Rh7DG169600

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004720
Physical Location & Seq
Forward (+)
15202854 .. 15217928
15075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG169600.1

Sequence Viewer

Length: 4143 bp
ATGCGTAACAGTCTTCCTGATCTTTTTGATGCACAACCTGATTTGCTCTTTCAGCTTGTCACTATGTTAAATCCATCTGTTTTGCAAGAGAATGGAGTTCCTGTATACAGCGTCCTACAGGAGCCTGGAAATTTTGTCATCACCTTCCCCAGGTCTTACCATGGAGGTTTTAATCTTGGTTTGAATTGTGCAGAGGCTGTCAATTTTGCCCCTGCTGACTGGTTACCTCATGGTGGGTTTGGAGCAGGGCTCTATCAGCGTTATCATAAAACTGCAGTTCTGTCTCACGAGGAGCTCGTCTGTGTGCTAGCCAAGAGTGGCTGTGACAGCAGAGTATCACCTTATTTGAAGAAAGAATTGATAAGAATATATAACAAGGAGAAAACCTGGAGAGAGCGCCTTTGGAAAAAAGGAATCACCAAATCATCTCTTATGTCTTCTCGGAAGTTCCCTGAATATGTTGGTACTGAGGAGGATCGTACGTGCATTATATGCCAGCAATATCTTTACCTCTCTGGTGTGGTTTGTCATTGTCGACCATCCACATTTGTATGTCTGGAGCACTCAGAACGTCTTTGTGAATGCAAATCCAGCAGACTCCGTCTTCACTATCGCCATACACTTGCAGAATTGCATGACTTGGTGCTTGCAATGGATAAACATTGTGGTGAGGAGACAGCACAAAGTAGAACAAAAAAAAGACAACTCCAATGCTCCAATGAACCAAGTGCTTTAACAAAAAAGGTCAAGGGTGCTCATGTTAATTTTGCTCAACTTGCGGACAAATGGCTTTTGCGCTCATCCAAGATTTTCCATAGTCGGTTTTCCAGAGAAGACTATGTTACTATATTGAAAGAAGCTGAACAATTTGTTTGGGCTGGTTCAGAGATGAATAATGTTCGGGAAATGGCAAATAATTTGAAAGAAGCTCGGAAATGGGCAGAGGTTGTGAGAAAGTCTGTATCTAAAATTGAAAGTTGGTCATCTCATCGCGACAAAGATATAGAGAAGATTCACTTGGAATATATCAATGAGTTGCTGAGTTTTGATTTGTTGCCCTGTGATGAGCCTGGGCATCTTATTTTGAAGGATTATGCTGAAAAGGCAAGGATACTGATAGAGGAAATCAATACTGCTATGTCTTCATGCCCAAAAATCCCTGAGTTGGAATTGTTGTACTACAGAGTTTGTGAGTTCCCTATTTATGTAAAAGAAAGTGAAAGGTTACAACACAAAATTTCATCTGCAAAGGTTTGGATAGAAGGCATAACAAAATGCATCTCGGAGAAACAGCCTGCTGCAATTGAGCTTGATGTTCTTTACAAGTTGAAATTGGAGATCCCAGAAATCGAAGTTCAACTCCCACAGATAGAAATGCTTTCTGATATAGTATGGAAAGCTGATTCATGTCGAGCTCAATGTGTTGAAATTTTGAAAGGTCCTATTGGCCTCAAGGATATTGAGGTGCTTCTTCTAGAATGGGATGCTTTTACTGTCAACATACCAGAGTTGAAGCTTTTGAGGCAGTACCACACTGATGCTGTTTCTTGGAATGCTCGCTTTGAAGCTGTTCTTATGAAAGTTCATGAAAGAGAGGATCAACATAATGTAGTTGATGAGTTAGAGCACATTCTAAAGGATGGGGCAACTTTGAAAATCCAAGTTGATCAGATGCCTTTGGTTGAGTTTGAGTTGAAAAAGGCTCAGTGCAGGGAAAAGGCTTTGAGGACACGAGAATCGAAATTGTCTCTGGACTTCATTCAAGAAGTGATGGTGGATGCACAAGGTTTACATATTGAGGGAGAACAAATATATGTTGATATGTCCAAAGTACTTGATGCTGCCATCCAATGGGAGGAAAGAGCAAAATATATTCTTGCACATGGAGCTCAAATTTCTGACTTTGAGGATGTTCTTAGGAGTTCGGAAAACATACATGTGACTTTACCTTCTCTCCTTGATGTCAAGGAGGCACTATCAAAGGCTATGGCCTGGTTGAGTAGATCTGAGCCGTTTCTTGTGCATTGTTCTTCGTTGGAATCTGGCTCAAGTTCTTTGCTGAAAGTTCACACCTTGAAGGAGTTGATTTCTGAGTCGAAGAATCTTAAAGTATCTATGAAAGAAATTAAGATTCTTGAGACTGTTTTGGTGAACTGTGAGGAATGGGAGCATGATGCTTGCTCTCTACTGCAAGATTCAAGATGCCTATTGGATATGACGGCCATTGGTGAGGGGATAAGTGAGGGACTTATTTCCAAGATTGAAAATGTACTTGCAAGAATAGGATCCATGGAAAACACTGGTTTATCTCTTACTTTTGACTTTGTTGAGCTTGCAAAACTCAAGGATGCTTGTTCTCTGCTGCAATGGTGTAAGAAGGCTATCTCTTTCTGCTCTGCTGCTCCTACTCTTGAGGATGTTGAGAGTTTGATGAGTGATGCGGAGACTTCATGTTGTACAAATGCCTCTGGTGCACTCTGTGACTTGTTGTTTGAAGGAGTCAAATGGCTTAGGCAAGCTACAAAGATTATTTCTGCATCTAGGAATTCTACAAGATGCAAGTTGAGTGAAGCTGAAGAAGTTCTTACTGATTCCCAGAGTATTAGTATCTCCTTCCCTCTGACAGTTACTCAAATTGAAACTGCCATTGAGAGACATAAGTCTTGGCTAGAGCAAGTGCATCAATTTTTCAGCCTAAGGCTGGGGGAACGATCTTGGTCTGTTATATTACAGCTAAAGGAGCTTGGGATTGCTGGTGCTTTCTATTGCCCAGAACTAGATTCAATATTATCTGAAGTTGAAAGGGTTCAGAAGTGGAAGCGACAATGCATGGATATTTTCAGGATTGTAGAGGAGAATTCACTGCTTGGTTCTCTAGAAAAGATACGACAGAATCTGGATAGATCTCTGCATATATATGACAAGGCACATGGTTTGAAAGAGGAAGGTTCTTATGCGTGCTGCTCCATTGGTTCTCTGGATCAGGAGTTTCTTACCTGTTCTTTGTGCAAGGAATGCTACCATTTGCGGTGCCTAGGATCTTTGACAGTAGATGGGAAACAGTCAGCATATGTGTGCCTGTGTTGCCAGTATCTAGTATCTGGAACTTTGCAAAATGGAGGAAGTCCTCGGGGATTTGGAGGAGCTCGTCCAGCACTGCAAAAGATTATTGAACTCTTATCTGATGAAGAGGATTTCTGTGTTTGTATGGAAGAAAGAAAGATGTTGAAAGAGGTTTTGAAGCAAGCTCGGGAATGCAAGAGACACTTGGAAGGAATAGTGGGTTTTGCATTAGCTTATTCGGACAAAGATCTGAGTGTCCTCTTCGAAAAACTAGCCACTGCTTTAAAGGCCATAGAGTTGGGAGGTTTTTATGACGATGAAGGTTATTGCAACCTTACATTGGCAATATCAAGATACTCGTGGAAAGTCAAAGTTCATAGATTACTCGAGGGTTCACAAAAGCCCACAATCCAACAGATTCAACAGCATTTAAAAGAGAGAGTGGCCGTGAACATTCCACCTGAAGATTACTTTAAGCAAAAACTTACGGAACTGAAGTGCAGTGGCTTGCAGTGGGCAGATAAGGCTAAGAAGGTTGCTGCTGATTCTGGGGCTCTCCCTCTGGAGAAAGTTTTTGAACTTATTTCTGAGGGTGAAAACTTACCTGTTCTTGTAGAGAAGGAACTTAAGCTATTGAAAGATCGGAGTATGCTTTATTGCATATGTAGAAAGCCTTATGATAAGAGAGCAATGATTGCATGTGACAAGTGTGATGAGTGGTATCACTTTGGTTGTGTGAAATTACGTTCCACACCGAAGGTTTACATTTGCCCTGCATGTGAGCCTCTAGCAGAGACATTGTGTTCATCAGCAGTAGTTGATAGTGAGAGATGTGCTGATGCCAAATTTGTAGAACCAAAAACACCCTCACCTAAGCACACAAAGCCCAGGATGAGCCCAAACAAAGATGAGTTTATTGCAACACAAAAGATGGTTGCAAGAACAGATGACGCCAATGTTTTTAGGTCTTCTAGTGGGATAGACCGTTTATGGTGGCGAAATCGGAAGCCTTTCAGAAGGGCGGCTAAAAAACGAGCTGAGCTTGATAGTCTCTCTCTATTTTCTCATTTGCAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0003712 GO:0003713 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0008214 GO:0008270 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031057 GO:0031063 GO:0031064 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031490 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032922 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034647 