lysine-specific demethylase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63490 AT1G63490 AT1G63490 AT1G63490 |
| fragaria_vesca | FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 |
| malus_domestica | MD06G1081900.v1.1 MD14G1103700.v1.1 |
| prunus_persica | Prupe.5G099000_v2.0.a1 Prupe.5G099000_v2.0.a1 Prupe.5G099000_v2.0.a1 Prupe.5G099000_v2.0.a1 |
| pyrus_communis | pycom06g07880 pycom14g09970 |
| rosa_chinensis | RchiOBHm_Chr7g0197841 |
| rosa_laevigata | RLG00000003906 |
| rosa_multiflora | Rmu_co8257227.1_g000001 Rmu_co8363405.1_g000001 Rmu_sc0034285.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00258150 |
| rosa_rugosa | Rorug07G0043800 Rorug07G0043900 |
| rosa_samantha | Rh7AG167800 Rh7BG170700 Rh7CG177100 Rh7DG169600 |
| rosa_wichuraiana | Rw7G014620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 573 |
| Acc16I | TGCGCA | 1 cut(s) | 1431 |
| Acc36I | ACCTGC | 2 cut(s) | 268, 3448 |
| Acc65I | GGTACC | 2 cut(s) | 1862, 3436 |
| AccB1I | GGYRCC | 4 cut(s) | 1249, 1862, 2452, 3436 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 204, 1149 |
| AccBSI | CCGCTC | 1 cut(s) | 1098 |
| AcoI | YGGCCR | 1 cut(s) | 5499 |
| AcuI | CTGAAG | 5 cut(s) | 2361, 2930, 3993, 4212, 5289 |
| AcvI | CACGTG | 1 cut(s) | 1109 |
| AdeI | CACNNNGTG | 1 cut(s) | 5361 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 204, 669, 1149, 1631, 2305, 3249, 3396, 4498, 4807 |
| AflII | CTTAAG | 4 cut(s) | 2849, 3740, 3908, 5093 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2527 |
| AjiI | CACGTC | 1 cut(s) | 5510 |
| AjnI | CCWGG | 8 cut(s) | 853, 913, 1366, 1522, 1784, 2467, 3389, 4927 |
| AleI | CACNNNNGTG | 2 cut(s) | 1974, 3877 |
| Alw21I | GWGCWC | 8 cut(s) | 2413, 2748, 3404, 3802, 3874, 3884, 4279, 5260 |
| Alw44I | GTGCAC | 1 cut(s) | 3870 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 68, 164, 989, 1595, 2586, 5015 |
| Ama87I | CYCGRG | 1 cut(s) | 5253 |
| ApaLI | GTGCAC | 1 cut(s) | 3870 |
| ApeKI | GCWGC | 9 cut(s) | 2696, 3179, 3239, 3600, 3760, 4365, 4891, 4910, 5006 |
| AseI | ATTAAT | 1 cut(s) | 2427 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 502, 2265, 3209, 3978, 4513 |
| Asp718I | GGTACC | 2 cut(s) | 1862, 3436 |
| AspA2I | CCTAGG | 1 cut(s) | 17 |
| AspLEI | GCGC | 4 cut(s) | 1432, 1797, 2196, 3121 |
| AspS9I | GGNCC | 6 cut(s) | 44, 340, 847, 2152, 2216, 3286 |
| AsuC2I | CCSGG | 2 cut(s) | 2300, 4101 |
| AsuII | TTCGAA | 1 cut(s) | 515 |
| AvaI | CYCGRG | 1 cut(s) | 5253 |
| AvaII | GGWCC | 4 cut(s) | 44, 340, 847, 2216 |
