Rorug07G0043900

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004720
Physical Location & Seq
Reverse (-)
3202459 .. 3204387
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0043900.1

Sequence Viewer

Length: 1929 bp
ATGTTGAAGCTTTCCCGTCCGAACCGGACACTCTTCGCCAGAGCATTCGGTTCATCGTCGTCTTCTTCTTCTTCTTCTTCGCCGGCCGATTTCACCAGCACTATACTGAATTGCAGAAGCCCTACAGAAGCGTTTGAGCTCTTCAATTCGGCGTCGAAACAAGTCGGCGCAAGGAAGGATCTTCAGCTTCATTCAGCGATTACTCATGTGTTGGTCAGAGCCAAACTATATATTAAAGCCAGGTGCTTGATAAAAGACTTGATACTAGATCTTCAGAAGTCCTGCAAATCCCGCCGTGCCTGTGAATTGGTTTACAATGCACTTAGCCGTTTGGAGAGGTCTAGATTCTCTGCTCGGAATGTTTTTGGAGTTTTGATCATTGCGTTATCTGAGATGGGTCTTGTTGAAGAAGCTTTGCGGGTGTATGGCAGCATTGGGGTGCTGCCAGCAACACAGGCTTGTAATGCGCTCTTGGATGGGTTGGTGAAGACGGGTCGGATTGATTCGATGTGGGAGCTTTATAATGATATGGGCTCTCGTGGATTAAGACCTAGTTGTGTTACATATGGGGTGTTAATCGAGGGTTGTTGTAAGAAAGGCGATCTCGTGAATGCACGTAAGGTGTTCGATGAAATGCCTGAGAGAGGGATTGAAAGGACAGTTGTGGTGTATACATCTCTTATTCGTGGGCTGTGCAATGAGGGGAGGATGGTGGAAGCTGACAGCATTTTTCGGACGATGAGGAAAGATGGTGTGATACCAAATCTGTGGACTTACAATTGTCTGATGGATGGGTATTGCAAAGTGGCTGATGTCAAACAAGCCCTTGTGTTGTACTCGAACTTGCTAGGCGATGGCATGCGGCCGAATGTTGTCACGTTTGGTATTTTGATTGATGCATTTTGCAAAGTTGGCGAACTGATGGCTGCGAGGAGCGTTTTAGTGTGCATGGTTAAGTTTGGTGCTGCGCCTAATACGTTTGTGTACAATGGTTTGATTGACGGGCATTGTAAGGTAGAAGATGTTTCGGAAGCAATGGATTTGAAATTGGAGATGCAGAAGTATGGTGTTCTTCCGGATGTGTTCACTTACAGCATACTAATTAAAGGTCTATGTTCTGTTTATAGAGTGGAAGAAGCGTATCAGTTGTTGCAAAACATGAAGAAGGAGGGAGTTGCTGCAAATGCTGTTACGTACAATTCATTAATCGATGGGTATTGTAAAGATCGCAATATGGAGAAGGCTTTGGAGGTGTGTTCTGAAATGACCAAAATTGGTATAGAACCAAATGTCACCACCTTCTCTACTTTGATCGATGCTTATTGCAAGATGGGGAACATGGAAGCTGCTATGGGTTTGTACTCGGAAATGGTAGTTAAAGGCCTTCTGCCTGATATAGTAGCTTACACAGATTTGATTGATGGCCATTTTAAAACCGGGAACGTGAAAGAGGCTCATCGCCTGCATAAAGAGATGTTGGAAGCACGCCTCACGCCCAATGTTTTCACTCTTAGTTGCTTGGTAGACGGCCTTGGTAAAAATGGAAAGAGTTCTGATGCAATCAACCTCTTTTCGGAGAAAACCAAAGTCAGTTCCAATACAGATGAAACCAAGGAAATGGATGGCGACTTCTGTTCCCCAAATCATGTGACTTATACAGCTTTAATTCAGGGTCTGTCTGTAGACAGCCGGATTGTCGAGGCAACCAAGTTCTTTTTGGATATGAGAGTCAGTGGTTTGAGACCAGATGCATTCACTTACATTGTCATGTTAAAGGGCCACTTCCAAGTGAAGCATACGCTTGGCGTGATGATGCTGCATGCAGATATGATGAAGACGGGTATCATTCCCAGTATAGATATACGTCCGGTGTTATGTAGGGCTTACCAAGAAATTGGTGACCTAAAATCAGCAGCTAAGTTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0003712 GO:0003713 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0008214 GO:0008270 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031057 GO:0031063 GO:0031064 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031490 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032922 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034647 GO:0034648 GO:0034720 GO:0034721 GO:0035064 GO:0036211 GO:0042393 GO:0043086 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051090 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090311 GO:0097159 GO:0140030 GO:0140034 GO:0140096 GO:0140110 GO:1901363 GO:1901564 GO:1901725 GO:1901726 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990837 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID JmjC JmjN PHD PLU-1 zf-C5HC2