GO:0034648 GO:0034720 GO:0034721 GO:0035064 GO:0036211 GO:0042393 GO:0043086 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051090 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090311 GO:0097159 GO:0140030 GO:0140034 GO:0140096 GO:0140110 GO:1901363 GO:1901564 GO:1901725 GO:1901726 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990837 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID JmjC JmjN PHD PLU-1 zf-C5HC2

Protein Analysis

1380

Amino Acids

157.02

Weight (kDa)

6.25

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 9 - 69 1.2e-18 JmjC domain, hydroxylase
zf-C5HC2 PF02928 162 - 214 4.7e-14 C5HC2 zinc finger
PLU-1 PF08429 521 - 722 1.7e-16 PLU-1-like protein
PLU-1 PF08429 682 - 947 7.7e-16 PLU-1-like protein
PHD PF00628 1241 - 1281 4.1e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 3030
AccB7I CCANNNNNTGG 1 cut(s) 1851
AccI GTMKAC 2 cut(s) 105, 535
AccII CGCG 1 cut(s) 993
AciI CCGC 4 cut(s) 779, 2441, 3028, 4085
AclWI GGATC 7 cut(s) 483, 1333, 1605, 2280, 2293, 2988, 3046
AcoI YGGCCR 2 cut(s) 2220, 3507
AcsI RAATTY 7 cut(s) 130, 1236, 1428, 1893, 2545, 2857, 3908
AcuI CTGAAG 4 cut(s) 2595, 2814, 3546, 3578
AcyI GRCGYC 1 cut(s) 4014
AdeI CACNNNGTG 1 cut(s) 2480
AfaI GTAC 7 cut(s) 466, 481, 1178, 1529, 1833, 2271, 2458
AfiI CCNNNNNNNGG 7 cut(s) 150, 233, 1165, 1851, 1855, 2701, 3403
AflII CTTAAG 1 cut(s) 3689
AflIII ACRYGT 1 cut(s) 1936
AjnI CCWGG 6 cut(s) 124, 149, 386, 1069, 1991, 3950
AjuI GAANNNNNNNTTGG 2 cut(s) 1001, 1033
Alw21I GWGCWC 8 cut(s) 297, 564, 757, 1417, 1629, 1891, 2476, 3148
Alw26I GTCTC 9 cut(s) 288, 668, 1752, 2132, 2438, 2647, 3256, 3851, 4118
Alw44I GTGCAC 1 cut(s) 2472
AlwI GGATC 7 cut(s) 483, 1333, 1605, 2280, 2293, 2988, 3046
AlwNI CAGNNNCTG 2 cut(s) 197, 2896
Ama87I CYCGRG 3 cut(s) 3129, 3249, 3449
AoxI GGCC 5 cut(s) 1447, 1989, 2220, 3351, 3507
ApaLI GTGCAC 1 cut(s) 2472
ApeKI GCWGC 6 cut(s) 1298, 1841, 2362, 2399, 2961, 3602
ApoI RAATTY 7 cut(s) 130, 1236, 1428, 1893, 2545, 2857, 3908
ArsI GACNNNNNNTTYG 2 cut(s) 2474, 2506
Asp700I GAANNNNTTC 4 cut(s) 1569, 2580, 2805, 4073
AspA2I CCTAGG 1 cut(s) 3034
AspLEI GCGC 2 cut(s) 399, 798
AspS9I GGNCC 1 cut(s) 1439
AsuHPI GGTGA 8 cut(s) 133, 330, 409, 680, 2161, 2240, 3668, 3924
AsuII TTCGAA 1 cut(s) 3327
AsuNHI GCTAGC 1 cut(s) 307
AvaI CYCGRG 3 cut(s) 3129, 3249, 3449
AvaII GGWCC 1 cut(s) 1439