| AvrII | CCTAGG | 1 cut(s) | 17 |
| BaeGI | GKGCMC | 2 cut(s) | 2457, 3874 |
| BamHI | GGATCC | 1 cut(s) | 1873 |
| BanI | GGYRCC | 4 cut(s) | 1249, 1862, 2452, 3436 |
| BanII | GRGCYC | 4 cut(s) | 2413, 2748, 3404, 5023 |
| BauI | CACGAG | 1 cut(s) | 1685 |
| BbrPI | CACGTG | 1 cut(s) | 1109 |
| BbsI | GAAGAC | 5 cut(s) | 19, 1403, 1994, 1999, 3333 |
| Bbv12I | GWGCWC | 8 cut(s) | 2413, 2748, 3404, 3802, 3874, 3884, 4279, 5260 |
| BbvCI | CCTCAGC | 1 cut(s) | 3122 |
| BbvI | GCAGC | 9 cut(s) | 2683, 3191, 3226, 3587, 3747, 4352, 4897, 4903, 4993 |
| BccI | CCATC | 9 cut(s) | 1480, 1945, 2650, 2876, 3032, 3623, 3635, 3815, 3887 |
| BceAI | ACGGC | 3 cut(s) | 299, 787, 5125 |
| BciT130I | CCWGG | 8 cut(s) | 855, 915, 1368, 1524, 1786, 2469, 3391, 4929 |
| BciVI | GTATCC | 2 cut(s) | 3361, 3520 |
| BclI | TGATCA | 6 cut(s) | 736, 1117, 3064, 4182, 4780, 5146 |
| BcnI | CCSGG | 2 cut(s) | 2300, 4101 |
| BfaI | CTAG | 8 cut(s) | 18, 1839, 3668, 4175, 4280, 4301, 4439, 5448 |
| BfmI | CTRYAG | 3 cut(s) | 4939, 5007, 5280 |
| BfoI | RGCGCY | 2 cut(s) | 1798, 3122 |
| BfrI | CTTAAG | 4 cut(s) | 2849, 3740, 3908, 5093 |
| BfuAI | ACCTGC | 2 cut(s) | 268, 3448 |
| BfuI | GTATCC | 2 cut(s) | 3361, 3520 |
| BglII | AGATCT | 4 cut(s) | 1550, 2782, 4307, 4714 |
| BlnI | CCTAGG | 1 cut(s) | 17 |
| BmcAI | AGTACT | 1 cut(s) | 3231 |
| Bme18I | GGWCC | 4 cut(s) | 44, 340, 847, 2216 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2527 |
| BmeT110I | CYCGRG | 1 cut(s) | 5253 |
| BmgBI | CACGTC | 1 cut(s) | 5510 |
| BmgT120I | GGNCC | 6 cut(s) | 44, 340, 847, 2152, 2216, 3286 |
| BmrI | ACTGGG | 2 cut(s) | 1345, 5039 |
| BmuI | ACTGGG | 2 cut(s) | 1345, 5039 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1129 |
| BpiI | GAAGAC | 5 cut(s) | 19, 1403, 1994, 1999, 3333 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4282, 4314 |
| BpmI | CTGGAG | 7 cut(s) | 1807, 1976, 2563, 3850, 4354, 4874, 4950 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3122 |
| Bpu14I | TTCGAA | 1 cut(s) | 515 |
| BpuEI | CTTGAG | 2 cut(s) | 3554, 4088 |
| BpuMI | CCSGG | 2 cut(s) | 2300, 4101 |
| Bsa29I | ATCGAT | 1 cut(s) | 958 |
| BsaAI | YACGTR | 1 cut(s) | 1109 |
| BsaBI | GATNNNNATC | 2 cut(s) | 991, 4713 |
| BsaI | GGTCTC | 4 cut(s) | 120, 537, 1117, 5281 |
| BsaJI | CCNNGG | 9 cut(s) | 17, 854, 1172, 1253, 1366, 1558, 3687, 4100, 4426 |
| BsaWI | WCCGGW | 1 cut(s) | 4586 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 204, 669, 1149, 1631, 2305, 3249, 3396, 4498, 4807 |