Protein Analysis

642

Amino Acids

71.05

Weight (kDa)

8.33

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 151 - 198 1.2e-14 PPR repeat family
PPR_long PF17177 169 - 306 3.2e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 173 - 224 5.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 180 - 212 1.5e-10 PPR repeat
PPR_2 PF13041 187 - 233 2e-13 PPR repeat family
PPR PF01535 187 - 217 3.7e-08 PPR repeat
PPR_3 PF13812 207 - 266 4.4e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 215 - 248 2e-07 PPR repeat
PPR_2 PF13041 220 - 268 5.4e-16 PPR repeat family
PPR PF01535 222 - 252 1.8e-07 PPR repeat
PPR_1 PF12854 251 - 278 1.7e-06 PPR repeat
PPR_2 PF13041 254 - 303 2.9e-14 PPR repeat family
PPR_1 PF12854 285 - 318 2e-08 PPR repeat
TPR_24 PF23276 311 - 417 7.5e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 321 - 352 1.1e-06 PPR repeat
PPR_2 PF13041 324 - 372 9.1e-18 PPR repeat family
PPR_3 PF13812 348 - 404 4.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 356 - 388 1.5e-10 PPR repeat
PPR_2 PF13041 376 - 408 7.5e-10 PPR repeat family
PPR_long PF17177 377 - 487 4e-12 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 383 - 443 2.1e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 391 - 423 4.6e-11 PPR repeat
PPR_2 PF13041 395 - 443 1e-18 PPR repeat family
PPR PF01535 397 - 427 1.1e-09 PPR repeat
PPR_1 PF12854 426 - 458 7.9e-11 PPR repeat
PPR PF01535 433 - 462 2.2e-08 PPR repeat
PPR_2 PF13041 435 - 475 9.5e-11 PPR repeat family
PPR_3 PF13812 454 - 513 2.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 460 - 492 3.5e-06 PPR repeat
PPR_2 PF13041 464 - 513 1.1e-12 PPR repeat family
PPR_1 PF12854 497 - 526 9.3e-06 PPR repeat
PPR_2 PF13041 547 - 594 2.3e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AccI GTMKAC 3 cut(s) 671, 1524, 1683
AccIII TCCGGA 1 cut(s) 1075
AciI CCGC 3 cut(s) 292, 418, 862
AclWI GGATC 1 cut(s) 186
AcoI YGGCCR 3 cut(s) 84, 863, 1423
AcuI CTGAAG 2 cut(s) 167, 257
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 4 cut(s) 836, 986, 1196, 1361
AfiI CCNNNNNNNGG 2 cut(s) 644, 1573
AgsI TTSAA 5 cut(s) 7, 145, 407, 653, 1045
AjnI CCWGG 1 cut(s) 239
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 1735
AlwI GGATC 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 1675
