lysine-specific demethylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63490 AT1G63490 AT1G63490 AT1G63490 |
| fragaria_vesca | FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 |
| malus_domestica | MD06G1081900.v1.1 MD14G1103700.v1.1 |
| prunus_persica | Prupe.5G099000_v2.0.a1 Prupe.5G099000_v2.0.a1 Prupe.5G099000_v2.0.a1 Prupe.5G099000_v2.0.a1 |
| pyrus_communis | pycom06g07880 pycom14g09970 |
| rosa_chinensis | RchiOBHm_Chr7g0197841 |
| rosa_laevigata | RLG00000003906 |
| rosa_multiflora | Rmu_co8257227.1_g000001 Rmu_co8363405.1_g000001 Rmu_sc0034285.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00258150 |
| rosa_rugosa | Rorug07G0043800 Rorug07G0043900 |
| rosa_samantha | Rh7AG167800 Rh7BG170700 Rh7CG177100 Rh7DG169600 |
| rosa_wichuraiana | Rw7G014620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 147, 573 |
| AarI | CACCTGC | 1 cut(s) | 268 |
| Acc16I | TGCGCA | 2 cut(s) | 1403, 4316 |
| Acc36I | ACCTGC | 2 cut(s) | 268, 835 |
| Acc65I | GGTACC | 1 cut(s) | 1865 |
| AccB1I | GGYRCC | 3 cut(s) | 1865, 2455, 3600 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1149 |
| AccI | GTMKAC | 1 cut(s) | 3465 |
| AciI | CCGC | 6 cut(s) | 348, 361, 1613, 2302, 2453, 4275 |
| AclWI | GGATC | 8 cut(s) | 79, 994, 1213, 1831, 2793, 3006, 3626, 4392 |
| AcoI | YGGCCR | 1 cut(s) | 4560 |
| AcuI | CTGAAG | 5 cut(s) | 2364, 2933, 3246, 3993, 4212 |
| AcvI | CACGTG | 1 cut(s) | 1109 |
| AfaI | GTAC | 7 cut(s) | 323, 1358, 1867, 2695, 2930, 3856, 3981 |
| AflII | CTTAAG | 1 cut(s) | 3740 |
| AflIII | ACRYGT | 4 cut(s) | 1108, 2690, 3334, 3957 |
| AjnI | CCWGG | 5 cut(s) | 853, 913, 1366, 1522, 4061 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2402, 2434 |
| AleI | CACNNNNGTG | 1 cut(s) | 1977 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2397, 2429 |
| Alw21I | GWGCWC | 3 cut(s) | 515, 2751, 3404 |
| AlwI | GGATC | 8 cut(s) | 79, 994, 1213, 1831, 2793, 3006, 3626, 4392 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 989, 1595, 2589 |
| Ama87I | CYCGRG | 1 cut(s) | 158 |
| ApeKI | GCWGC | 8 cut(s) | 274, 2699, 3239, 3760, 3836, 4129, 4154, 4365 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2268, 3209, 4513 |
| Asp718I | GGTACC | 1 cut(s) | 1865 |
| AspA2I | CCTAGG | 1 cut(s) | 17 |
| AspLEI | GCGC | 5 cut(s) | 285, 1404, 2199, 3121, 4317 |
| AspS9I | GGNCC | 6 cut(s) | 156, 340, 594, 1876, 2155, 2840 |
| AsuC2I | CCSGG | 1 cut(s) | 4539 |
| AsuNHI | GCTAGC | 1 cut(s) | 1705 |