| Bse3DI | GCAATG | 5 cut(s) | 1233, 2055, 3254, 3770, 4265 |
| Bse8I | GATNNNNATC | 2 cut(s) | 991, 4713 |
| BseBI | CCWGG | 8 cut(s) | 855, 915, 1368, 1524, 1786, 2469, 3391, 4929 |
| BseCI | ATCGAT | 1 cut(s) | 958 |
| BseDI | CCNNGG | 9 cut(s) | 17, 854, 1172, 1253, 1366, 1558, 3687, 4100, 4426 |
| BseJI | GATNNNNATC | 2 cut(s) | 991, 4713 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 204, 669, 1149, 1631, 2305, 3249, 3396, 4498, 4807 |
| BseMI | GCAATG | 5 cut(s) | 1233, 2055, 3254, 3770, 4265 |
| BseRI | GAGGAG | 7 cut(s) | 401, 638, 646, 743, 1703, 2084, 3412 |
| BseSI | GKGCMC | 2 cut(s) | 2457, 3874 |
| BseXI | GCAGC | 9 cut(s) | 2683, 3191, 3226, 3587, 3747, 4352, 4897, 4903, 4993 |
| BseYI | CCCAGC | 1 cut(s) | 5426 |
| BsgI | GTGCAG | 5 cut(s) | 75, 1608, 3127, 3775, 5383 |
| Bsh1285I | CGRYCG | 1 cut(s) | 962 |
| BshNI | GGYRCC | 4 cut(s) | 1249, 1862, 2452, 3436 |
| BshVI | ATCGAT | 1 cut(s) | 958 |
| BsiEI | CGRYCG | 1 cut(s) | 962 |
| BsiHKAI | GWGCWC | 8 cut(s) | 2413, 2748, 3404, 3802, 3874, 3884, 4279, 5260 |
| BsiHKCI | CYCGRG | 1 cut(s) | 5253 |
| BsiSI | CCGG | 3 cut(s) | 2299, 4100, 4587 |
| BslFI | GGGAC | 2 cut(s) | 833, 1349 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 204, 669, 1149, 1631, 2305, 3249, 3396, 4498, 4807 |
| BsmBI | CGTCTC | 1 cut(s) | 2388 |
| BsmFI | GGGAC | 2 cut(s) | 833, 1349 |
| BsmI | GAATGC | 1 cut(s) | 1985 |
| Bso31I | GGTCTC | 4 cut(s) | 120, 537, 1117, 5281 |
| BsoBI | CYCGRG | 1 cut(s) | 5253 |
| Bsp119I | TTCGAA | 1 cut(s) | 515 |
| Bsp1407I | TGTACA | 1 cut(s) | 4774 |
| Bsp19I | CCATGG | 4 cut(s) | 1172, 1558, 3687, 4426 |
| BspDI | ATCGAT | 1 cut(s) | 958 |
| BspHI | TCATGA | 3 cut(s) | 4641, 4783, 5299 |
| BspMAI | CTGCAG | 1 cut(s) | 5011 |
| BspMI | ACCTGC | 2 cut(s) | 268, 3448 |
| BspT104I | TTCGAA | 1 cut(s) | 515 |
| BspT107I | GGYRCC | 4 cut(s) | 1249, 1862, 2452, 3436 |
| BspTI | CTTAAG | 4 cut(s) | 2849, 3740, 3908, 5093 |
| BspTNI | GGTCTC | 4 cut(s) | 120, 537, 1117, 5281 |
| BsrBI | CCGCTC | 1 cut(s) | 1098 |
| BsrDI | GCAATG | 5 cut(s) | 1233, 2055, 3254, 3770, 4265 |
| BsrGI | TGTACA | 1 cut(s) | 4774 |
| BssECI | CCNNGG | 9 cut(s) | 17, 854, 1172, 1253, 1366, 1558, 3687, 4100, 4426 |
| BssSI | CACGAG | 1 cut(s) | 1685 |
| BssT1I | CCWWGG | 6 cut(s) | 17, 1172, 1253, 1558, 3687, 4426 |
| Bst2BI | CACGAG | 1 cut(s) | 1685 |
| Bst2UI | CCWGG | 8 cut(s) | 855, 915, 1368, 1524, 1786, 2469, 3391, 4929 |
| Bst6I | CTCTTC | 3 cut(s) | 623, 959, 1863 |