Aor13HI TCCGGA 1 cut(s) 1075
AoxI GGCC 6 cut(s) 84, 863, 1381, 1423, 1528, 1777
ApeKI GCWGC 8 cut(s) 429, 442, 926, 965, 1178, 1346, 1816, 1913
AseI ATTAAT 1 cut(s) 1205
Asp700I GAANNNNTTC 1 cut(s) 1549
AspLEI GCGC 3 cut(s) 170, 469, 970
AspS9I GGNCC 1 cut(s) 1777
AsuC2I CCSGG 1 cut(s) 1438
AsuHPI GGTGA 4 cut(s) 85, 496, 1285, 1910
BalI TGGCCA 1 cut(s) 1425
BanII GRGCYC 2 cut(s) 141, 536
BauI CACGAG 2 cut(s) 537, 605
BbsI GAAGAC 3 cut(s) 54, 494, 1841
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 8 cut(s) 429, 441, 913, 952, 1165, 1333, 1803, 1925
BceAI ACGGC 3 cut(s) 279, 312, 1543
BciT130I CCWGG 1 cut(s) 241
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 1 cut(s) 1438
BcoDI GTCTC 1 cut(s) 1735
BfaI CTAG 4 cut(s) 266, 342, 552, 848
BfmI CTRYAG 2 cut(s) 123, 1680
BglII AGATCT 1 cut(s) 268
BisI GCNGC 9 cut(s) 430, 443, 863, 927, 966, 1179, 1347, 1817, 1914
BlsI GCNGC 9 cut(s) 431, 444, 864, 928, 967, 1180, 1348, 1818, 1915
Bme1390I CCNGG 2 cut(s) 241, 1438
BmgT120I GGNCC 1 cut(s) 1777
BmrFI CCNGG 2 cut(s) 241, 1438
BmrI ACTGGG 1 cut(s) 1845
BmsI GCATC 6 cut(s) 886, 1044, 1306, 1546, 1738, 1803
BmuI ACTGGG 1 cut(s) 1845
BpiI GAAGAC 3 cut(s) 54, 494, 1841
BpuMI CCSGG 1 cut(s) 1438
Bsa29I ATCGAT 2 cut(s) 1209, 1314
BsaAI YACGTR 2 cut(s) 617, 1194
BsaHI GRCGYC 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 1735
BsaJI CCNNGG 2 cut(s) 1531, 1611
BsaWI WCCGGW 3 cut(s) 24, 1075, 1867
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 1573
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 1851
Bse3DI GCAATG 3 cut(s) 378, 703, 1041
BseAI TCCGGA 1 cut(s) 1075
BseBI CCWGG 1 cut(s) 241
BseCI ATCGAT 2 cut(s) 1209, 1314
BseDI CCNNGG 2 cut(s) 1531, 1611
BseGI GGATG 5 cut(s) 481, 714, 796, 1084, 1627
BseLI CCNNNNNNNGG 2 cut(s) 644, 1573
BseMI GCAATG 3 cut(s) 378, 703, 1041
BseMII CTCAG 2 cut(s) 381, 630
BseNI ACTGG 1 cut(s) 1851
BseRI GAGGAG 1 cut(s) 946
BseX3I CGGCCG 2 cut(s) 84, 863
BseXI GCAGC 8 cut(s) 429, 441, 913, 952, 1165, 1333, 1803, 1925
Bsh1285I CGRYCG 2 cut(s) 87, 866
BshFI GGCC 6 cut(s) 86, 865, 1383, 1425, 1530, 1779
BshVI ATCGAT 2 cut(s) 1209, 1314
BsiEI CGRYCG 2 cut(s) 87, 866
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 6 cut(s) 25, 83, 1076, 1437, 1690, 1868
BslI CCNNNNNNNGG 2 cut(s) 644, 1573
BsmAI GTCTC 1 cut(s) 1735
BsmI GAATGC 3 cut(s) 44, 616, 1751
BsnI GGCC 6 cut(s) 86, 865, 1383, 1425, 1530, 1779
Bso31I GGTCTC 1 cut(s) 1735
Bsp1286I GDGCHC 2 cut(s) 141, 536
Bsp13I TCCGGA 1 cut(s) 1075
Bsp1407I TGTACA 1 cut(s) 984
Bsp143I GATC 6 cut(s) 178, 268, 375, 601, 1225, 1311
BspACI CCGC 3 cut(s) 292, 418, 862
