Rh7BG170700

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004720
Physical Location & Seq
Forward (+)
13301525 .. 13315625
14101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG170700.1

Sequence Viewer

Length: 5556 bp
ATGGGTAAAGGAAGACCTAGGGCTGTGGAGAAGGGGGTGGTGGGGCCCAATTTGAGTGCTTCATCGTCTTCTTCGTCTGGGTCGTCGTTGACCATACCATCTGCACCTGTGTATTACCCTAGTGAGGATGAGTTTAGGGATCCTTTGGAGTATATATGTAAGATCAGGGCTGAGGCTGAGTCCTACGGGATTTGTAGGATAGTTCCGCCGAGTAGCTGGAAGCCCCCATTTGCTTTGGACTTGGATTCGTTTACATTTCCGACGAAGACGCAGGCCATTCACCAGTTGCAGGTGAGGCCTGCGTCGTGTGATTCAAAGACTTTTGAGTTGGAGTACAATAGGTTTTTGGAGGATCATTGTGGCAAGAGGTTGAGGAGGAAGGTGGTTTTTGAAGGGGAGGAGTTGGATTTGTGTAAGCTGTTTAATGCTGCCAAGAGGTATGGGGGGTATGATAAGGTTGTCAAGGAGAAGAAGTGGGGGGAGGTTGTGAGGTTTGTGAGGCCGGCGAGGAAGGTGTCTGAGTGTTCGAAGCATGTGTTGCATCAGTTGTATCTGGAGCATTTGTTCGAGTATGAGGAGTATTATAATAAGCTGAATAAAGAGGGGGGTAGGGGTTGTAAGAGGGGTTTGCAGGAGGAGAAGAAGGGTGAACATAATGCTGAATGTTCTAGCTCCAAAAGGAGGCGAATGAATAATAACGATGGTGAGAGGGCTAGGGTTCGAAAGGTAAAGAAGGAAGAGGAGGAACATGATCAGATATGTGAGCAATGCAGAAGTGGGTTGCATGGGGAAGTGATGCTTTTGTGTGATAGGTGTGATAAGGGGTGGCACATATACTGTCTCTCCCCGCCTTTGAAACAGATCCCGTCAGGGAATTGGTACTGCCTAGATTGCTTGAATTCCGATGAAGATTGTTTTGGTTTTGTGCCCGGAAAGCGTTTATCACTGGAAGCTTTTAGGCGCGTGGCTGATCGGGCCAAGAAGAAATGGTTTGGGCCAGGACCTGCGTCTCGGGTGCAAATGGAGAAAAAGTTCTGGGAAATTGTGGAGGGTTCCATCGGTGAGGTTGAAGTTATGTATGGCAGCGACCTGGATACTTCCATTTATGGGAGCGGTTTTCCGCGTGTAAATGACCAGAGACAAGAGTCAGTTGAGGCCAAGATATGGGATGAATATTGCAGTAGCCCATGGAATCTCAATAACTTGCCCAAGTTGAAAGGATCAGTTCTTAGAGCTGTTCATAATAACATTACTGGTGTTATGGTGCCTTGGCTCTATATTGGGATGCTGTTTTCATCTTTTTGCTGGCATTTTGAAGATCATTGTTTTTATTCAATGAATTATCATCACTGGGGAGAGCCCAAATGCTGGTACAGCGTCCCTGGTAGTGAAGCCAGTGCCTTTGAAAAGGTGATGCGTAACAGTCTTCCTGATCTTTTTGATGCACAACCTGATTTGCTCTTTCAGCTTGTCACTATGTTAAATCCATCTGTTTTGCAAGAGAATGGAGTTCCTGTATACAGCGTCCTACAGGAGCCTGGAAATTTTGTCATCACCTTCCCCAGGTCTTACCATGGAGGTTTTAATCTTGGTTTGAATTGTGCAGAGGCTGTCAATTTTGCCCCTGCTGACTGGTTACCTCATGGTGGGTTTGGAGCAGGGCTCTATCAGCTTTATCATAAAACTGCAGTTCTGTCTCACGAGGAGCTCGTTTGTGTGCTAGCCAAGAGTGACTGTGACAGCAGAGTATCACCTTATTTGAAGAAAGAATTGATAAGAATATATAACAAGGAGAAAACCTGGAGAGAGCGCCTTTGGAAAAAAGGAATCACCAAATCATATCTCATGTCTTCTCGGAAGTTCCCTGAATATGTTGGTACTGAGGAGGATCCTACGTGCATTATATGCCAGCAATATCTTTACCTCTCTGGTGTGGTTTGTCGTTGTCGACCATCCACATTTGTATGTCTGGAGCACTCGGAACGTCTTTGTGAATGCAAATCCAGCAGACTCCGTCTTCATTATCGCCATACACTTGCAGAATTGCACGACTTGGTGCTTGCAATGGATAAACATTGTGGTGAGGAGACAACACAAAGTAGAACAAAAAAAAGACAACTCCAATGCTCCAATGAACCGACTGCTTTAACAAAAAAGGTCAAGGGTGGTCATGTTAATTTTGCTCAACTTGCGGACAAATGGCTTTTGCGCTCATCCAAGATTTTCCATAGTCGGTTTTCCAGAGAAGACTATGTTACTGTATTGAAAGAAGCTGAACAATTTGTTTGGGCTGGTTCAGAGATGAATAATGTTCGGGAAATGGCAAATAATTTGAAAGAAGCTCGGAAATGGGCAGAGGGTGTGAGAAAGTCTGTATCTAAAATTGAAAGTTGGTCATCTCATCGCGACAAAGATAAAGAGAAGATTCACTTGGAATATATCAATGAGTTGCTGAGTTTTGATTTGTTGCCCTGTGATGAGCCTGGGCATCTTATTTTGAAGGATTATGCTGAAAAGGCAAGGATACTGATAGAGGAAATCAATACTGCTATGTCTTCATGCCCAAAAATCCCTGAGTTGGAATTGTTGTACAACAGAGTTTGTGAGTTCCCTATTTATGTAAAAGAAAGTGAAAGGTTACAACAGAAAATTTCATCTGCAAAGGTTTGGATAGAAGGCATAACAAAATGCATCTCGGAGAAACAGCCTGCTGCAATTGAGCTTGATGTTCTTTACAAGTTGAAATTGGAGATCCCAGAAGTCGAAGTTCAACTCCCACAGATAGAAATGCTTTCTGATATAGTAGGGAAAGCTGAATCATGTCAAGCTCAATGTGTTGAAATTTTGAAAGGTCCTATTAGCCTCAAGGATATTGAGGTGCTTCTTCTAGAATGGGATGCTTTTACTGTCAACATACCAGAGTTGAAGCTTTTGAGGCAGTACCACACTGATGCTGTTTCTTGGAATGCTCGCTTTGAAGCTGTTCTTATGAAAGTTCATGAAAGAGAGGATCAACATAATGTAGTTGATGAGTTAGAGCACATTCTAAAGGATGGGGCAACTTTGAAAATCCACGTTGATCAGATGCCTTTGGTTGAGTTTGAGTTGAAAAAGGCTCGGTGCAGGGAAAAGGCTTTGAGGACACGAGAATCTAAATTGTCTCTGGACTTCATTCAAGAAGTGATGGTGGATGCACAAGGTTTACATATTGAGGGAGAACAAATATATGTTGATATGTCCAAAGTACTTGATGCTGCCATCCAATGGGAGGAAAGAGCAAAATATATTCTTGCACATGGAGCTCAAATTTCTGACTTTGAGGATGTTCTTAGGAGTTCGGAAAACATACATGTGACTTTACCTTCTCTCCTTGATGTCAAGGAGGCACTATCAAAGGCTATGGCCTGGTTGAGTAGATCTGAGCCGTTTCTTGTGCATTGTTCTTTGTTGGAATCTGGCTCAAGTTCTTTACTGAAAGTTGACACCTTGAAGGAGTTGATTTCTGAGTCGAAGAATCTTAAAGTATCTATGAACGAAATTAAGATTCTTGAGACTGTTTTGATGAACTGTGAGGAATGGGAGCATGATGCTTGCTCTCTACTGCAAGATTCAAGATGCTTATTGGATATGACGACCATTGGTGAGGGGATGAGTGAGGAACTTATTTCCAAGATTGAAAATGTACTTGCAAGAATAGGATCCATGGAAAACACTGGTTTATCTCTTGCTTTTGACTTTGTTGAGCTTGCAAAACTCAAGGATGCTTGTTCTCTGCTGCAATGGTGTAAGAAGGCTATCTCTTTCTGCTCTGCTGCTCCTACTCTCGAGGATGTTGAGAGTTTGATGAGTGATGCAGAGACTTCATGTTGTACAAATGCCTCTGGTGCACTCTGTGACTTGTTGTTTGAAGGAGTCAAATGGCTTAGGCAAGCTACAAAGATTATTTCTGCATCTAGGAATTCTACAAGATGCAAGTTGAGTGAAGCTGAAGAAGTTCTTACTGATTCCCAGAGTATTAGTATCTCCTTCCCTCTGACAGTTACTCAAATTGAAACTGCCATTGAGAAACATAAGTCTTGGCTAGAGCAAGTGCATCAATTTTTCAGCCTAAGGCTGGGGGAACGATCTTGGTCTGTTATATTACAGCTAAAGGAGCTTGGGATTGCTGGTGCTTTCTATTGCCCAGAACTAGATTCAATATTATCTGAAGTTGAAAGGGTTCAGAAGTGGAAGCGACAATGCATGGATATTTTCAGGATTGTAGAGGAGAATTCACTGCTTGGTTCTCTAGAAAAGATACGACAGAATCTGGATAGATCTATGCATATATATGACAAGGCACATGGTTTGAAAGAGGAAGGTTCTTATGTGTGCTGCTCCATTGGTTCTCTGGATCAGGAGTTTCTTACCTGTTCTTTGTGCAAGGAATGCTACCATTTGCGGTGCTTAGGATCTTTGACAGTAGATGGGAAACAGTCAGCATATGTGTGCCTGTGTTGCCAGTATCTAGTATCTGGAACTTTGCAAAATGGAGGAAGTCCTCGGGGATTTGGAGGAGTTCGTCCAGCACTGCAAAAGATTATTGAACTCTTATCTGATGAAGAGGATTTCTGTGTTTGTATGGAAGAAAGAGAGATGTTGAAAGAGGTTTTGAAGCAAGCTCGGGTATGCAAGAGACACTTGGAAGGAATAGTGGATTTTGCATTAGCTTATTCGGACAAAGATCTGAGTGTCCTCTTCAAAAAACTAGCCACTGCTTTAAAGGCCATAGAGTTGGGAGGTTTTTATGACGATGAAGGTTATTGCAACCTTACATTGGCAATATCAAGATACTCGTGGAAAGTCAAAGTTCATAGATTACTCGAGGGTTCACAAAAGCCCACAATCCAACAGATTCAACAACATTTAAAAGAGAGAGTGGCCGTGAACATTCCACCTGAAGATTACTTTAAGCAAAAACTTACGGAACTGAAGTGCAGTGGCTTGCAGTGGGCAGATAAGGCTAAGAAGGTTGCTACTGATTCTGGGGCTCTCCCTCTGGAGAAAGTTTTTGAACTTATTTCTGAGGGTGAAAACTTACCTGTTCTTGTAGAGAAGGAACTTAAGCTATTGAAAGATCGGAGTATGCTTTATTGCATATGTAGAAAGCCTTATGATAAGAGAGCAATGATTGCATGTGACAAGTGTGATGAGTGGTATCACTTTGGTTGTGTGAAATTACGTTCCACACCGAAGGTTTACATTTGCCCTGCATGTGAGCCTCTAGCAGAAACATTGTTTTCATCAGCAGTAGTTGATAGTGAGAGATGTGCTGATGCCAAATTTGTAGAACCAAAAACACCCTCTCCTAAGCACACAAAGCCCAGGATGAGCCCAAACAAAGATGAGTTTATTGCAACACAAAAGATGGTTGCAAGAACAGATGACGCCAATGTTTTTAGGTCTTCTAGTGGGATAGACCGTTTATGGTGGCGAAATCGGAAGCCTTTCAGAAGGGCGGCTAAAAAACGAGCTGAGCTTGCTAGTCTCTCCCTATTTTCTCATTTGCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0003712 GO:0003713 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0008214 GO:0008270 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031057 GO:0031063 GO:0031064 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031490 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032922 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034647 GO:0034648 GO:0034720 GO:0034721 GO:0035064 GO:0036211 GO:0042393 GO:0043086 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051090 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090311 GO:0097159 GO:0140030 GO:0140034 GO:0140096 GO:0140110 GO:1901363 GO:1901564 GO:1901725 GO:1901726 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990837 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID JmjC JmjN PHD PLU-1 zf-C5HC2

Protein Analysis

1851

Amino Acids

211.32

Weight (kDa)

6.45

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 36 - 69 2.9e-16 jmjN domain
ARID PF01388 107 - 192 1.5e-10 ARID/BRIGHT DNA binding domain
PHD PF00628 254 - 298 8.3e-09 PHD-finger
JmjC PF02373 424 - 540 3.7e-43 JmjC domain, hydroxylase
zf-C5HC2 PF02928 633 - 685 7.4e-14 C5HC2 zinc finger
PLU-1 PF08429 750 - 1039 3.3e-16 PLU-1-like protein
PLU-1 PF08429 992 - 1195 2.1e-17 PLU-1-like protein
PLU-1 PF08429 1154 - 1418 4.7e-16 PLU-1-like protein
PHD PF00628 1712 - 1752 5.6e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AarI CACCTGC 1 cut(s) 280
Acc36I ACCTGC 2 cut(s) 280, 1012
AccB1I GGYRCC 1 cut(s) 1264
AccB7I CCANNNNNTGG 3 cut(s) 1164, 1368, 3264
AccBSI CCGCTC 1 cut(s) 1113
AccI GTMKAC 2 cut(s) 1518, 1948
AccII CGCG 3 cut(s) 963, 1123, 2406
AciI CCGC 7 cut(s) 206, 848, 1113, 1121, 2192, 4441, 5498
AcoI YGGCCR 1 cut(s) 4920
AcsI RAATTY 8 cut(s) 898, 1543, 2649, 2841, 3306, 3958, 4270, 5321
AcuI CTGAAG 4 cut(s) 4008, 4227, 4959, 4991
AcyI GRCGYC 1 cut(s) 5427
AdeI CACNNNGTG 1 cut(s) 3893
AfaI GTAC 9 cut(s) 335, 881, 1373, 1879, 2591, 2942, 3246, 3684, 3871
AflII CTTAAG 1 cut(s) 5102
AflIII ACRYGT 1 cut(s) 3349
AjnI CCWGG 9 cut(s) 997, 1089, 1381, 1537, 1562, 1799, 2482, 3404, 5363