AvrII CCTAGG 1 cut(s) 3034
AxyI CCTNAGG 1 cut(s) 2696
BaeGI GKGCMC 1 cut(s) 2476
BamHI GGATCC 1 cut(s) 2285
BanI GGYRCC 1 cut(s) 3030
BanII GRGCYC 7 cut(s) 252, 297, 1417, 1891, 3148, 3619, 3962
BauI CACGAG 3 cut(s) 287, 1731, 3421
BbsI GAAGAC 6 cut(s) 5, 429, 596, 840, 1134, 4023
Bbv12I GWGCWC 8 cut(s) 297, 564, 757, 1417, 1629, 1891, 2476, 3148
BbvI GCAGC 6 cut(s) 1285, 1828, 2349, 2386, 2948, 3589
BccI CCATC 7 cut(s) 82, 547, 1634, 1765, 1853, 3047, 3988
BceAI ACGGC 3 cut(s) 1996, 2235, 3494
BciT130I CCWGG 6 cut(s) 126, 151, 388, 1071, 1993, 3952
BciVI GTATCC 1 cut(s) 1104
BclI TGATCA 1 cut(s) 1666
BcoDI GTCTC 9 cut(s) 288, 668, 1752, 2132, 2438, 2647, 3256, 3851, 4118
BfmI CTRYAG 3 cut(s) 116, 273, 1180
BfoI RGCGCY 1 cut(s) 400
BfrI CTTAAG 1 cut(s) 3689
BfuI GTATCC 1 cut(s) 1104
BglII AGATCT 3 cut(s) 2003, 2903, 3310
BisI GCNGC 7 cut(s) 1299, 1842, 2363, 2400, 2962, 3603, 4086
BlnI CCTAGG 1 cut(s) 3034
BlpI GCTNAGC 1 cut(s) 4101
BlsI GCNGC 7 cut(s) 1300, 1843, 2364, 2401, 2963, 3604, 4087
BmcAI AGTACT 1 cut(s) 1833
Bme1390I CCNGG 6 cut(s) 126, 151, 388, 1071, 1993, 3952
Bme18I GGWCC 1 cut(s) 1439
BmeT110I CYCGRG 3 cut(s) 3129, 3249, 3449
BmgT120I GGNCC 1 cut(s) 1439
BmiI GGNNCC 3 cut(s) 123, 2287, 3032
BmrFI CCNGG 6 cut(s) 126, 151, 388, 1071, 1993, 3952
BmtI GCTAGC 1 cut(s) 311
BoxI GACNNNNGTC 1 cut(s) 2659
BpiI GAAGAC 6 cut(s) 5, 429, 596, 840, 1134, 4023
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 3 cut(s) 409, 578, 3647
Bpu10I CCTNAGC 2 cut(s) 2510, 3936
Bpu1102I GCTNAGC 1 cut(s) 4101
Bpu14I TTCGAA 1 cut(s) 3327
BpuEI CTTGAG 5 cut(s) 1436, 2032, 2156, 2327, 2432
BsaAI YACGTR 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 4014
BsaJI CCNNGG 7 cut(s) 149, 160, 1070, 2289, 3034, 3128, 3950
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 1938, 1968
Bsc4I CCNNNNNNNGG 7 cut(s) 150, 233, 1165, 1851, 1855, 2701, 3403
Bse1I ACTGG 3 cut(s) 224, 2305, 3088
Bse21I CCTNAGG 1 cut(s) 2696
Bse3DI GCAATG 3 cut(s) 657, 2372, 3759
BseBI CCWGG 6 cut(s) 126, 151, 388, 1071, 1993, 3952
BseDI CCNNGG 7 cut(s) 149, 160, 1070, 2289, 3034, 3128, 3950
BseLI CCNNNNNNNGG 7 cut(s) 150, 233, 1165, 1851, 1855, 2701, 3403
BseMI GCAATG 3 cut(s) 657, 2372, 3759
BseNI ACTGG 3 cut(s) 224, 2305, 3088
BseRI GAGGAG 5 cut(s) 305, 485, 686, 2867, 3156
BseSI GKGCMC 1 cut(s) 2476
BseXI GCAGC 6 cut(s) 1285, 1828, 2349, 2386, 2948, 3589
BseYI CCCAGC 1 cut(s) 2701