| AvaI | CYCGRG | 1 cut(s) | 158 |
| AvaII | GGWCC | 3 cut(s) | 340, 1876, 2840 |
| AvrII | CCTAGG | 1 cut(s) | 17 |
| AxyI | CCTNAGG | 1 cut(s) | 4094 |
| BaeGI | GKGCMC | 1 cut(s) | 2460 |
| BalI | TGGCCA | 1 cut(s) | 4562 |
| BanI | GGYRCC | 3 cut(s) | 1865, 2455, 3600 |
| BanII | GRGCYC | 5 cut(s) | 130, 1172, 2751, 3404, 3900 |
| BauI | CACGAG | 1 cut(s) | 2465 |
| BbrPI | CACGTG | 1 cut(s) | 1109 |
| BbsI | GAAGAC | 4 cut(s) | 1403, 3333, 3638, 4437 |
| Bbv12I | GWGCWC | 3 cut(s) | 515, 2751, 3404 |
| BbvCI | CCTCAGC | 1 cut(s) | 3122 |
| BbvI | GCAGC | 8 cut(s) | 261, 2686, 3226, 3747, 3823, 4141, 4141, 4352 |
| BceAI | ACGGC | 1 cut(s) | 2145 |
| BciT130I | CCWGG | 5 cut(s) | 855, 915, 1368, 1524, 4063 |
| BciVI | GTATCC | 1 cut(s) | 1072 |
| BclI | TGATCA | 3 cut(s) | 736, 2322, 3064 |
| BcnI | CCSGG | 1 cut(s) | 4539 |
| BfaI | CTAG | 7 cut(s) | 18, 1706, 1958, 3867, 3983, 4301, 4439 |
| BfmI | CTRYAG | 5 cut(s) | 275, 1162, 1514, 1771, 3837 |
| BfoI | RGCGCY | 1 cut(s) | 3122 |
| BfrI | CTTAAG | 1 cut(s) | 3740 |
| BfuAI | ACCTGC | 2 cut(s) | 268, 835 |
| BfuI | GTATCC | 1 cut(s) | 1072 |
| BglII | AGATCT | 1 cut(s) | 1550 |
| BisI | GCNGC | 8 cut(s) | 275, 2700, 3240, 3761, 3837, 4130, 4155, 4366 |
| BlnI | CCTAGG | 1 cut(s) | 17 |
| BlsI | GCNGC | 8 cut(s) | 276, 2701, 3241, 3762, 3838, 4131, 4156, 4367 |
| BmcAI | AGTACT | 1 cut(s) | 3981 |
| Bme1390I | CCNGG | 6 cut(s) | 855, 915, 1368, 1524, 4063, 4539 |
| Bme18I | GGWCC | 3 cut(s) | 340, 1876, 2840 |
| BmeT110I | CYCGRG | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 6 cut(s) | 156, 340, 594, 1876, 2155, 2840 |
| BmrFI | CCNGG | 6 cut(s) | 855, 915, 1368, 1524, 4063, 4539 |
| BmrI | ACTGGG | 2 cut(s) | 1345, 2481 |
| BmtI | GCTAGC | 1 cut(s) | 1709 |
| BmuI | ACTGGG | 2 cut(s) | 1345, 2481 |
| BpiI | GAAGAC | 4 cut(s) | 1403, 3333, 3638, 4437 |
| BpmI | CTGGAG | 3 cut(s) | 1593, 3816, 4354 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3122 |
| BpuEI | CTTGAG | 5 cut(s) | 2393, 2873, 3554, 3830, 3929 |
| BpuMI | CCSGG | 1 cut(s) | 4539 |
| Bsa29I | ATCGAT | 1 cut(s) | 4306 |
| BsaAI | YACGTR | 3 cut(s) | 1109, 2693, 3191 |
| BsaBI | GATNNNNATC | 1 cut(s) | 991 |
| BsaI | GGTCTC | 1 cut(s) | 4122 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1485, 1515, 2397, 2427 |
| Bse118I | RCCGGY | 2 cut(s) | 490, 1043 |
| Bse1I | ACTGG | 9 cut(s) | 936, 1340, 1380, 1499, 1622, 2476, 2600, 3703, 4371 |
| Bse21I | CCTNAGG | 1 cut(s) | 4094 |
