Rmu_co8363405.1_g000001

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8363405.1
OG0004720
Physical Location & Seq
Reverse (-)
419 .. 1090
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8363405.1_g000001.1.cds

Sequence Viewer

Length: 497 bp
tttctgagggtgaaaacttacctgttcttgtagagaaggaacttaagctattgaaagatcggagtatgctttattgcatatgtagaaagccttatgataagagagcaatgattgcatgtgacaagtgtgatgagtggtatcactttggttgtgtgaaattacgttccacaccgaaggtttacatttgccctgcatgtgagcctctagcagagacattgtcttcatcagcagtagttgatagtgagagatgtgctgatgccaaatttgtagaaccaaaaacaccctcacctaagcacacaaagcccaggatgagcccaaacaaagatgagtttattgcaacacaaaagatggttgcaagaacagatgacgccaatgtttttaggtcttctagtgggatagaccgtttatggtggcgaaatcggaagcctttcagaagggcggctaaaaaacgagctgagcttgatagtctctctctattttctcatttgcaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0003712 GO:0003713 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0008214 GO:0008270 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031057 GO:0031063 GO:0031064 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031490 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032922 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034647 GO:0034648 GO:0034720 GO:0034721 GO:0035064 GO:0036211 GO:0042393 GO:0043086 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051090 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090311 GO:0097159 GO:0140030 GO:0140034 GO:0140096 GO:0140110 GO:1901363 GO:1901564 GO:1901725 GO:1901726 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990837 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID JmjC JmjN PHD PLU-1 zf-C5HC2

Protein Analysis

164

Amino Acids

18.88

Weight (kDa)

9.22

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 439
AcsI RAATTY 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 368
AflII CTTAAG 1 cut(s) 43
AgsI TTSAA 1 cut(s) 54
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 3 cut(s) 48, 454, 459
AluI AGCT 3 cut(s) 48, 454, 459
Alw26I GTCTC 2 cut(s) 205, 472
ApoI RAATTY 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 22, 278
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 2 cut(s) 212, 377
BccI CCATC 1 cut(s) 342
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 205, 472
BfaI CTAG 2 cut(s) 205, 389
BfrI CTTAAG 1 cut(s) 43
BisI GCNGC 1 cut(s) 440
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 1 cut(s) 441
Bme1390I CCNGG 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 1 cut(s) 246
BpiI GAAGAC 2 cut(s) 212, 377
Bpu10I CCTNAGC 1 cut(s) 290
Bpu1102I GCTNAGC 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 205, 472
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 57
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 447
BspTI CTTAAG 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 368
BstAFI CTTAAG 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 112
BstDEI CTNAG 3 cut(s) 5, 290, 455
BstF5I GGATG 1 cut(s) 314
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 2 cut(s) 205, 472
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 112, 300
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 119, 197
BstSCI CCNGG 1 cut(s) 304
BstV2I GAAGAC 2 cut(s) 212, 377
BtsCI GGATG 1 cut(s) 314
CseI GACGC 1 cut(s) 376
CviAII CATG 2 cut(s) 116, 194
CviJI RGCY 9 cut(s) 48, 90, 201, 303, 314, 426, 442, 454, 459
CviKI_1 RGCY 9 cut(s) 48, 90, 201, 303, 314, 426, 442, 454, 459
DdeI CTNAG 3 cut(s) 5, 290, 455
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 2 cut(s) 119, 197
FaiI YATR 7 cut(s) 67, 79, 81, 95, 117, 195, 408
FatI CATG 2 cut(s) 115, 193
FauNDI CATATG 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 2 cut(s) 205, 389
GluI GCNGC 1 cut(s) 440
HgaI GACGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 2 cut(s) 119, 197
HphI GGTGA 2 cut(s) 22, 278
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 4 cut(s) 6, 62, 422, 433
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 3 cut(s) 30, 168, 428
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 6 cut(s) 77, 115, 193, 337, 355, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 300
HpyF3I CTNAG 3 cut(s) 5, 290, 455
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 2 cut(s) 119, 197
Kzo9I GATC 1 cut(s) 57
LpnPI CCDG 4 cut(s) 35, 203, 291, 318
LweI GCATC 1 cut(s) 246
MaeI CTAG 2 cut(s) 205, 389
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 2 cut(s) 212, 377
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 157, 262
MnlI CCTC 2 cut(s) 212, 294
MroXI GAANNNNTTC 1 cut(s) 427
MseI TTAA 1 cut(s) 44
MspCI CTTAAG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 112, 300
NdeI CATATG 1 cut(s) 79
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 119, 197
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 2 cut(s) 119, 197
PdmI GAANNNNTTC 1 cut(s) 427
PflFI GACNNNGTC 1 cut(s) 216
PkrI GCNGC 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PsyI GACNNNGTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 316
SetI ASST 8 cut(s) 24, 50, 165, 179, 291, 385, 456, 461
SfaNI GCATC 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 2 cut(s) 157, 262
SsiI CCGC 1 cut(s) 439
SspMI CTAG 2 cut(s) 205, 389
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 1 cut(s) 165
TasI AATT 2 cut(s) 157, 262
TauI GCSGC 1 cut(s) 442
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 212
Tth111I GACNNNGTC 1 cut(s) 216
Vha464I CTTAAG 1 cut(s) 43
XapI RAATTY 1 cut(s) 262
XceI RCATGY 2 cut(s) 119, 197
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 2 cut(s) 205, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.