BsgI GTGCAG 3 cut(s) 210, 1729, 3583
Bsh1236I CGCG 1 cut(s) 993
BshFI GGCC 5 cut(s) 1449, 1991, 2222, 3353, 3509
BshNI GGYRCC 1 cut(s) 3030
BsiHKAI GWGCWC 8 cut(s) 297, 564, 757, 1417, 1629, 1891, 2476, 3148
BsiHKCI CYCGRG 3 cut(s) 3129, 3249, 3449
BsiWI CGTACG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 2259
BslI CCNNNNNNNGG 7 cut(s) 150, 233, 1165, 1851, 1855, 2701, 3403
BsmAI GTCTC 9 cut(s) 288, 668, 1752, 2132, 2438, 2647, 3256, 3851, 4118
BsmFI GGGAC 1 cut(s) 2259
BsmI GAATGC 4 cut(s) 587, 1558, 3020, 3260
BsnI GGCC 5 cut(s) 1449, 1991, 2222, 3353, 3509
BsoBI CYCGRG 3 cut(s) 3129, 3249, 3449
Bsp119I TTCGAA 1 cut(s) 3327
Bsp1407I TGTACA 1 cut(s) 2456
Bsp1720I GCTNAGC 1 cut(s) 4101
Bsp19I CCATGG 2 cut(s) 160, 2289
Bsp68I TCGCGA 1 cut(s) 993
BspACI CCGC 4 cut(s) 779, 2441, 3028, 4085
BspANI GGCC 5 cut(s) 1449, 1991, 2222, 3353, 3509
BspFNI CGCG 1 cut(s) 993
BspHI TCATGA 1 cut(s) 1585
BspLI GGNNCC 3 cut(s) 123, 2287, 3032
BspMAI CTGCAG 1 cut(s) 277
BspOI GCTAGC 1 cut(s) 311
BspPI GGATC 7 cut(s) 483, 1333, 1605, 2280, 2293, 2988, 3046
BspT104I TTCGAA 1 cut(s) 3327
BspT107I GGYRCC 1 cut(s) 3030
BspTI CTTAAG 1 cut(s) 3689
BsrDI GCAATG 3 cut(s) 657, 2372, 3759
BsrGI TGTACA 1 cut(s) 2456
BsrI ACTGG 3 cut(s) 224, 2305, 3088
BssECI CCNNGG 7 cut(s) 149, 160, 1070, 2289, 3034, 3128, 3950
BssNAI GTATAC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 4014
BssSI CACGAG 3 cut(s) 287, 1731, 3421
BssT1I CCWWGG 3 cut(s) 160, 2289, 3034
Bst1107I GTATAC 1 cut(s) 106
Bst2BI CACGAG 3 cut(s) 287, 1731, 3421
Bst2UI CCWGG 6 cut(s) 126, 151, 388, 1071, 1993, 3952
Bst4CI ACNGT 8 cut(s) 11, 1495, 2143, 2156, 2626, 3049, 3063, 4049
Bst6I CTCTTC 2 cut(s) 3183, 3329
BstACI GRCGYC 1 cut(s) 4014
BstAFI CTTAAG 1 cut(s) 3689
BstAPI GCANNNNNTGC 3 cut(s) 492, 3015, 3758
BstAUI TGTACA 1 cut(s) 2456
BstBAI YACGTR 1 cut(s) 483
BstBI TTCGAA 1 cut(s) 3327
BstDSI CCRYGG 2 cut(s) 160, 2289
BstEII GGTNACC 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 993
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 2 cut(s) 399, 798
BstMAI GTCTC 9 cut(s) 288, 668, 1752, 2132, 2438, 2647, 3256, 3851, 4118
BstNI CCWGG 6 cut(s) 126, 151, 388, 1071, 1993, 3952
BstNSI RCATGY 3 cut(s) 1940, 3765, 3843
BstPAI GACNNNNGTC 1 cut(s) 2659
BstPI GGTNACC 1 cut(s) 222
BstSCI CCNGG 6 cut(s) 124, 149, 386, 1069, 1991, 3950
BstSFI CTRYAG 3 cut(s) 116, 273, 1180
BstSLI GKGCMC 1 cut(s) 2476