| BstAFI | CTTAAG | 4 cut(s) | 2849, 3740, 3908, 5093 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1890, 4419, 4466, 4991 |
| BstAUI | TGTACA | 1 cut(s) | 4774 |
| BstBAI | YACGTR | 1 cut(s) | 1109 |
| BstBI | TTCGAA | 1 cut(s) | 515 |
| BstDSI | CCRYGG | 4 cut(s) | 1172, 1558, 3687, 4426 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3394 |
| BstH2I | RGCGCY | 2 cut(s) | 1798, 3122 |
| BstHHI | GCGC | 4 cut(s) | 1432, 1797, 2196, 3121 |
| BstMCI | CGRYCG | 1 cut(s) | 962 |
| BstNI | CCWGG | 8 cut(s) | 855, 915, 1368, 1524, 1786, 2469, 3391, 4929 |
| BstNSI | RCATGY | 7 cut(s) | 524, 1884, 3917, 4469, 4662, 5169, 5247 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1129 |
| BstSFI | CTRYAG | 3 cut(s) | 4939, 5007, 5280 |
| BstSLI | GKGCMC | 2 cut(s) | 2457, 3874 |
| BstV1I | GCAGC | 9 cut(s) | 2683, 3191, 3226, 3587, 3747, 4352, 4897, 4903, 4993 |
| BstV2I | GAAGAC | 5 cut(s) | 19, 1403, 1994, 1999, 3333 |
| BstX2I | RGATCY | 7 cut(s) | 986, 1550, 1873, 2782, 4307, 4714, 5422 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1353, 4765 |
| BstYI | RGATCY | 7 cut(s) | 986, 1550, 1873, 2782, 4307, 4714, 5422 |
| Bsu15I | ATCGAT | 1 cut(s) | 958 |
| BsuI | GTATCC | 2 cut(s) | 3361, 3520 |
| BsuTUI | ATCGAT | 1 cut(s) | 958 |
| BtgI | CCRYGG | 4 cut(s) | 1172, 1558, 3687, 4426 |
| BtgZI | GCGATG | 2 cut(s) | 2830, 5171 |
| BtrI | CACGTC | 1 cut(s) | 5510 |
| BtsI | GCAGTG | 3 cut(s) | 1075, 3189, 4985 |
| BveI | ACCTGC | 2 cut(s) | 268, 3448 |
| CaiI | CAGNNNCTG | 6 cut(s) | 68, 164, 989, 1595, 2586, 5015 |
| CciI | TCATGA | 3 cut(s) | 4641, 4783, 5299 |
| CfoI | GCGC | 4 cut(s) | 1432, 1797, 2196, 3121 |
| Cfr13I | GGNCC | 6 cut(s) | 44, 340, 847, 2152, 2216, 3286 |
| ClaI | ATCGAT | 1 cut(s) | 958 |
| CseI | GACGC | 2 cut(s) | 1351, 4541 |
| DraI | TTTAAA | 2 cut(s) | 4752, 4899 |
| DraIII | CACNNNGTG | 1 cut(s) | 5361 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2527 |
| EaeI | YGGCCR | 1 cut(s) | 5499 |
| Eam1104I | CTCTTC | 3 cut(s) | 623, 959, 1863 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2527 |
| EarI | CTCTTC | 3 cut(s) | 623, 959, 1863 |
| Ecl136II | GAGCTC | 3 cut(s) | 2411, 2746, 3402 |
| Eco130I | CCWWGG | 6 cut(s) | 17, 1172, 1253, 1558, 3687, 4426 |
| Eco24I | GRGCYC | 4 cut(s) | 2413, 2748, 3404, 5023 |
| Eco31I | GGTCTC | 4 cut(s) | 120, 537, 1117, 5281 |
| Eco32I | GATATC | 2 cut(s) | 2556, 4496 |
| Eco47I | GGWCC | 4 cut(s) | 44, 340, 847, 2216 |
| Eco53kI | GAGCTC | 3 cut(s) | 2411, 2746, 3402 |