| Bse3DI | GCAATG | 5 cut(s) | 1233, 3249, 3770, 4124, 4265 |
| Bse8I | GATNNNNATC | 1 cut(s) | 991 |
| BseBI | CCWGG | 5 cut(s) | 855, 915, 1368, 1524, 4063 |
| BseCI | ATCGAT | 1 cut(s) | 4306 |
| BseJI | GATNNNNATC | 1 cut(s) | 991 |
| BseMI | GCAATG | 5 cut(s) | 1233, 3249, 3770, 4124, 4265 |
| BseNI | ACTGG | 9 cut(s) | 936, 1340, 1380, 1499, 1622, 2476, 2600, 3703, 4371 |
| BseRI | GAGGAG | 5 cut(s) | 401, 743, 822, 1703, 3795 |
| BseSI | GKGCMC | 1 cut(s) | 2460 |
| BseXI | GCAGC | 8 cut(s) | 261, 2686, 3226, 3747, 3823, 4141, 4141, 4352 |
| BsgI | GTGCAG | 4 cut(s) | 75, 1608, 3127, 3918 |
| BshNI | GGYRCC | 3 cut(s) | 1865, 2455, 3600 |
| BshVI | ATCGAT | 1 cut(s) | 4306 |
| BsiHKAI | GWGCWC | 3 cut(s) | 515, 2751, 3404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 158 |
| BsiSI | CCGG | 3 cut(s) | 491, 1044, 4538 |
| BslFI | GGGAC | 2 cut(s) | 1349, 4305 |
| BsmFI | GGGAC | 2 cut(s) | 1349, 4305 |
| BsmI | GAATGC | 3 cut(s) | 881, 1963, 1988 |
| Bso31I | GGTCTC | 1 cut(s) | 4122 |
| BsoBI | CYCGRG | 1 cut(s) | 158 |
| Bsp1286I | GDGCHC | 7 cut(s) | 130, 515, 1172, 2460, 2751, 3404, 3900 |
| Bsp19I | CCATGG | 2 cut(s) | 1172, 1558 |
| BspACI | CCGC | 6 cut(s) | 348, 361, 1613, 2302, 2453, 4275 |
| BspDI | ATCGAT | 1 cut(s) | 4306 |
| BspHI | TCATGA | 1 cut(s) | 1684 |
| BspMAI | CTGCAG | 2 cut(s) | 279, 3841 |
| BspMI | ACCTGC | 2 cut(s) | 268, 835 |
| BspOI | GCTAGC | 1 cut(s) | 1709 |
| BspPI | GGATC | 8 cut(s) | 79, 994, 1213, 1831, 2793, 3006, 3626, 4392 |
| BspQI | GCTCTTC | 1 cut(s) | 194 |
| BspT107I | GGYRCC | 3 cut(s) | 1865, 2455, 3600 |
| BspTI | CTTAAG | 1 cut(s) | 3740 |
| BspTNI | GGTCTC | 1 cut(s) | 4122 |
| BsrDI | GCAATG | 5 cut(s) | 1233, 3249, 3770, 4124, 4265 |
| BsrFI | RCCGGY | 2 cut(s) | 490, 1043 |
| BsrI | ACTGG | 9 cut(s) | 936, 1340, 1380, 1499, 1622, 2476, 2600, 3703, 4371 |
| BssAI | RCCGGY | 2 cut(s) | 490, 1043 |
| BssSI | CACGAG | 1 cut(s) | 2465 |
| BssT1I | CCWWGG | 6 cut(s) | 17, 379, 1172, 1253, 1558, 3687 |
| Bst2BI | CACGAG | 1 cut(s) | 2465 |
| Bst2UI | CCWGG | 5 cut(s) | 855, 915, 1368, 1524, 4063 |
| Bst6I | CTCTTC | 5 cut(s) | 194, 359, 623, 1866, 2964 |
| BstAFI | CTTAAG | 1 cut(s) | 3740 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1893, 4419 |
| BstBAI | YACGTR | 3 cut(s) | 1109, 2693, 3191 |
| BstDSI | CCRYGG | 2 cut(s) | 1172, 1558 |
| BstH2I | RGCGCY | 1 cut(s) | 3122 |
| BstHHI | GCGC | 5 cut(s) | 285, 1404, 2199, 3121, 4317 |
| BstNI | CCWGG | 5 cut(s) | 855, 915, 1368, 1524, 4063 |