AjuI GAANNNNNNNTTGG 4 cut(s) 900, 932, 2414, 2446
AloI GAACNNNNNNTCC 4 cut(s) 548, 580, 1016, 1048
Alw21I GWGCWC 5 cut(s) 1710, 1977, 3042, 3304, 3889
Alw44I GTGCAC 1 cut(s) 3885
AlwNI CAGNNNCTG 3 cut(s) 1004, 1610, 4309
Ama87I CYCGRG 5 cut(s) 1011, 3824, 4542, 4662, 4862
ApaI GGGCCC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 3885
ApeKI GCWGC 7 cut(s) 428, 1083, 2711, 3254, 3775, 3812, 4374
ApoI RAATTY 8 cut(s) 898, 1543, 2649, 2841, 3306, 3958, 4270, 5321
ArsI GACNNNNNNTTYG 2 cut(s) 3887, 3919
Asp700I GAANNNNTTC 5 cut(s) 1031, 2982, 3993, 4218, 5486
AspA2I CCTAGG 1 cut(s) 17
AspLEI GCGC 3 cut(s) 963, 1812, 2211
AspS9I GGNCC 6 cut(s) 44, 45, 975, 995, 1001, 2852
AsuC2I CCSGG 1 cut(s) 930
AsuII TTCGAA 2 cut(s) 527, 721
AsuNHI GCTAGC 1 cut(s) 1720
AvaI CYCGRG 5 cut(s) 1011, 3824, 4542, 4662, 4862
AvaII GGWCC 2 cut(s) 1001, 2852
AvrII CCTAGG 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 4109
BaeGI GKGCMC 3 cut(s) 48, 930, 3889
BamHI GGATCC 3 cut(s) 139, 1888, 3698
BanI GGYRCC 1 cut(s) 1264
BanII GRGCYC 7 cut(s) 48, 1362, 1665, 1710, 3304, 5032, 5375
BauI CACGAG 3 cut(s) 1700, 3144, 4834
BbsI GAAGAC 9 cut(s) 19, 60, 272, 1418, 1842, 2009, 2253, 2547, 5436
Bbv12I GWGCWC 5 cut(s) 1710, 1977, 3042, 3304, 3889
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 7 cut(s) 415, 1095, 2698, 3241, 3762, 3799, 4361
BceAI ACGGC 2 cut(s) 3409, 4907
BciT130I CCWGG 9 cut(s) 999, 1091, 1383, 1539, 1564, 1801, 2484, 3406, 5365
BciVI GTATCC 2 cut(s) 1087, 2517
BclI TGATCA 2 cut(s) 751, 3079
BcnI CCSGG 1 cut(s) 930
BfmI CTRYAG 2 cut(s) 1529, 1686
BfoI RGCGCY 1 cut(s) 1813
BfrI CTTAAG 1 cut(s) 5102
BfuAI ACCTGC 2 cut(s) 280, 1012
BfuI GTATCC 2 cut(s) 1087, 2517
BglII AGATCT 3 cut(s) 3416, 4316, 4723
BisI GCNGC 8 cut(s) 429, 1084, 2712, 3255, 3776, 3813, 4375, 5499
BlnI CCTAGG 1 cut(s) 17
BlpI GCTNAGC 1 cut(s) 5514
BlsI GCNGC 8 cut(s) 430, 1085, 2713, 3256, 3777, 3814, 4376, 5500
BmcAI AGTACT 1 cut(s) 3246
Bme18I GGWCC 2 cut(s) 1001, 2852
BmeT110I CYCGRG 5 cut(s) 1011, 3824, 4542, 4662, 4862
BmgT120I GGNCC 6 cut(s) 44, 45, 975, 995, 1001, 2852
BmiI GGNNCC 8 cut(s) 45, 46, 141, 1054, 1266, 1536, 1890, 3700
BmrI ACTGGG 1 cut(s) 1360
BmtI GCTAGC 1 cut(s) 1724
BmuI ACTGGG 1 cut(s) 1360
BoxI GACNNNNGTC 2 cut(s) 1006, 1144
BpiI GAAGAC 9 cut(s) 19, 60, 272, 1418, 1842, 2009, 2253, 2547, 5436
BplI GAGNNNNNCTC 2 cut(s) 1647, 1679
BpmI CTGGAG 4 cut(s) 575, 1822, 1991, 5060
Bpu10I CCTNAGC 4 cut(s) 171, 3923, 4447, 5349
Bpu1102I GCTNAGC 1 cut(s) 5514
Bpu14I TTCGAA 2 cut(s) 527, 721
BpuEI CTTGAG 4 cut(s) 2849, 3445, 3569, 3740
BpuMI CCSGG 1 cut(s) 930
BsaAI YACGTR 1 cut(s) 1896
BsaHI GRCGYC 1 cut(s) 5427