| Eco57I | CTGAAG | 5 cut(s) | 2361, 2930, 3993, 4212, 5289 |
| Eco72I | CACGTG | 1 cut(s) | 1109 |
| Eco88I | CYCGRG | 1 cut(s) | 5253 |
| EcoICRI | GAGCTC | 3 cut(s) | 2411, 2746, 3402 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3394 |
| EcoO109I | RGGNCCY | 1 cut(s) | 847 |
| EcoRI | GAATTC | 1 cut(s) | 883 |
| EcoRII | CCWGG | 8 cut(s) | 853, 913, 1366, 1522, 1784, 2467, 3389, 4927 |
| EcoRV | GATATC | 2 cut(s) | 2556, 4496 |
| EcoT14I | CCWWGG | 6 cut(s) | 17, 1172, 1253, 1558, 3687, 4426 |
| EcoT22I | ATGCAT | 2 cut(s) | 621, 1886 |
| EcoT38I | GRGCYC | 4 cut(s) | 2413, 2748, 3404, 5023 |
| ErhI | CCWWGG | 6 cut(s) | 17, 1172, 1253, 1558, 3687, 4426 |
| Esp3I | CGTCTC | 1 cut(s) | 2388 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 768, 800, 2074, 2106, 3966, 3998, 4732, 4764 |
| FaqI | GGGAC | 2 cut(s) | 833, 1349 |
| FauI | CCCGC | 2 cut(s) | 4676, 5145 |
| FauNDI | CATATG | 2 cut(s) | 3859, 5129 |
| FbaI | TGATCA | 6 cut(s) | 736, 1117, 3064, 4182, 4780, 5146 |
| FriOI | GRGCYC | 4 cut(s) | 2413, 2748, 3404, 5023 |
| FspBI | CTAG | 8 cut(s) | 18, 1839, 3668, 4175, 4280, 4301, 4439, 5448 |
| FspI | TGCGCA | 1 cut(s) | 1431 |
| GlaI | GCGC | 4 cut(s) | 1431, 1796, 2195, 3120 |
| GsaI | CCCAGC | 1 cut(s) | 5430 |
| GsuI | CTGGAG | 7 cut(s) | 1807, 1976, 2563, 3850, 4354, 4874, 4950 |
| HaeII | RGCGCY | 2 cut(s) | 1798, 3122 |
| HapII | CCGG | 3 cut(s) | 2299, 4100, 4587 |
| HgaI | GACGC | 2 cut(s) | 1351, 4541 |
| HhaI | GCGC | 4 cut(s) | 1432, 1797, 2196, 3121 |
| Hin6I | GCGC | 4 cut(s) | 1430, 1795, 2194, 3119 |
| HinP1I | GCGC | 4 cut(s) | 1430, 1795, 2194, 3119 |
| HincII | GTYRAC | 2 cut(s) | 2896, 3466 |
| HindII | GTYRAC | 2 cut(s) | 2896, 3466 |
| HindIII | AAGCTT | 2 cut(s) | 2774, 2912 |
| HpaI | GTTAAC | 1 cut(s) | 2896 |
| HpaII | CCGG | 3 cut(s) | 2299, 4100, 4587 |
| Hpy166II | GTNNAC | 9 cut(s) | 638, 1768, 2719, 2896, 3466, 3872, 4775, 4862, 5230 |
| Hpy8I | GTNNAC | 9 cut(s) | 638, 1768, 2719, 2896, 3466, 3872, 4775, 4862, 5230 |
| HpyCH4IV | ACGT | 5 cut(s) | 1108, 2689, 2856, 5212, 5509 |
| HpySE526I | ACGT | 5 cut(s) | 1108, 2689, 2856, 5212, 5509 |
| HspAI | GCGC | 4 cut(s) | 1430, 1795, 2194, 3119 |
| KpnI | GGTACC | 2 cut(s) | 1866, 3440 |
| Ksp22I | TGATCA | 6 cut(s) | 736, 1117, 3064, 4182, 4780, 5146 |
| KspAI | GTTAAC | 1 cut(s) | 2896 |
| Lsp1109I | GCAGC | 9 cut(s) | 2683, 3191, 3226, 3587, 3747, 4352, 4897, 4903, 4993 |
| MaeI | CTAG | 8 cut(s) | 18, 1839, 3668, 4175, 4280, 4301, 4439, 5448 |
