut(s) 135, 394, 588, 744, 1009, 1908, 3613
BstNSI RCATGY 3 cut(s) 412, 1107, 1176
BstSCI CCNGG 9 cut(s) 133, 392, 586, 717, 742, 1007, 1906, 2319, 3611
BstUI CGCG 1 cut(s) 3521
BstV1I GCAGC 6 cut(s) 583, 929, 1030, 1423, 3079, 3542
BstX2I RGATCY 9 cut(s) 425, 1043, 1096, 1830, 2430, 2518, 2689, 2906, 3332
BstYI RGATCY 9 cut(s) 425, 1043, 1096, 1830, 2430, 2518, 2689, 2906, 3332
BstZI CGGCCG 1 cut(s) 1322
Bsu15I ATCGAT 2 cut(s) 1737, 3456
Bsu36I CCTNAGG 4 cut(s) 2129, 2260, 3402, 3594
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 7 cut(s) 440, 815, 1159, 1324, 1393, 2918, 3400
BsuTUI ATCGAT 2 cut(s) 1737, 3456
BtgI CCRYGG 1 cut(s) 3336
BtsCI GGATG 6 cut(s) 379, 1927, 2254, 2255, 2535, 2981
BtsI GCAGTG 3 cut(s) 598, 2783, 3301
BtuMI TCGCGA 1 cut(s) 3521
Cac8I GCNNGC 7 cut(s) 1118, 1157, 1174, 1395, 2476, 2846, 3424
CciI TCATGA 2 cut(s) 904, 2083
CfoI GCGC 1 cut(s) 1073
Cfr13I GGNCC 4 cut(s) 523, 1510, 2206, 2917
ClaI ATCGAT 2 cut(s) 1737, 3456
CseI GACGC 3 cut(s) 229, 1442, 1904
Csp6I GTAC 4 cut(s) 880, 1265, 1517, 2506
CviQI GTAC 4 cut(s) 880, 1265, 1517, 2506
DraI TTTAAA 3 cut(s) 102, 1356, 3384
DriI GACNNNNNGTC 1 cut(s) 2152
EaeI YGGCCR 2 cut(s) 1322, 1391
EagI CGGCCG 1 cut(s) 1322
Eam1104I CTCTTC 9 cut(s) 108, 500, 505, 903, 1086, 1855, 2067, 2403, 3102
Eam1105I GACNNNNNGTC 1 cut(s) 2152
EarI CTCTTC 9 cut(s) 108, 500, 505, 903, 1086, 1855, 2067, 2403, 3102
EciI GGCGGA 1 cut(s) 878
Ecl136II GAGCTC 1 cut(s) 3287
EclXI CGGCCG 1 cut(s) 1322
Eco130I CCWWGG 4 cut(s) 473, 2920, 3207, 3336
Eco24I GRGCYC 1 cut(s) 3289
Eco31I GGTCTC 2 cut(s) 2930, 3478
Eco47I GGWCC 3 cut(s) 523, 1510, 2206
Eco52I CGGCCG 1 cut(s) 1322
Eco53kI GAGCTC 1 cut(s) 3287
Eco57I CTGAAG 9 cut(s) 419, 876, 1581, 1728, 1812, 2591, 2829, 3126, 3257
Eco81I CCTNAGG 4 cut(s) 2129, 2260, 3402, 3594
Eco88I CYCGRG 3 cut(s) 1750, 2060, 2434
EcoICRI GAGCTC 1 cut(s) 3287
EcoNI CCTNNNNNAGG 2 cut(s) 330, 1469
EcoRI GAATTC 2 cut(s) 2087, 2739
EcoRII CCWGG 7 cut(s) 133, 392, 586, 742, 1007, 1906, 3611
EcoT14I CCWWGG 4 cut(s) 473, 2920, 3207, 3336
EcoT22I ATGCAT 1 cut(s) 1109
EcoT38I GRGCYC 1 cut(s) 3289
ErhI CCWWGG 4 cut(s) 473, 2920, 3207, 3336
Esp3I CGTCTC 1 cut(s) 3495
FalI AAGNNNNNCTT 2 cut(s) 2064, 2096
FaqI GGGAC 2 cut(s) 701, 3096
FauI CCCGC 1 cut(s) 3469
FauNDI CATATG 1 cut(s) 1112
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 723