BstUI CGCG 1 cut(s) 993
BstV1I GCAGC 6 cut(s) 1285, 1828, 2349, 2386, 2948, 3589
BstV2I GAAGAC 6 cut(s) 5, 429, 596, 840, 1134, 4023
BstX2I RGATCY 6 cut(s) 1338, 2003, 2285, 2903, 3038, 3310
BstXI CCANNNNNNTGG 1 cut(s) 3361
BstYI RGATCY 6 cut(s) 1338, 2003, 2285, 2903, 3038, 3310
BstZ17I GTATAC 1 cut(s) 106
Bsu36I CCTNAGG 1 cut(s) 2696
BsuI GTATCC 1 cut(s) 1104
BsuRI GGCC 5 cut(s) 1449, 1991, 2222, 3353, 3509
BtgI CCRYGG 2 cut(s) 160, 2289
BtgZI GCGATG 1 cut(s) 974
BtsI GCAGTG 5 cut(s) 2861, 3155, 3339, 3571, 3581
BtsIMutI CAGTG 8 cut(s) 1533, 1712, 2298, 2861, 3155, 3339, 3571, 3581
BtuMI TCGCGA 1 cut(s) 993
CaiI CAGNNNCTG 2 cut(s) 197, 2896
CciI TCATGA 1 cut(s) 1585
CfoI GCGC 2 cut(s) 399, 798
Cfr13I GGNCC 1 cut(s) 1439
CseI GACGC 2 cut(s) 100, 4022
Csp6I GTAC 7 cut(s) 465, 480, 1177, 1528, 1832, 2270, 2457
CviQI GTAC 7 cut(s) 465, 480, 1177, 1528, 1832, 2270, 2457
DraI TTTAAA 2 cut(s) 3348, 3495
DraIII CACNNNGTG 1 cut(s) 2480
EaeI YGGCCR 2 cut(s) 2220, 3507
Eam1104I CTCTTC 2 cut(s) 3183, 3329
EarI CTCTTC 2 cut(s) 3183, 3329
Ecl136II GAGCTC 4 cut(s) 295, 1415, 1889, 3146
Eco130I CCWWGG 3 cut(s) 160, 2289, 3034
Eco24I GRGCYC 7 cut(s) 252, 297, 1417, 1891, 3148, 3619, 3962
Eco47I GGWCC 1 cut(s) 1439
Eco53kI GAGCTC 4 cut(s) 295, 1415, 1889, 3146
Eco57I CTGAAG 4 cut(s) 2595, 2814, 3546, 3578
Eco81I CCTNAGG 1 cut(s) 2696
Eco88I CYCGRG 3 cut(s) 3129, 3249, 3449
Eco91I GGTNACC 1 cut(s) 222
EcoICRI GAGCTC 4 cut(s) 295, 1415, 1889, 3146
EcoNI CCTNNNNNAGG 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 1439
EcoO65I GGTNACC 1 cut(s) 222
EcoRI GAATTC 2 cut(s) 2545, 2857
EcoRII CCWGG 6 cut(s) 124, 149, 386, 1069, 1991, 3950
EcoT14I CCWWGG 3 cut(s) 160, 2289, 3034
EcoT22I ATGCAT 2 cut(s) 1280, 2831
EcoT38I GRGCYC 7 cut(s) 252, 297, 1417, 1891, 3148, 3619, 3962
ErhI CCWWGG 3 cut(s) 160, 2289, 3034
FalI AAGNNNNNCTT 8 cut(s) 1001, 1033, 1557, 1589, 2568, 2600, 3251, 3283
FaqI GGGAC 1 cut(s) 2259
FauNDI CATATG 2 cut(s) 3070, 3725
FbaI TGATCA 1 cut(s) 1666
FblI GTMKAC 2 cut(s) 105, 535
Fnu4HI GCNGC 7 cut(s) 1299, 1842, 2363, 2400, 2962, 3603, 4086
FriOI GRGCYC 7 cut(s) 252, 297, 1417, 1891, 3148, 3619, 3962
Fsp4HI GCNGC 7 cut(s) 1299, 1842, 2363, 2400, 2962, 3603, 4086
GlaI GCGC 2 cut(s) 398, 797
GluI GCNGC 7 cut(s) 1299, 1842, 2363, 2400, 2962, 3603, 4086
GsaI CCCAGC 1 cut(s) 2705
GsuI CTGGAG 3 cut(s) 409, 578, 3647