Bse118I RCCGGY 1 cut(s) 502
Bse1I ACTGG 8 cut(s) 283, 951, 1258, 1355, 1395, 1637, 3718, 4501
Bse21I CCTNAGG 1 cut(s) 4109
Bse3DI GCAATG 4 cut(s) 773, 2070, 3785, 5172
BseBI CCWGG 9 cut(s) 999, 1091, 1383, 1539, 1564, 1801, 2484, 3406, 5365
BseMI GCAATG 4 cut(s) 773, 2070, 3785, 5172
BseNI ACTGG 8 cut(s) 283, 951, 1258, 1355, 1395, 1637, 3718, 4501
BseSI GKGCMC 3 cut(s) 48, 930, 3889
BseXI GCAGC 7 cut(s) 415, 1095, 2698, 3241, 3762, 3799, 4361
BseYI CCCAGC 1 cut(s) 4114
BsgI GTGCAG 4 cut(s) 87, 1623, 3142, 4996
Bsh1236I CGCG 3 cut(s) 963, 1123, 2406
BshNI GGYRCC 1 cut(s) 1264
BsiHKAI GWGCWC 5 cut(s) 1710, 1977, 3042, 3304, 3889
BsiHKCI CYCGRG 5 cut(s) 1011, 3824, 4542, 4662, 4862
BsiSI CCGG 2 cut(s) 503, 930
BslFI GGGAC 1 cut(s) 1364
BsmBI CGTCTC 1 cut(s) 1014
BsmFI GGGAC 1 cut(s) 1364
BsmI GAATGC 3 cut(s) 2000, 2971, 4433
BsoBI CYCGRG 5 cut(s) 1011, 3824, 4542, 4662, 4862
Bsp119I TTCGAA 2 cut(s) 527, 721
Bsp120I GGGCCC 1 cut(s) 44
Bsp1407I TGTACA 2 cut(s) 2589, 3869
Bsp1720I GCTNAGC 1 cut(s) 5514
Bsp19I CCATGG 3 cut(s) 1187, 1573, 3702
Bsp68I TCGCGA 1 cut(s) 2406
BspACI CCGC 7 cut(s) 206, 848, 1113, 1121, 2192, 4441, 5498
BspFNI CGCG 3 cut(s) 963, 1123, 2406
BspHI TCATGA 1 cut(s) 2998
BspLI GGNNCC 8 cut(s) 45, 46, 141, 1054, 1266, 1536, 1890, 3700
BspMAI CTGCAG 1 cut(s) 1690
BspMI ACCTGC 2 cut(s) 280, 1012
BspOI GCTAGC 1 cut(s) 1724
BspT104I TTCGAA 2 cut(s) 527, 721
BspT107I GGYRCC 1 cut(s) 1264
BspTI CTTAAG 1 cut(s) 5102
BsrBI CCGCTC 1 cut(s) 1113
BsrDI GCAATG 4 cut(s) 773, 2070, 3785, 5172
BsrFI RCCGGY 1 cut(s) 502
BsrGI TGTACA 2 cut(s) 2589, 3869
BsrI ACTGG 8 cut(s) 283, 951, 1258, 1355, 1395, 1637, 3718, 4501
BssAI RCCGGY 1 cut(s) 502
BssNAI GTATAC 1 cut(s) 1519
BssNI GRCGYC 1 cut(s) 5427
BssSI CACGAG 3 cut(s) 1700, 3144, 4834
BssT1I CCWWGG 5 cut(s) 17, 1187, 1268, 1573, 3702
Bst1107I GTATAC 1 cut(s) 1519
Bst2BI CACGAG 3 cut(s) 1700, 3144, 4834
Bst2UI CCWGG 9 cut(s) 999, 1091, 1383, 1539, 1564, 1801, 2484, 3406, 5365
Bst6I CTCTTC 3 cut(s) 732, 4596, 4742
BstACI GRCGYC 1 cut(s) 5427
BstAFI CTTAAG 1 cut(s) 5102
BstAPI GCANNNNNTGC 4 cut(s) 538, 1905, 4428, 5171
BstAUI TGTACA 2 cut(s) 2589, 3869
BstBAI YACGTR 1 cut(s) 1896
BstBI TTCGAA 2 cut(s) 527, 721
BstDSI CCRYGG 3 cut(s) 1187, 1573, 3702
BstEII GGTNACC 1 cut(s) 1635
BstENI CCTNNNNNAGG 1 cut(s) 1561
BstFNI CGCG 3 cut(s) 963, 1123, 2406
BstH2I RGCGCY 1 cut(s) 1813
BstHHI GCGC 3 cut(s) 963, 1812, 2211
BstNI CCWGG 9 cut(s) 999, 1091, 1383, 1539, 1564, 1801, 2484, 3406, 5365
BstNSI RCATGY 4 cut(s) 536, 3353, 5178, 5256
BstPAI GACNNNNGTC 2 cut(s) 1006, 1144
BstPI GGTNACC 1 cut(s) 1635
BstSFI CTRYAG 2 cut(s) 1529, 1686