Fnu4HI GCNGC 7 cut(s) 597, 943, 1019, 1437, 3068, 3398, 3531
FokI GGATG 6 cut(s) 386, 1934, 2242, 2261, 2542, 2988
FriOI GRGCYC 1 cut(s) 3289
Fsp4HI GCNGC 7 cut(s) 597, 943, 1019, 1437, 3068, 3398, 3531
GlaI GCGC 1 cut(s) 1072
GluI GCNGC 7 cut(s) 597, 943, 1019, 1437, 3068, 3398, 3531
GsaI CCCAGC 1 cut(s) 1774
GsuI CTGGAG 5 cut(s) 1030, 1783, 1796, 1890, 3176
HaeIII GGCC 7 cut(s) 440, 815, 1159, 1324, 1393, 2918, 3400
HapII CCGG 3 cut(s) 719, 883, 2320
HgaI GACGC 3 cut(s) 229, 1442, 1904
HhaI GCGC 1 cut(s) 1073
Hin6I GCGC 1 cut(s) 1071
HinP1I GCGC 1 cut(s) 1071
HincII GTYRAC 5 cut(s) 820, 1603, 2146, 2448, 2539
HindII GTYRAC 5 cut(s) 820, 1603, 2146, 2448, 2539
HindIII AAGCTT 1 cut(s) 3386
HpaII CCGG 3 cut(s) 719, 883, 2320
HphI GGTGA 5 cut(s) 278, 1607, 1759, 3003, 3251
Hpy99I CGWCG 1 cut(s) 2593
HpyCH4IV ACGT 2 cut(s) 2109, 2996
HpySE526I ACGT 2 cut(s) 2109, 2996
HspAI GCGC 1 cut(s) 1071
Ksp22I TGATCA 1 cut(s) 756
LguI GCTCTTC 2 cut(s) 500, 903
LmnI GCTCC 5 cut(s) 739, 865, 1777, 2252, 3422
Lsp1109I GCAGC 6 cut(s) 583, 929, 1030, 1423, 3079, 3542
MaeII ACGT 2 cut(s) 2109, 2996
MfeI CAATTG 1 cut(s) 1150
MflI RGATCY 9 cut(s) 425, 1043, 1096, 1830, 2430, 2518, 2689, 2906, 3332
MhlI GDGCHC 3 cut(s) 1185, 3202, 3289
MlyI GAGTC 7 cut(s) 697, 1390, 2274, 2888, 3123, 3185, 3598
MmeI TCCRAC 4 cut(s) 716, 1124, 2799, 3019
Mph1103I ATGCAT 1 cut(s) 1109
MroXI GAANNNNTTC 3 cut(s) 912, 1485, 1986
MslI CAYNNNNRTG 2 cut(s) 1197, 2656
MspA1I CMGCKG 1 cut(s) 1774
MspI CCGG 3 cut(s) 719, 883, 2320
MspR9I CCNGG 9 cut(s) 135, 394, 588, 719, 744, 1009, 1908, 2321, 3613
MssI GTTTAAAC 1 cut(s) 102
MunI CAATTG 1 cut(s) 1150
Mva1269I GAATGC 5 cut(s) 495, 1073, 1377, 1786, 2265
MvaI CCWGG 7 cut(s) 135, 394, 588, 744, 1009, 1908, 3613
MvnI CGCG 1 cut(s) 3521
NciI CCSGG 2 cut(s) 719, 2321
NcoI CCATGG 1 cut(s) 3336
NdeI CATATG 1 cut(s) 1112
NlaIV GGNNCC 3 cut(s) 741, 1098, 1336
NmeAIII GCCGAG 2 cut(s) 1273, 1350
NmuCI GTSAC 2 cut(s) 1571, 2225
NruI TCGCGA 1 cut(s) 3521
NsiI ATGCAT 1 cut(s) 1109
NspI RCATGY 3 cut(s) 412, 1107, 1176
NspV TTCGAA 1 cut(s) 2953
PaeI GCATGC 1 cut(s) 1176
PaeR7I CTCGAG 2 cut(s) 1750, 2060
PagI TCATGA 2 cut(s) 904, 2083
PciSI GCTCTTC 2 cut(s) 500, 903
PctI GAATGC 5 cut(s) 495, 1073, 1377, 1786, 2265
PdmI GAANNNNTTC 3 cut(s) 912, 1485, 1986
PfeI GAWTC 9 cut(s) 350, 397, 786, 1076, 1475, 1610, 1739, 1987, 2012
PfoI TCCNGGA 1 cut(s) 1906