| BstNSI | RCATGY | 6 cut(s) | 524, 1887, 3338, 3917, 3961, 4469 |
| BstSCI | CCNGG | 6 cut(s) | 853, 913, 1366, 1522, 4061, 4537 |
| BstSFI | CTRYAG | 5 cut(s) | 275, 1162, 1514, 1771, 3837 |
| BstSLI | GKGCMC | 1 cut(s) | 2460 |
| BstSNI | TACGTA | 1 cut(s) | 3191 |
| BstV1I | GCAGC | 8 cut(s) | 261, 2686, 3226, 3747, 3823, 4141, 4141, 4352 |
| BstV2I | GAAGAC | 4 cut(s) | 1403, 3333, 3638, 4437 |
| BstX2I | RGATCY | 3 cut(s) | 986, 1550, 2785 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 861, 1353, 1617 |
| BstYI | RGATCY | 3 cut(s) | 986, 1550, 2785 |
| Bsu15I | ATCGAT | 1 cut(s) | 4306 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4094 |
| BsuI | GTATCC | 1 cut(s) | 1072 |
| BsuTUI | ATCGAT | 1 cut(s) | 4306 |
| BtgI | CCRYGG | 2 cut(s) | 1172, 1558 |
| BtsI | GCAGTG | 1 cut(s) | 1075 |
| BveI | ACCTGC | 2 cut(s) | 268, 835 |
| CaiI | CAGNNNCTG | 3 cut(s) | 989, 1595, 2589 |
| CciI | TCATGA | 1 cut(s) | 1684 |
| CfoI | GCGC | 5 cut(s) | 285, 1404, 2199, 3121, 4317 |
| Cfr10I | RCCGGY | 2 cut(s) | 490, 1043 |
| Cfr13I | GGNCC | 6 cut(s) | 156, 340, 594, 1876, 2155, 2840 |
| ClaI | ATCGAT | 1 cut(s) | 4306 |
| CseI | GACGC | 4 cut(s) | 265, 279, 1351, 4536 |
| Csp6I | GTAC | 7 cut(s) | 322, 1357, 1866, 2694, 2929, 3855, 3980 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4320, 4355 |
| CviQI | GTAC | 7 cut(s) | 322, 1357, 1866, 2694, 2929, 3855, 3980 |
| EaeI | YGGCCR | 1 cut(s) | 4560 |
| Eam1104I | CTCTTC | 5 cut(s) | 194, 359, 623, 1866, 2964 |
| EarI | CTCTTC | 5 cut(s) | 194, 359, 623, 1866, 2964 |
| Ecl136II | GAGCTC | 2 cut(s) | 2749, 3402 |
| Eco105I | TACGTA | 1 cut(s) | 3191 |
| Eco130I | CCWWGG | 6 cut(s) | 17, 379, 1172, 1253, 1558, 3687 |
| Eco24I | GRGCYC | 5 cut(s) | 130, 1172, 2751, 3404, 3900 |
| Eco31I | GGTCTC | 1 cut(s) | 4122 |
| Eco32I | GATATC | 1 cut(s) | 3294 |
| Eco47I | GGWCC | 3 cut(s) | 340, 1876, 2840 |
| Eco53kI | GAGCTC | 2 cut(s) | 2749, 3402 |
| Eco57I | CTGAAG | 5 cut(s) | 2364, 2933, 3246, 3993, 4212 |
| Eco72I | CACGTG | 1 cut(s) | 1109 |
| Eco81I | CCTNAGG | 1 cut(s) | 4094 |
| Eco88I | CYCGRG | 1 cut(s) | 158 |
| EcoICRI | GAGCTC | 2 cut(s) | 2749, 3402 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1876, 2840 |
| EcoRI | GAATTC | 1 cut(s) | 883 |
| EcoRII | CCWGG | 5 cut(s) | 853, 913, 1366, 1522, 4061 |
| EcoRV | GATATC | 1 cut(s) | 3294 |
| EcoT14I | CCWWGG | 6 cut(s) | 17, 379, 1172, 1253, 1558, 3687 |
| EcoT22I | ATGCAT | 1 cut(s) | 1889 |