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 5 cut(s) 1449, 1991, 2222, 3353, 3509
HgaI GACGC 2 cut(s) 100, 4022
HhaI GCGC 2 cut(s) 399, 798
Hin1I GRCGYC 1 cut(s) 4014
Hin6I GCGC 2 cut(s) 397, 796
HinP1I GCGC 2 cut(s) 397, 796
HincII GTYRAC 2 cut(s) 536, 1498
HindII GTYRAC 2 cut(s) 536, 1498
HindIII AAGCTT 1 cut(s) 1514
HphI GGTGA 8 cut(s) 133, 330, 409, 680, 2161, 2240, 3668, 3924
HpyCH4III ACNGT 8 cut(s) 11, 1495, 2143, 2156, 2626, 3049, 3063, 4049
HpyCH4IV ACGT 3 cut(s) 482, 571, 3808
HpySE526I ACGT 3 cut(s) 482, 571, 3808
Hsp92I GRCGYC 1 cut(s) 4014
HspAI GCGC 2 cut(s) 397, 796
Ksp22I TGATCA 1 cut(s) 1666
Lsp1109I GCAGC 6 cut(s) 1285, 1828, 2349, 2386, 2948, 3589
MaeII ACGT 3 cut(s) 482, 571, 3808
MfeI CAATTG 1 cut(s) 1302
MflI RGATCY 6 cut(s) 1338, 2003, 2285, 2903, 3038, 3310
MlyI GAGTC 3 cut(s) 591, 2102, 2508
MmeI TCCRAC 3 cut(s) 1146, 2016, 3499
Mph1103I ATGCAT 2 cut(s) 1280, 2831
MroXI GAANNNNTTC 4 cut(s) 1569, 2580, 2805, 4073
MslI CAYNNNNRTG 6 cut(s) 550, 666, 1536, 1937, 2916, 3073
MspCI CTTAAG 1 cut(s) 3689
MspR9I CCNGG 6 cut(s) 126, 151, 388, 1071, 1993, 3952
MunI CAATTG 1 cut(s) 1302
Mva1269I GAATGC 4 cut(s) 587, 1558, 3020, 3260
MvaI CCWGG 6 cut(s) 126, 151, 388, 1071, 1993, 3952
MvnI CGCG 1 cut(s) 993
NcoI CCATGG 2 cut(s) 160, 2289
NdeI CATATG 2 cut(s) 3070, 3725
NheI GCTAGC 1 cut(s) 307
NlaIV GGNNCC 3 cut(s) 123, 2287, 3032
NmuCI GTSAC 5 cut(s) 58, 323, 1939, 2480, 3764
NruI TCGCGA 1 cut(s) 993
NsiI ATGCAT 2 cut(s) 1280, 2831
NspI RCATGY 3 cut(s) 1940, 3765, 3843
NspV TTCGAA 1 cut(s) 3327
PaeR7I CTCGAG 1 cut(s) 3449
PagI TCATGA 1 cut(s) 1585
PciI ACATGT 1 cut(s) 1936
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 4 cut(s) 587, 1558, 3020, 3260
PdmI GAANNNNTTC 4 cut(s) 1569, 2580, 2805, 4073
Pfl23II CGTACG 1 cut(s) 479
PflFI GACNNNGTC 1 cut(s) 600
PflMI CCANNNNNTGG 1 cut(s) 1851
PkrI GCNGC 7 cut(s) 1300, 1843, 2364, 2401, 2963, 3604, 4087
PleI GAGTC 3 cut(s) 591, 2101, 2507
PpsI GAGTC 3 cut(s) 591, 2101, 2507
Ppu21I YACGTR 1 cut(s) 483
PpuMI RGGWCCY 1 cut(s) 1439
PscI ACATGT 1 cut(s) 1936
PshAI GACNNNNGTC 1 cut(s) 2659
Psp124BI GAGCTC 4 cut(s) 297, 1417, 1891, 3148
Psp5II RGGWCCY 1 cut(s) 1439
Psp6I CCWGG 6 cut(s) 124, 149, 386, 1069, 1991, 3950
PspEI GGTNACC 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 2701
PspGI CCWGG 6 cut(s) 124, 149, 386, 1069, 1991, 3950
PspLI CGTACG 1 cut(s) 479
PspN4I GGNNCC 3 cut(s) 123, 2287, 3032