BspANI GGCC 6 cut(s) 86, 865, 1383, 1425, 1530, 1779
BspCNI CTCAG 2 cut(s) 382, 631
BspDI ATCGAT 2 cut(s) 1209, 1314
BspEI TCCGGA 1 cut(s) 1075
BspPI GGATC 1 cut(s) 186
BspQI GCTCTTC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 1735
BsrDI GCAATG 3 cut(s) 378, 703, 1041
BsrFI RCCGGY 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 984
BsrI ACTGG 1 cut(s) 1851
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 1531, 1611
BssMI GATC 6 cut(s) 178, 268, 375, 601, 1225, 1311
BssNAI GTATAC 1 cut(s) 672
BssNI GRCGYC 1 cut(s) 152
BssSI CACGAG 2 cut(s) 537, 605
BssT1I CCWWGG 2 cut(s) 1531, 1611
Bst1107I GTATAC 1 cut(s) 672
Bst2BI CACGAG 2 cut(s) 537, 605
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 2 cut(s) 38, 146
BstACI GRCGYC 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 984
BstBAI YACGTR 2 cut(s) 617, 1194
BstC8I GCNNGC 6 cut(s) 84, 447, 860, 1463, 1486, 1821
BstDEI CTNAG 5 cut(s) 323, 390, 639, 1511, 1917
BstEII GGTNACC 1 cut(s) 1898
BstENI CCTNNNNNAGG 1 cut(s) 642
BstF5I GGATG 5 cut(s) 481, 714, 796, 1084, 1627
BstHHI GCGC 3 cut(s) 170, 469, 970
BstKTI GATC 6 cut(s) 181, 271, 378, 604, 1228, 1314
BstMAI GTCTC 1 cut(s) 1735
BstMBI GATC 6 cut(s) 178, 268, 375, 601, 1225, 1311
BstMCI CGRYCG 2 cut(s) 87, 866
BstMWI GCNNNNNNNGC 5 cut(s) 291, 455, 464, 912, 1184
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 2 cut(s) 862, 1823
BstPI GGTNACC 1 cut(s) 1898
BstSCI CCNGG 2 cut(s) 239, 1436
BstSFI CTRYAG 2 cut(s) 123, 1680
BstSNI TACGTA 1 cut(s) 1194
BstV1I GCAGC 8 cut(s) 429, 441, 913, 952, 1165, 1333, 1803, 1925
BstV2I GAAGAC 3 cut(s) 54, 494, 1841
BstX2I RGATCY 2 cut(s) 178, 268
BstXI CCANNNNNNTGG 3 cut(s) 768, 1618, 1895
BstYI RGATCY 2 cut(s) 178, 268
BstZ17I GTATAC 1 cut(s) 672
BstZI CGGCCG 2 cut(s) 84, 863
Bsu15I ATCGAT 2 cut(s) 1209, 1314
BsuRI GGCC 6 cut(s) 86, 865, 1383, 1425, 1530, 1779
BsuTUI ATCGAT 2 cut(s) 1209, 1314
BtgZI GCGATG 2 cut(s) 867, 1442
BtsCI GGATG 5 cut(s) 481, 714, 796, 1084, 1627
BtsIMutI CAGTG 1 cut(s) 1738
Cac8I GCNNGC 6 cut(s) 84, 447, 860, 1463, 1486, 1821
CaiI CAGNNNCTG 1 cut(s) 1675
CfoI GCGC 3 cut(s) 170, 469, 970
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 1777
ClaI ATCGAT 2 cut(s) 1209, 1314
CseI GACGC 1 cut(s) 141
Csp6I GTAC 4 cut(s) 835, 985, 1195, 1360
CviAII CATG 8 cut(s) 206, 859, 949, 1159, 1339, 1646, 1768, 1820
CviQI GTAC 4 cut(s) 835, 985, 1195, 1360
DdeI CTNAG 5 cut(s) 323, 390, 639, 1511, 1917
DpnI GATC 6 cut(s) 180, 270, 377, 603, 1227, 1313
DpnII GATC 6 cut(s) 178, 268, 375, 601, 1225, 1311
DraI TTTAAA 1 cut(s) 1432
EaeI YGGCCR 3 cut(s) 84, 863, 1423
EagI CGGCCG 2 cut(s) 84, 863
Eam1104I CTCTTC 2 cut(s) 38, 146