| MaeII | ACGT | 5 cut(s) | 1108, 2689, 2856, 5212, 5509 |
| MbiI | CCGCTC | 1 cut(s) | 1098 |
| MfeI | CAATTG | 2 cut(s) | 533, 2700 |
| MflI | RGATCY | 7 cut(s) | 986, 1550, 1873, 2782, 4307, 4714, 5422 |
| MmeI | TCCRAC | 7 cut(s) | 297, 372, 2544, 2712, 4177, 4193, 4903 |
| Mph1103I | ATGCAT | 2 cut(s) | 621, 1886 |
| MroXI | GAANNNNTTC | 5 cut(s) | 502, 2265, 3209, 3978, 4513 |
| MslI | CAYNNNNRTG | 9 cut(s) | 552, 558, 1948, 1974, 2934, 3335, 3877, 4320, 4782 |
| MspA1I | CMGCKG | 1 cut(s) | 5152 |
| MspCI | CTTAAG | 4 cut(s) | 2849, 3740, 3908, 5093 |
| MspI | CCGG | 3 cut(s) | 2299, 4100, 4587 |
| MunI | CAATTG | 2 cut(s) | 533, 2700 |
| Mva1269I | GAATGC | 1 cut(s) | 1985 |
| MvaI | CCWGG | 8 cut(s) | 855, 915, 1368, 1524, 1786, 2469, 3391, 4929 |
| NciI | CCSGG | 2 cut(s) | 2300, 4101 |
| NcoI | CCATGG | 4 cut(s) | 1172, 1558, 3687, 4426 |
| NdeI | CATATG | 2 cut(s) | 3859, 5129 |
| NmeAIII | GCCGAG | 1 cut(s) | 5539 |
| NmuCI | GTSAC | 9 cut(s) | 791, 1070, 1456, 1715, 1721, 3418, 4116, 4848, 5168 |
| NsbI | TGCGCA | 1 cut(s) | 1431 |
| NsiI | ATGCAT | 2 cut(s) | 621, 1886 |
| NspI | RCATGY | 7 cut(s) | 524, 1884, 3917, 4469, 4662, 5169, 5247 |
| NspV | TTCGAA | 1 cut(s) | 515 |
| OliI | CACNNNNGTG | 2 cut(s) | 1974, 3877 |
| PaeI | GCATGC | 3 cut(s) | 3917, 4662, 5247 |
| PaeR7I | CTCGAG | 1 cut(s) | 5253 |
| PagI | TCATGA | 3 cut(s) | 4641, 4783, 5299 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 512 |
| PctI | GAATGC | 1 cut(s) | 1985 |
| PdmI | GAANNNNTTC | 5 cut(s) | 502, 2265, 3209, 3978, 4513 |
| PflFI | GACNNNGTC | 1 cut(s) | 1998 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 204, 1149 |
| PfoI | TCCNGGA | 1 cut(s) | 2298 |
| Ple19I | CGATCG | 1 cut(s) | 962 |
| PmaCI | CACGTG | 1 cut(s) | 1109 |
| PmlI | CACGTG | 1 cut(s) | 1109 |
| Ppu21I | YACGTR | 1 cut(s) | 1109 |
| PpuMI | RGGWCCY | 1 cut(s) | 847 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1129 |
| PshBI | ATTAAT | 1 cut(s) | 2427 |
| PsiI | TTATAA | 1 cut(s) | 573 |
| Psp124BI | GAGCTC | 3 cut(s) | 2413, 2748, 3404 |
| Psp5II | RGGWCCY | 1 cut(s) | 847 |
| Psp6I | CCWGG | 8 cut(s) | 853, 913, 1366, 1522, 1784, 2467, 3389, 4927 |
| PspCI | CACGTG | 1 cut(s) | 1109 |
| PspFI | CCCAGC | 1 cut(s) | 5426 |
| PspGI | CCWGG | 8 cut(s) | 853, 913, 1366, 1522, 1784, 2467, 3389, 4927 |
| PspPI | GGNCC | 6 cut(s) | 44, 340, 847, 2152, 2216, 3286 |
| PspPPI | RGGWCCY | 1 cut(s) | 847 |
| PspXI | VCTCGAGB | 1 cut(s) | 5253 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 314, 346 |