PspPI GGNCC 1 cut(s) 1439
PspPPI RGGWCCY 1 cut(s) 1439
PspXI VCTCGAGB 1 cut(s) 3449
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 197, 2896
PsuI RGATCY 6 cut(s) 1338, 2003, 2285, 2903, 3038, 3310
PsyI GACNNNGTC 1 cut(s) 600
RruI TCGCGA 1 cut(s) 993
RsaI GTAC 7 cut(s) 466, 481, 1178, 1529, 1833, 2271, 2458
RsaNI GTAC 7 cut(s) 465, 480, 1177, 1528, 1832, 2270, 2457
RseI CAYNNNNRTG 6 cut(s) 550, 666, 1536, 1937, 2916, 3073
SacI GAGCTC 4 cut(s) 297, 1417, 1891, 3148
SalI GTCGAC 1 cut(s) 534
SatI GCNGC 7 cut(s) 1299, 1842, 2363, 2400, 2962, 3603, 4086
Sau96I GGNCC 1 cut(s) 1439
ScaI AGTACT 1 cut(s) 1833
SchI GAGTC 3 cut(s) 591, 2102, 2508
ScrFI CCNGG 6 cut(s) 126, 151, 388, 1071, 1993, 3952
SfcI CTRYAG 3 cut(s) 116, 273, 1180
Sfr274I CTCGAG 1 cut(s) 3449
SfuI TTCGAA 1 cut(s) 3327
SinI GGWCC 1 cut(s) 1439
SlaI CTCGAG 1 cut(s) 3449
SmiMI CAYNNNNRTG 6 cut(s) 550, 666, 1536, 1937, 2916, 3073
SmlI CTYRAG 7 cut(s) 1451, 2047, 2135, 2342, 2411, 3449, 3689
SmoI CTYRAG 7 cut(s) 1451, 2047, 2135, 2342, 2411, 3449, 3689
SsiI CCGC 4 cut(s) 779, 2441, 3028, 4085
SspI AATATT 1 cut(s) 2787
SstI GAGCTC 4 cut(s) 297, 1417, 1891, 3148
StyD4I CCNGG 6 cut(s) 124, 149, 386, 1069, 1991, 3950
StyI CCWWGG 3 cut(s) 160, 2289, 3034
TaaI ACNGT 8 cut(s) 11, 1495, 2143, 2156, 2626, 3049, 3063, 4049
TaiI ACGT 3 cut(s) 485, 574, 3811
TaqI TCGA 7 cut(s) 535, 1350, 1411, 1739, 2096, 3327, 3450
TatI WGTACW 4 cut(s) 1176, 1831, 2269, 2456
TauI GCSGC 1 cut(s) 4088
TscAI CASTG 8 cut(s) 1540, 1712, 2305, 2868, 3162, 3346, 3571, 3581
TseFI GTSAC 5 cut(s) 58, 323, 1939, 2480, 3764
TseI GCWGC 6 cut(s) 1298, 1841, 2362, 2399, 2961, 3602
Tsp45I GTSAC 5 cut(s) 58, 323, 1939, 2480, 3764
TspGWI ACGGA 2 cut(s) 590, 3566
TspRI CASTG 8 cut(s) 1540, 1712, 2305, 2868, 3162, 3346, 3571, 3581
Tth111I GACNNNGTC 1 cut(s) 600
Van91I CCANNNNNTGG 1 cut(s) 1851
Vha464I CTTAAG 1 cut(s) 3689
VneI GTGCAC 1 cut(s) 2472
VpaK11BI GGWCC 1 cut(s) 1439
XagI CCTNNNNNAGG 1 cut(s) 148
XapI RAATTY 7 cut(s) 130, 1236, 1428, 1893, 2545, 2857, 3908
XbaI TCTAGA 2 cut(s) 1474, 2875
XceI RCATGY 3 cut(s) 1940, 3765, 3843
XcmI CCANNNNNNNNNTGG 1 cut(s) 2974
XhoI CTCGAG 1 cut(s) 3449
XmaJI CCTAGG 1 cut(s) 3034
XmiI GTMKAC 2 cut(s) 105, 535
XmnI GAANNNNTTC 4 cut(s) 1569, 2580, 2805, 4073
ZrmI AGTACT 1 cut(s) 1833
Zsp2I ATGCAT 2 cut(s) 1280, 2831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.