EarI CTCTTC 2 cut(s) 38, 146
Ecl136II GAGCTC 1 cut(s) 139
EclXI CGGCCG 2 cut(s) 84, 863
Eco105I TACGTA 1 cut(s) 1194
Eco130I CCWWGG 2 cut(s) 1531, 1611
Eco147I AGGCCT 1 cut(s) 1383
Eco24I GRGCYC 2 cut(s) 141, 536
Eco31I GGTCTC 1 cut(s) 1735
Eco52I CGGCCG 2 cut(s) 84, 863
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 2 cut(s) 167, 257
Eco91I GGTNACC 1 cut(s) 1898
EcoICRI GAGCTC 1 cut(s) 139
EcoNI CCTNNNNNAGG 1 cut(s) 642
EcoO65I GGTNACC 1 cut(s) 1898
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 2 cut(s) 1531, 1611
EcoT22I ATGCAT 2 cut(s) 901, 1753
EcoT38I GRGCYC 2 cut(s) 141, 536
ErhI CCWWGG 2 cut(s) 1531, 1611
FaeI CATG 8 cut(s) 209, 862, 952, 1162, 1342, 1649, 1771, 1823
FalI AAGNNNNNCTT 2 cut(s) 1766, 1798
FatI CATG 8 cut(s) 205, 858, 948, 1158, 1338, 1645, 1767, 1819
FauI CCCGC 2 cut(s) 299, 411
FauNDI CATATG 1 cut(s) 565
FbaI TGATCA 1 cut(s) 375
FblI GTMKAC 3 cut(s) 671, 1524, 1683
Fnu4HI GCNGC 9 cut(s) 430, 443, 863, 927, 966, 1179, 1347, 1817, 1914
FokI GGATG 5 cut(s) 488, 721, 803, 1091, 1634
FriOI GRGCYC 2 cut(s) 141, 536
Fsp4HI GCNGC 9 cut(s) 430, 443, 863, 927, 966, 1179, 1347, 1817, 1914
FspBI CTAG 4 cut(s) 266, 342, 552, 848
GlaI GCGC 3 cut(s) 169, 468, 969
GluI GCNGC 9 cut(s) 430, 443, 863, 927, 966, 1179, 1347, 1817, 1914
HaeIII GGCC 6 cut(s) 86, 865, 1383, 1425, 1530, 1779
HapII CCGG 6 cut(s) 25, 83, 1076, 1437, 1690, 1868
HgaI GACGC 1 cut(s) 141
HhaI GCGC 3 cut(s) 170, 469, 970
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 8 cut(s) 209, 862, 952, 1162, 1342, 1649, 1771, 1823
Hin6I GCGC 3 cut(s) 168, 467, 968
HinP1I GCGC 3 cut(s) 168, 467, 968
HindIII AAGCTT 2 cut(s) 8, 411
HinfI GANTC 3 cut(s) 345, 503, 1728
HpaII CCGG 6 cut(s) 25, 83, 1076, 1437, 1690, 1868
HphI GGTGA 4 cut(s) 85, 496, 1285, 1910
Hpy166II GTNNAC 7 cut(s) 313, 672, 771, 985, 1086, 1525, 1684
Hpy188III TCNNGA 3 cut(s) 342, 607, 1076
Hpy8I GTNNAC 7 cut(s) 313, 672, 771, 985, 1086, 1525, 1684
Hpy99I CGWCG 2 cut(s) 61, 157
HpyAV CCTTC 5 cut(s) 169, 1159, 1234, 1309, 1394
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4IV ACGT 6 cut(s) 616, 878, 977, 1193, 1443, 1864
HpyF10VI GCNNNNNNNGC 5 cut(s) 291, 455, 464, 912, 1184
HpyF3I CTNAG 5 cut(s) 323, 390, 639, 1511, 1917
HpySE526I ACGT 6 cut(s) 616, 878, 977, 1193, 1443, 1864
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 8 cut(s) 209, 862, 952, 1162, 1342, 1649, 1771, 1823
HspAI GCGC 3 cut(s) 168, 467, 968
Kpn2I TCCGGA 1 cut(s) 1075
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 6 cut(s) 178, 268, 375, 601, 1225, 1311
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 2 cut(s) 514, 933