| EcoT38I | GRGCYC | 5 cut(s) | 130, 1172, 2751, 3404, 3900 |
| ErhI | CCWWGG | 6 cut(s) | 17, 379, 1172, 1253, 1558, 3687 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 768, 800, 4380, 4412 |
| FaqI | GGGAC | 2 cut(s) | 1349, 4305 |
| FauI | CCCGC | 2 cut(s) | 341, 2295 |
| FauNDI | CATATG | 1 cut(s) | 3859 |
| FbaI | TGATCA | 3 cut(s) | 736, 2322, 3064 |
| FblI | GTMKAC | 1 cut(s) | 3465 |
| Fnu4HI | GCNGC | 8 cut(s) | 275, 2700, 3240, 3761, 3837, 4130, 4155, 4366 |
| FriOI | GRGCYC | 5 cut(s) | 130, 1172, 2751, 3404, 3900 |
| Fsp4HI | GCNGC | 8 cut(s) | 275, 2700, 3240, 3761, 3837, 4130, 4155, 4366 |
| FspAI | RTGCGCAY | 1 cut(s) | 4316 |
| FspBI | CTAG | 7 cut(s) | 18, 1706, 1958, 3867, 3983, 4301, 4439 |
| FspI | TGCGCA | 2 cut(s) | 1403, 4316 |
| GlaI | GCGC | 5 cut(s) | 284, 1403, 2198, 3120, 4316 |
| GluI | GCNGC | 8 cut(s) | 275, 2700, 3240, 3761, 3837, 4130, 4155, 4366 |
| GsuI | CTGGAG | 3 cut(s) | 1593, 3816, 4354 |
| HaeII | RGCGCY | 1 cut(s) | 3122 |
| HapII | CCGG | 3 cut(s) | 491, 1044, 4538 |
| HgaI | GACGC | 4 cut(s) | 265, 279, 1351, 4536 |
| HhaI | GCGC | 5 cut(s) | 285, 1404, 2199, 3121, 4317 |
| Hin6I | GCGC | 5 cut(s) | 283, 1402, 2197, 3119, 4315 |
| HinP1I | GCGC | 5 cut(s) | 283, 1402, 2197, 3119, 4315 |
| HincII | GTYRAC | 5 cut(s) | 533, 1740, 2899, 3466, 4031 |
| HindII | GTYRAC | 5 cut(s) | 533, 1740, 2899, 3466, 4031 |
| HindIII | AAGCTT | 1 cut(s) | 2915 |
| HpaI | GTTAAC | 1 cut(s) | 2899 |
| HpaII | CCGG | 3 cut(s) | 491, 1044, 4538 |
| Hpy99I | CGWCG | 1 cut(s) | 295 |
| HpyCH4IV | ACGT | 3 cut(s) | 1108, 2692, 3190 |
| HpySE526I | ACGT | 3 cut(s) | 1108, 2692, 3190 |
| HspAI | GCGC | 5 cut(s) | 283, 1402, 2197, 3119, 4315 |
| KpnI | GGTACC | 1 cut(s) | 1869 |
| Ksp22I | TGATCA | 3 cut(s) | 736, 2322, 3064 |
| KspAI | GTTAAC | 1 cut(s) | 2899 |
| LguI | GCTCTTC | 1 cut(s) | 194 |
| Lsp1109I | GCAGC | 8 cut(s) | 261, 2686, 3226, 3747, 3823, 4141, 4141, 4352 |
| MaeI | CTAG | 7 cut(s) | 18, 1706, 1958, 3867, 3983, 4301, 4439 |
| MaeII | ACGT | 3 cut(s) | 1108, 2692, 3190 |
| MaeIII | GTNAC | 7 cut(s) | 542, 1070, 1456, 1718, 1724, 2462, 3186 |
| MfeI | CAATTG | 1 cut(s) | 2703 |
| MflI | RGATCY | 3 cut(s) | 986, 1550, 2785 |
| MhlI | GDGCHC | 7 cut(s) | 130, 515, 1172, 2460, 2751, 3404, 3900 |
| MlsI | TGGCCA | 1 cut(s) | 4562 |
| MluNI | TGGCCA | 1 cut(s) | 4562 |
| MlyI | GAGTC | 2 cut(s) | 3500, 4291 |
| MmeI | TCCRAC | 5 cut(s) | 297, 372, 912, 2547, 4193 |
| Mox20I | TGGCCA | 1 cut(s) | 4562 |