| PstI | CTGCAG | 1 cut(s) | 5011 |
| PstNI | CAGNNNCTG | 6 cut(s) | 68, 164, 989, 1595, 2586, 5015 |
| PsuI | RGATCY | 7 cut(s) | 986, 1550, 1873, 2782, 4307, 4714, 5422 |
| PsyI | GACNNNGTC | 1 cut(s) | 1998 |
| PvuI | CGATCG | 1 cut(s) | 962 |
| RseI | CAYNNNNRTG | 9 cut(s) | 552, 558, 1948, 1974, 2934, 3335, 3877, 4320, 4782 |
| SacI | GAGCTC | 3 cut(s) | 2413, 2748, 3404 |
| Sau96I | GGNCC | 6 cut(s) | 44, 340, 847, 2152, 2216, 3286 |
| ScaI | AGTACT | 1 cut(s) | 3231 |
| SfcI | CTRYAG | 3 cut(s) | 4939, 5007, 5280 |
| Sfr274I | CTCGAG | 1 cut(s) | 5253 |
| SfuI | TTCGAA | 1 cut(s) | 515 |
| SinI | GGWCC | 4 cut(s) | 44, 340, 847, 2216 |
| SlaI | CTCGAG | 1 cut(s) | 5253 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 552, 558, 1948, 1974, 2934, 3335, 3877, 4320, 4782 |
| SmlI | CTYRAG | 7 cut(s) | 2849, 3533, 3740, 3908, 4067, 5093, 5253 |
| SmoI | CTYRAG | 7 cut(s) | 2849, 3533, 3740, 3908, 4067, 5093, 5253 |
| SphI | GCATGC | 3 cut(s) | 3917, 4662, 5247 |
| SspI | AATATT | 1 cut(s) | 4921 |
| SspMI | CTAG | 8 cut(s) | 18, 1839, 3668, 4175, 4280, 4301, 4439, 5448 |
| SstI | GAGCTC | 3 cut(s) | 2413, 2748, 3404 |
| StyI | CCWWGG | 6 cut(s) | 17, 1172, 1253, 1558, 3687, 4426 |
| TaiI | ACGT | 5 cut(s) | 1111, 2692, 2859, 5215, 5512 |
| TatI | WGTACW | 6 cut(s) | 321, 523, 2574, 3229, 4774, 5309 |
| TauI | GCSGC | 2 cut(s) | 4333, 5501 |
| TseFI | GTSAC | 9 cut(s) | 791, 1070, 1456, 1715, 1721, 3418, 4116, 4848, 5168 |
| TseI | GCWGC | 9 cut(s) | 2696, 3179, 3239, 3600, 3760, 4365, 4891, 4910, 5006 |
| Tsp45I | GTSAC | 9 cut(s) | 791, 1070, 1456, 1715, 1721, 3418, 4116, 4848, 5168 |
| TspGWI | ACGGA | 1 cut(s) | 2208 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1998 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 204, 1149 |
| Vha464I | CTTAAG | 4 cut(s) | 2849, 3740, 3908, 5093 |
| VneI | GTGCAC | 1 cut(s) | 3870 |
| VpaK11BI | GGWCC | 4 cut(s) | 44, 340, 847, 2216 |
| VspI | ATTAAT | 1 cut(s) | 2427 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3394 |
| XbaI | TCTAGA | 2 cut(s) | 4279, 4300 |
| XceI | RCATGY | 7 cut(s) | 524, 1884, 3917, 4469, 4662, 5169, 5247 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 201, 858, 4378 |
| XhoI | CTCGAG | 1 cut(s) | 5253 |
| XmaJI | CCTAGG | 1 cut(s) | 17 |
| XmnI | GAANNNNTTC | 5 cut(s) | 502, 2265, 3209, 3978, 4513 |
| XspI | CTAG | 8 cut(s) | 18, 1839, 3668, 4175, 4280, 4301, 4439, 5448 |
| ZrmI | AGTACT | 1 cut(s) | 3231 |
| Zsp2I | ATGCAT | 2 cut(s) | 621, 1886 |