PkrI GCNGC 7 cut(s) 598, 944, 1020, 1438, 3069, 3399, 3532
PleI GAGTC 7 cut(s) 696, 1389, 2274, 2888, 3123, 3185, 3597
PmeI GTTTAAAC 1 cut(s) 102
PpsI GAGTC 7 cut(s) 696, 1389, 2274, 2888, 3123, 3185, 3597
PshBI ATTAAT 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 3289
Psp1406I AACGTT 1 cut(s) 2109
Psp6I CCWGG 7 cut(s) 133, 392, 586, 742, 1007, 1906, 3611
PspFI CCCAGC 1 cut(s) 1770
PspGI CCWGG 7 cut(s) 133, 392, 586, 742, 1007, 1906, 3611
PspN4I GGNNCC 3 cut(s) 741, 1098, 1336
PspPI GGNCC 4 cut(s) 523, 1510, 2206, 2917
PsrI GAACNNNNNNTAC 2 cut(s) 2326, 2358
PsuI RGATCY 9 cut(s) 425, 1043, 1096, 1830, 2430, 2518, 2689, 2906, 3332
PvuII CAGCTG 1 cut(s) 1774
RruI TCGCGA 1 cut(s) 3521
RsaI GTAC 4 cut(s) 881, 1266, 1518, 2507
RsaNI GTAC 4 cut(s) 880, 1265, 1517, 2506
RseI CAYNNNNRTG 2 cut(s) 1197, 2656
SacI GAGCTC 1 cut(s) 3289
SapI GCTCTTC 2 cut(s) 500, 903
SatI GCNGC 7 cut(s) 597, 943, 1019, 1437, 3068, 3398, 3531
Sau96I GGNCC 4 cut(s) 523, 1510, 2206, 2917
SchI GAGTC 7 cut(s) 697, 1390, 2274, 2888, 3123, 3185, 3598
ScrFI CCNGG 9 cut(s) 135, 394, 588, 719, 744, 1009, 1908, 2321, 3613
SduI GDGCHC 3 cut(s) 1185, 3202, 3289
Sfr274I CTCGAG 2 cut(s) 1750, 2060
SfuI TTCGAA 1 cut(s) 2953
SinI GGWCC 3 cut(s) 523, 1510, 2206
SlaI CTCGAG 2 cut(s) 1750, 2060
SmiMI CAYNNNNRTG 2 cut(s) 1197, 2656
SmlI CTYRAG 4 cut(s) 92, 1750, 2060, 3328
SmoI CTYRAG 4 cut(s) 92, 1750, 2060, 3328
SpeI ACTAGT 1 cut(s) 673
SphI GCATGC 1 cut(s) 1176
SsiI CCGC 7 cut(s) 863, 1854, 2549, 2898, 3397, 3420, 3462
SspI AATATT 1 cut(s) 3099
SstI GAGCTC 1 cut(s) 3289
StyD4I CCNGG 9 cut(s) 133, 392, 586, 717, 742, 1007, 1906, 2319, 3611
StyI CCWWGG 4 cut(s) 473, 2920, 3207, 3336
TaiI ACGT 2 cut(s) 2112, 2999
TauI GCSGC 1 cut(s) 3400
TfiI GAWTC 9 cut(s) 350, 397, 786, 1076, 1475, 1610, 1739, 1987, 2012
TseFI GTSAC 2 cut(s) 1571, 2225
TseI GCWGC 6 cut(s) 596, 942, 1018, 1436, 3067, 3530
Tsp45I GTSAC 2 cut(s) 1571, 2225
TspGWI ACGGA 3 cut(s) 3520, 3589, 3601
VpaK11BI GGWCC 3 cut(s) 523, 1510, 2206
VspI ATTAAT 1 cut(s) 456
XagI CCTNNNNNAGG 2 cut(s) 330, 1469
XapI RAATTY 5 cut(s) 1631, 1939, 2087, 2439, 2739
XceI RCATGY 3 cut(s) 412, 1107, 1176
XcmI CCANNNNNNNNNTGG 3 cut(s) 78, 1401, 2641
XhoI CTCGAG 2 cut(s) 1750, 2060
XmiI GTMKAC 1 cut(s) 723
XmnI GAANNNNTTC 3 cut(s) 912, 1485, 1986
Zsp2I ATGCAT 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.