| Mph1103I | ATGCAT | 1 cut(s) | 1889 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2268, 3209, 4513 |
| MscI | TGGCCA | 1 cut(s) | 4562 |
| MslI | CAYNNNNRTG | 5 cut(s) | 552, 1951, 1977, 2937, 3335 |
| Msp20I | TGGCCA | 1 cut(s) | 4562 |
| MspA1I | CMGCKG | 2 cut(s) | 274, 1613 |
| MspCI | CTTAAG | 1 cut(s) | 3740 |
| MspI | CCGG | 3 cut(s) | 491, 1044, 4538 |
| MspR9I | CCNGG | 6 cut(s) | 855, 915, 1368, 1524, 4063, 4539 |
| MunI | CAATTG | 1 cut(s) | 2703 |
| Mva1269I | GAATGC | 3 cut(s) | 881, 1963, 1988 |
| MvaI | CCWGG | 5 cut(s) | 855, 915, 1368, 1524, 4063 |
| NciI | CCSGG | 1 cut(s) | 4539 |
| NcoI | CCATGG | 2 cut(s) | 1172, 1558 |
| NdeI | CATATG | 1 cut(s) | 3859 |
| NheI | GCTAGC | 1 cut(s) | 1705 |
| NmeAIII | GCCGAG | 1 cut(s) | 190 |
| NmuCI | GTSAC | 6 cut(s) | 542, 1070, 1456, 1718, 1724, 2462 |
| NsbI | TGCGCA | 2 cut(s) | 1403, 4316 |
| NsiI | ATGCAT | 1 cut(s) | 1889 |
| NspI | RCATGY | 6 cut(s) | 524, 1887, 3338, 3917, 3961, 4469 |
| OliI | CACNNNNGTG | 1 cut(s) | 1977 |
| PaeI | GCATGC | 1 cut(s) | 3917 |
| PagI | TCATGA | 1 cut(s) | 1684 |
| PaqCI | CACCTGC | 1 cut(s) | 268 |
| PciI | ACATGT | 2 cut(s) | 3334, 3957 |
| PciSI | GCTCTTC | 1 cut(s) | 194 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 512 |
| PctI | GAATGC | 3 cut(s) | 881, 1963, 1988 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2268, 3209, 4513 |
| PflFI | GACNNNGTC | 2 cut(s) | 2001, 2380 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1149 |
| PfoI | TCCNGGA | 1 cut(s) | 4537 |
| PkrI | GCNGC | 8 cut(s) | 276, 2701, 3241, 3762, 3838, 4131, 4156, 4367 |
| PleI | GAGTC | 2 cut(s) | 3499, 4291 |
| PmaCI | CACGTG | 1 cut(s) | 1109 |
| PmlI | CACGTG | 1 cut(s) | 1109 |
| PpsI | GAGTC | 2 cut(s) | 3499, 4291 |
| Ppu21I | YACGTR | 3 cut(s) | 1109, 2693, 3191 |
| PpuMI | RGGWCCY | 2 cut(s) | 1876, 2840 |
| PscI | ACATGT | 2 cut(s) | 3334, 3957 |
| PsiI | TTATAA | 2 cut(s) | 147, 573 |
| Psp124BI | GAGCTC | 2 cut(s) | 2751, 3404 |
| Psp5II | RGGWCCY | 2 cut(s) | 1876, 2840 |
| Psp6I | CCWGG | 5 cut(s) | 853, 913, 1366, 1522, 4061 |
| PspCI | CACGTG | 1 cut(s) | 1109 |
| PspGI | CCWGG | 5 cut(s) | 853, 913, 1366, 1522, 4061 |
| PspPI | GGNCC | 6 cut(s) | 156, 340, 594, 1876, 2155, 2840 |
| PspPPI | RGGWCCY | 2 cut(s) | 1876, 2840 |
| PstI | CTGCAG | 2 cut(s) | 279, 3841 |
| PstNI | CAGNNNCTG | 3 cut(s) | 989, 1595, 2589 |
| PsuI | RGATCY | 3 cut(s) | 986, 1550, 2785 |
| PsyI | GACNNNGTC | 2 cut(s) | 2001, 2380 |