BstSLI GKGCMC 3 cut(s) 48, 930, 3889
BstUI CGCG 3 cut(s) 963, 1123, 2406
BstV1I GCAGC 7 cut(s) 415, 1095, 2698, 3241, 3762, 3799, 4361
BstV2I GAAGAC 9 cut(s) 19, 60, 272, 1418, 1842, 2009, 2253, 2547, 5436
BstX2I RGATCY 9 cut(s) 139, 861, 1888, 2751, 3416, 3698, 4316, 4451, 4723
BstXI CCANNNNNNTGG 1 cut(s) 4774
BstYI RGATCY 9 cut(s) 139, 861, 1888, 2751, 3416, 3698, 4316, 4451, 4723
BstZ17I GTATAC 1 cut(s) 1519
Bsu36I CCTNAGG 1 cut(s) 4109
BsuI GTATCC 2 cut(s) 1087, 2517
BtgI CCRYGG 3 cut(s) 1187, 1573, 3702
BtgZI GCGATG 1 cut(s) 2387
BtsI GCAGTG 5 cut(s) 4274, 4568, 4752, 4984, 4994
BtuMI TCGCGA 1 cut(s) 2406
BveI ACCTGC 2 cut(s) 280, 1012
CaiI CAGNNNCTG 3 cut(s) 1004, 1610, 4309
CciI TCATGA 1 cut(s) 2998
CfoI GCGC 3 cut(s) 963, 1812, 2211
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 6 cut(s) 44, 45, 975, 995, 1001, 2852
CseI GACGC 6 cut(s) 277, 291, 996, 1366, 1513, 5435
Csp6I GTAC 9 cut(s) 334, 880, 1372, 1878, 2590, 2941, 3245, 3683, 3870
CviQI GTAC 9 cut(s) 334, 880, 1372, 1878, 2590, 2941, 3245, 3683, 3870
DraI TTTAAA 2 cut(s) 4761, 4908
DraIII CACNNNGTG 1 cut(s) 3893
EaeI YGGCCR 1 cut(s) 4920
Eam1104I CTCTTC 3 cut(s) 732, 4596, 4742
EarI CTCTTC 3 cut(s) 732, 4596, 4742
EciI GGCGGA 1 cut(s) 195
Ecl136II GAGCTC 2 cut(s) 1708, 3302
Eco130I CCWWGG 5 cut(s) 17, 1187, 1268, 1573, 3702
Eco147I AGGCCT 1 cut(s) 298
Eco24I GRGCYC 7 cut(s) 48, 1362, 1665, 1710, 3304, 5032, 5375
Eco47I GGWCC 2 cut(s) 1001, 2852
Eco53kI GAGCTC 2 cut(s) 1708, 3302
Eco57I CTGAAG 4 cut(s) 4008, 4227, 4959, 4991
Eco81I CCTNAGG 1 cut(s) 4109
Eco88I CYCGRG 5 cut(s) 1011, 3824, 4542, 4662, 4862
Eco91I GGTNACC 1 cut(s) 1635
EcoICRI GAGCTC 2 cut(s) 1708, 3302
EcoNI CCTNNNNNAGG 1 cut(s) 1561
EcoO109I RGGNCCY 3 cut(s) 44, 1001, 2852
EcoO65I GGTNACC 1 cut(s) 1635
EcoRI GAATTC 3 cut(s) 898, 3958, 4270
EcoRII CCWGG 9 cut(s) 997, 1089, 1381, 1537, 1562, 1799, 2482, 3404, 5363
EcoT14I CCWWGG 5 cut(s) 17, 1187, 1268, 1573, 3702
EcoT22I ATGCAT 3 cut(s) 2693, 4244, 4326
EcoT38I GRGCYC 7 cut(s) 48, 1362, 1665, 1710, 3304, 5032, 5375
ErhI CCWWGG 5 cut(s) 17, 1187, 1268, 1573, 3702
Esp3I CGTCTC 1 cut(s) 1014
FaqI GGGAC 1 cut(s) 1364
FauI CCCGC 1 cut(s) 855
FauNDI CATATG 2 cut(s) 4483, 5138
FbaI TGATCA 2 cut(s) 751, 3079
FblI GTMKAC 2 cut(s) 1518, 1948
Fnu4HI GCNGC 8 cut(s) 429, 1084, 2712, 3255, 3776, 3813, 4375, 5499
FriOI GRGCYC 7 cut(s) 48, 1362, 1665, 1710, 3304, 5032, 5375
Fsp4HI GCNGC 8 cut(s) 429, 1084, 2712, 3255, 3776, 3813, 4375, 5499
GlaI GCGC 3 cut(s) 962, 1811, 2210
GluI GCNGC 8 cut(s) 429, 1084, 2712, 3255, 3776, 3813, 4375, 5499
GsaI CCCAGC 1 cut(s) 4118
GsuI CTGGAG 4 cut(s) 575, 1822, 1991, 5060
HaeII RGCGCY 1 cut(s) 1813
