Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257227.1

Orthogroup ID

OG0004720

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 643

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257227.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ggtgctcatgttaattttgctcaacttgcggacaaatggcttttgcgctcatccaagattttccatagtcggttttccagagaagactatgttactatattgaaagaagctgaacaatttgtttgggctggttcagagatgaataatgttcgggaaatggcaaataatttgaaagaagctcggaaatgggcagagggtgtgagaaagtctgtatctaaaattgaaagttggtcatctcatcgcgacaaagatatagagaagattcacttggaatatatcaatgagttgctgagttttgatttgttgccctgtgatgagcctgggcatcttattttgaaggattatgctgaaaaggcaaggatactgatagaggaaatcaatactgctatgtcttcatgcccaaaagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0003712 GO:0003713 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0008214 GO:0008270 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031057 GO:0031063 GO:0031064 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031490 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032922 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034647 GO:0034648 GO:0034720 GO:0034721 GO:0035064 GO:0036211 GO:0042393 GO:0043086 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051090 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090311 GO:0097159 GO:0140030 GO:0140034 GO:0140096 GO:0140110 GO:1901363 GO:1901564 GO:1901725 GO:1901726 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990837 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID JmjC JmjN PHD PLU-1 zf-C5HC2

Protein Analysis

136

Amino Acids

15.79

Weight (kDa)

6.24

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63490 AT1G63490 AT1G63490 AT1G63490
fragaria_vesca	FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 FvH4_5g02310 FvH4_5g02310
malus_domestica	MD06G1081900.v1.1 MD14G1103700.v1.1
prunus_persica	Prupe.5G099000_v2.0.a1 Prupe.5G099000_v2.0.a1 Prupe.5G099000_v2.0.a1 Prupe.5G099000_v2.0.a1
pyrus_communis	pycom06g07880 pycom14g09970
rosa_chinensis	RchiOBHm_Chr7g0197841
rosa_laevigata	RLG00000003906
rosa_multiflora	Rmu_co8257227.1_g000001 Rmu_co8363405.1_g000001 Rmu_sc0034285.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258150
rosa_rugosa	Rorug07G0043800 Rorug07G0043900
rosa_samantha	Rh7AG167800 Rh7BG170700 Rh7CG177100 Rh7DG169600
rosa_wichuraiana	Rw7G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	243
AciI	CCGC	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	103, 172, 224, 337
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	2 cut(s)	110, 179
AluI	AGCT	2 cut(s)	110, 179
Alw21I	GWGCWC	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	90, 384
Bbv12I	GWGCWC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	354
Bme1390I	CCNGG	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	2 cut(s)	90, 384
BsaJI	CCNNGG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	7
Bsp68I	TCGCGA	1 cut(s)	243
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 353
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstUI	CGCG	1 cut(s)	243
BstV2I	GAAGAC	2 cut(s)	90, 384
BsuI	GTATCC	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	50
BtuMI	TCGCGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	48
CviAII	CATG	2 cut(s)	8, 396
CviJI	RGCY	5 cut(s)	40, 110, 128, 179, 319
CviKI_1	RGCY	5 cut(s)	40, 110, 128, 179, 319
DdeI	CTNAG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	11, 399
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	2 cut(s)	7, 395
FokI	GGATG	1 cut(s)	37
GlaI	GCGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	11, 399
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	136, 183
Hpy188III	TCNNGA	3 cut(s)	78, 152, 242
HpyAV	CCTTC	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 353
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	2 cut(s)	11, 399
HspAI	GCGC	1 cut(s)	46
LpnPI	CCDG	5 cut(s)	91, 114, 306, 322, 333
LweI	GCATC	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	95, 271, 384
MhlI	GDGCHC	1 cut(s)	7
MluCI	AATT	4 cut(s)	13, 116, 166, 219
MnlI	CCTC	2 cut(s)	187, 364
MseI	TTAA	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	26, 353
NlaIII	CATG	2 cut(s)	11, 399
NruI	TCGCGA	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
RruI	TCGCGA	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	7
SetI	ASST	2 cut(s)	112, 181
SfaNI	GCATC	1 cut(s)	334
Sse9I	AATT	4 cut(s)	13, 116, 166, 219
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	319
TasI	AATT	4 cut(s)	13, 116, 166, 219
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	155, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.