| PvuII | CAGCTG | 1 cut(s) | 274 |
| RsaI | GTAC | 7 cut(s) | 323, 1358, 1867, 2695, 2930, 3856, 3981 |
| RsaNI | GTAC | 7 cut(s) | 322, 1357, 1866, 2694, 2929, 3855, 3980 |
| RseI | CAYNNNNRTG | 5 cut(s) | 552, 1951, 1977, 2937, 3335 |
| SacI | GAGCTC | 2 cut(s) | 2751, 3404 |
| SalI | GTCGAC | 1 cut(s) | 3464 |
| SapI | GCTCTTC | 1 cut(s) | 194 |
| SatI | GCNGC | 8 cut(s) | 275, 2700, 3240, 3761, 3837, 4130, 4155, 4366 |
| Sau96I | GGNCC | 6 cut(s) | 156, 340, 594, 1876, 2155, 2840 |
| ScaI | AGTACT | 1 cut(s) | 3981 |
| SchI | GAGTC | 2 cut(s) | 3500, 4291 |
| ScrFI | CCNGG | 6 cut(s) | 855, 915, 1368, 1524, 4063, 4539 |
| SduI | GDGCHC | 7 cut(s) | 130, 515, 1172, 2460, 2751, 3404, 3900 |
| SfcI | CTRYAG | 5 cut(s) | 275, 1162, 1514, 1771, 3837 |
| SinI | GGWCC | 3 cut(s) | 340, 1876, 2840 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 552, 1951, 1977, 2937, 3335 |
| SmlI | CTYRAG | 6 cut(s) | 2372, 2852, 3533, 3740, 3809, 3908 |
| SmoI | CTYRAG | 6 cut(s) | 2372, 2852, 3533, 3740, 3809, 3908 |
| SnaBI | TACGTA | 1 cut(s) | 3191 |
| SphI | GCATGC | 1 cut(s) | 3917 |
| SsiI | CCGC | 6 cut(s) | 348, 361, 1613, 2302, 2453, 4275 |
| SspI | AATATT | 1 cut(s) | 82 |
| SspMI | CTAG | 7 cut(s) | 18, 1706, 1958, 3867, 3983, 4301, 4439 |
| SstI | GAGCTC | 2 cut(s) | 2751, 3404 |
| StyD4I | CCNGG | 6 cut(s) | 853, 913, 1366, 1522, 4061, 4537 |
| StyI | CCWWGG | 6 cut(s) | 17, 379, 1172, 1253, 1558, 3687 |
| TaiI | ACGT | 3 cut(s) | 1111, 2695, 3193 |
| TaqI | TCGA | 4 cut(s) | 515, 2818, 3465, 4306 |
| TatI | WGTACW | 2 cut(s) | 321, 3979 |
| TseFI | GTSAC | 6 cut(s) | 542, 1070, 1456, 1718, 1724, 2462 |
| TseI | GCWGC | 8 cut(s) | 274, 2699, 3239, 3760, 3836, 4129, 4154, 4365 |
| Tsp45I | GTSAC | 6 cut(s) | 542, 1070, 1456, 1718, 1724, 2462 |
| TspGWI | ACGGA | 1 cut(s) | 2211 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2001, 2380 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1149 |
| Vha464I | CTTAAG | 1 cut(s) | 3740 |
| VpaK11BI | GGWCC | 3 cut(s) | 340, 1876, 2840 |
| XbaI | TCTAGA | 2 cut(s) | 1957, 4300 |
| XceI | RCATGY | 6 cut(s) | 524, 1887, 3338, 3917, 3961, 4469 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 201, 858, 4378 |
| XmaJI | CCTAGG | 1 cut(s) | 17 |
| XmiI | GTMKAC | 1 cut(s) | 3465 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2268, 3209, 4513 |
| XspI | CTAG | 7 cut(s) | 18, 1706, 1958, 3867, 3983, 4301, 4439 |
| ZrmI | AGTACT | 1 cut(s) | 3981 |
| Zsp2I | ATGCAT | 1 cut(s) | 1889 |