HapII CCGG 2 cut(s) 503, 930
HgaI GACGC 6 cut(s) 277, 291, 996, 1366, 1513, 5435
HhaI GCGC 3 cut(s) 963, 1812, 2211
Hin1I GRCGYC 1 cut(s) 5427
Hin6I GCGC 3 cut(s) 961, 1810, 2209
HinP1I GCGC 3 cut(s) 961, 1810, 2209
HincII GTYRAC 4 cut(s) 90, 1949, 2911, 3481
HindII GTYRAC 4 cut(s) 90, 1949, 2911, 3481
HindIII AAGCTT 2 cut(s) 951, 2927
HpaII CCGG 2 cut(s) 503, 930
Hpy99I CGWCG 3 cut(s) 88, 265, 307
HpyCH4IV ACGT 4 cut(s) 1895, 1984, 3075, 5221
HpySE526I ACGT 4 cut(s) 1895, 1984, 3075, 5221
Hsp92I GRCGYC 1 cut(s) 5427
HspAI GCGC 3 cut(s) 961, 1810, 2209
KroI GCCGGC 1 cut(s) 502
KroNI GCCGGC 1 cut(s) 504
Ksp22I TGATCA 2 cut(s) 751, 3079
Lsp1109I GCAGC 7 cut(s) 415, 1095, 2698, 3241, 3762, 3799, 4361
MaeII ACGT 4 cut(s) 1895, 1984, 3075, 5221
MbiI CCGCTC 1 cut(s) 1113
MfeI CAATTG 1 cut(s) 2715
MflI RGATCY 9 cut(s) 139, 861, 1888, 2751, 3416, 3698, 4316, 4451, 4723
MlyI GAGTC 5 cut(s) 188, 1154, 2004, 3515, 3921
MmeI TCCRAC 6 cut(s) 284, 309, 384, 2559, 3429, 4912
Mph1103I ATGCAT 3 cut(s) 2693, 4244, 4326
MroNI GCCGGC 1 cut(s) 502
MroXI GAANNNNTTC 5 cut(s) 1031, 2982, 3993, 4218, 5486
MslI CAYNNNNRTG 6 cut(s) 1963, 2079, 2949, 3350, 4329, 4486
MspCI CTTAAG 1 cut(s) 5102
MspI CCGG 2 cut(s) 503, 930
MunI CAATTG 1 cut(s) 2715
Mva1269I GAATGC 3 cut(s) 2000, 2971, 4433
MvaI CCWGG 9 cut(s) 999, 1091, 1383, 1539, 1564, 1801, 2484, 3406, 5365
MvnI CGCG 3 cut(s) 963, 1123, 2406
NaeI GCCGGC 1 cut(s) 504
NciI CCSGG 1 cut(s) 930
NcoI CCATGG 3 cut(s) 1187, 1573, 3702
NdeI CATATG 2 cut(s) 4483, 5138
NgoMIV GCCGGC 1 cut(s) 502
NheI GCTAGC 1 cut(s) 1720
NlaIV GGNNCC 8 cut(s) 45, 46, 141, 1054, 1266, 1536, 1890, 3700
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 6 cut(s) 1471, 1730, 1736, 3352, 3893, 5177
NruI TCGCGA 1 cut(s) 2406
NsiI ATGCAT 3 cut(s) 2693, 4244, 4326
NspI RCATGY 4 cut(s) 536, 3353, 5178, 5256
NspV TTCGAA 2 cut(s) 527, 721
PaeR7I CTCGAG 2 cut(s) 3824, 4862
PagI TCATGA 1 cut(s) 2998
PaqCI CACCTGC 1 cut(s) 280
PceI AGGCCT 1 cut(s) 298
PciI ACATGT 1 cut(s) 3349
PcsI WCGNNNNNNNCGW 3 cut(s) 71, 80, 1707
PctI GAATGC 3 cut(s) 2000, 2971, 4433
PdiI GCCGGC 1 cut(s) 504
PdmI GAANNNNTTC 5 cut(s) 1031, 2982, 3993, 4218, 5486
PflFI GACNNNGTC 1 cut(s) 2013
PflMI CCANNNNNTGG 3 cut(s) 1164, 1368, 3264
PkrI GCNGC 8 cut(s) 430, 1085, 2713, 3256, 3777, 3814, 4376, 5500
PleI GAGTC 5 cut(s) 187, 1153, 2004, 3514, 3920
PpsI GAGTC 5 cut(s) 187, 1153, 2004, 3514, 3920
Ppu21I YACGTR 1 cut(s) 1896
PpuMI RGGWCCY 2 cut(s) 1001, 2852
PscI ACATGT 1 cut(s) 3349
PshAI GACNNNNGTC 2 cut(s) 1006, 1144
PsiI TTATAA 1 cut(s) 585
Psp124BI GAGCTC 2 cut(s) 1710, 3304
Psp5II RGGWCCY 2 cut(s) 1001, 2852
Psp6I CCWGG 9 cut(s) 997, 1089, 1381, 1537, 1562, 1799, 2482, 3404, 5363
PspEI GGTNACC 1 cut(s) 1635
PspFI CCCAGC 1 cut(s) 4114
PspGI CCWGG 9 cut(s) 997, 1089, 1381, 1537, 1562, 1799, 2482, 3404, 5363
PspN4I GGNNCC 8 cut(s) 45, 46, 141, 1054, 1266, 1536, 1890, 3700
PspOMI GGGCCC 1 cut(s) 44
PspPI GGNCC 6 cut(s) 44, 45, 975, 995, 1001, 2852
PspPPI RGGWCCY 2 cut(s) 1001, 2852
PspXI VCTCGAGB 1 cut(s) 4862
PstI CTGCAG 1 cut(s) 1690
PstNI CAGNNNCTG 3 cut(s) 1004, 1610, 4309
PsuI RGATCY 9 cut(s) 139, 861, 1888, 2751, 3416, 3698, 4316, 4451, 4723
PsyI GACNNNGTC 1 cut(s) 2013
RruI TCGCGA 1 cut(s) 2406
RsaI GTAC 9 cut(s) 335, 881, 1373, 1879, 2591, 2942, 3246, 3684, 3871
RsaNI GTAC 9 cut(s) 334, 880, 1372, 1878, 2590, 2941, 3245, 3683, 3870
RseI CAYNNNNRTG 6 cut(s) 1963, 2079, 2949, 3350, 4329, 4486
SacI GAGCTC 2 cut(s) 1710, 3304
SalI GTCGAC 1 cut(s) 1947
SatI GCNGC 8 cut(s) 429, 1084, 2712, 3255, 3776, 3813, 4375, 5499
Sau96I GGNCC 6 cut(s) 44, 45, 975, 995, 1001, 2852
ScaI AGTACT 1 cut(s) 3246
SchI GAGTC 5 cut(s) 188, 1154, 2004, 3515, 3921
SfcI CTRYAG 2 cut(s) 1529, 1686
Sfr274I CTCGAG 2 cut(s) 3824, 4862
SfuI TTCGAA 2 cut(s) 527, 721
SinI GGWCC 2 cut(s) 1001, 2852
SlaI CTCGAG 2 cut(s) 3824, 4862
SmiMI CAYNNNNRTG 6 cut(s) 1963, 2079, 2949, 3350, 4329, 4486
SmlI CTYRAG 7 cut(s) 2864, 3460, 3548, 3755, 3824, 4862, 5102
SmoI CTYRAG 7 cut(s) 2864, 3460, 3548, 3755, 3824, 4862, 5102
SseBI AGGCCT 1 cut(s) 298
SsiI CCGC 7 cut(s) 206, 848, 1113, 1121, 2192, 4441, 5498
SspI AATATT 2 cut(s) 1175, 4200
SstI GAGCTC 2 cut(s) 1710, 3304
StuI AGGCCT 1 cut(s) 298
StyI CCWWGG 5 cut(s) 17, 1187, 1268, 1573, 3702
TaiI ACGT 4 cut(s) 1898, 1987, 3078, 5224
TaqI TCGA 8 cut(s) 527, 567, 721, 1948, 2763, 3509, 3825, 4863
TatI WGTACW 5 cut(s) 333, 2589, 3244, 3682, 3869
TauI GCSGC 1 cut(s) 5501
TseFI GTSAC 6 cut(s) 1471, 1730, 1736, 3352, 3893, 5177
TseI GCWGC 7 cut(s) 428, 1083, 2711, 3254, 3775, 3812, 4374
Tsp45I GTSAC 6 cut(s) 1471, 1730, 1736, 3352, 3893, 5177
TspGWI ACGGA 2 cut(s) 2003, 4979
Tth111I GACNNNGTC 1 cut(s) 2013
Van91I CCANNNNNTGG 3 cut(s) 1164, 1368, 3264
Vha464I CTTAAG 1 cut(s) 5102
VneI GTGCAC 1 cut(s) 3885
VpaK11BI GGWCC 2 cut(s) 1001, 2852
XagI CCTNNNNNAGG 1 cut(s) 1561
XapI RAATTY 8 cut(s) 898, 1543, 2649, 2841, 3306, 3958, 4270, 5321
XbaI TCTAGA 2 cut(s) 2887, 4288
XceI RCATGY 4 cut(s) 536, 3353, 5178, 5256
XcmI CCANNNNNNNNNTGG 1 cut(s) 4387
XhoI CTCGAG 2 cut(s) 3824, 4862
XmaJI CCTAGG 1 cut(s) 17
XmiI GTMKAC 2 cut(s) 1518, 1948
XmnI GAANNNNTTC 5 cut(s) 1031, 2982, 3993, 4218, 5486
ZrmI AGTACT 1 cut(s) 3246
Zsp2I ATGCAT 3 cut(s) 2693, 4244, 4326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.