Lsp1109I GCAGC 8 cut(s) 429, 441, 913, 952, 1165, 1333, 1803, 1925
LweI GCATC 6 cut(s) 886, 1044, 1306, 1546, 1738, 1803
MaeI CTAG 4 cut(s) 266, 342, 552, 848
MaeII ACGT 6 cut(s) 616, 878, 977, 1193, 1443, 1864
MaeIII GTNAC 6 cut(s) 559, 874, 1189, 1291, 1648, 1898
MalI GATC 6 cut(s) 180, 270, 377, 603, 1227, 1313
MboI GATC 6 cut(s) 178, 268, 375, 601, 1225, 1311
MfeI CAATTG 1 cut(s) 778
MflI RGATCY 2 cut(s) 178, 268
MhlI GDGCHC 2 cut(s) 141, 536
MlsI TGGCCA 1 cut(s) 1425
MluNI TGGCCA 1 cut(s) 1425
MlyI GAGTC 1 cut(s) 1737
MmeI TCCRAC 2 cut(s) 476, 1458
Mox20I TGGCCA 1 cut(s) 1425
Mph1103I ATGCAT 2 cut(s) 901, 1753
MroI TCCGGA 1 cut(s) 1075
MroNI GCCGGC 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 1549
MscI TGGCCA 1 cut(s) 1425
MslI CAYNNNNRTG 2 cut(s) 437, 1766
Msp20I TGGCCA 1 cut(s) 1425
MspI CCGG 6 cut(s) 25, 83, 1076, 1437, 1690, 1868
MspR9I CCNGG 2 cut(s) 241, 1438
MunI CAATTG 1 cut(s) 778
Mva1269I GAATGC 3 cut(s) 44, 616, 1751
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 5 cut(s) 291, 455, 464, 912, 1184
NaeI GCCGGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 1438
NdeI CATATG 1 cut(s) 565
NdeII GATC 6 cut(s) 178, 268, 375, 601, 1225, 1311
NgoMIV GCCGGC 1 cut(s) 82
NlaIII CATG 8 cut(s) 209, 862, 952, 1162, 1342, 1649, 1771, 1823
NmuCI GTSAC 4 cut(s) 874, 1291, 1648, 1898
NsiI ATGCAT 2 cut(s) 901, 1753
NspI RCATGY 2 cut(s) 862, 1823
PaeI GCATGC 2 cut(s) 862, 1823
PceI AGGCCT 1 cut(s) 1383
PciSI GCTCTTC 1 cut(s) 146
PctI GAATGC 3 cut(s) 44, 616, 1751
PdiI GCCGGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 1549
PfeI GAWTC 2 cut(s) 345, 503
PkrI GCNGC 9 cut(s) 431, 444, 864, 928, 967, 1180, 1348, 1818, 1915
PleI GAGTC 1 cut(s) 1736
PpsI GAGTC 1 cut(s) 1736
Ppu21I YACGTR 2 cut(s) 617, 1194
PshBI ATTAAT 1 cut(s) 1205
PsiI TTATAA 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 239
PspEI GGTNACC 1 cut(s) 1898
PspGI CCWGG 1 cut(s) 239
PspPI GGNCC 1 cut(s) 1777
PstNI CAGNNNCTG 1 cut(s) 1675
PsuI RGATCY 2 cut(s) 178, 268
RsaI GTAC 4 cut(s) 836, 986, 1196, 1361
RsaNI GTAC 4 cut(s) 835, 985, 1195, 1360
RseI CAYNNNNRTG 2 cut(s) 437, 1766
SacI GAGCTC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 9 cut(s) 430, 443, 863, 927, 966, 1179, 1347, 1817, 1914
Sau3AI GATC 6 cut(s) 178, 268, 375, 601, 1225, 1311
Sau96I GGNCC 1 cut(s) 1777
SchI GAGTC 1 cut(s) 1737
ScrFI CCNGG 2 cut(s) 241, 1438
SduI GDGCHC 2 cut(s) 141, 536
SfaNI GCATC 6 cut(s) 886, 1044, 1306, 1546, 1738, 1803
SfcI CTRYAG 2 cut(s) 123, 1680
SmiMI CAYNNNNRTG 2 cut(s) 437, 1766
SnaBI TACGTA 1 cut(s) 1194
SphI GCATGC 2 cut(s) 862, 1823
SseBI AGGCCT 1 cut(s) 1383
SsiI CCGC 3 cut(s) 292, 418, 862
SspMI CTAG 4 cut(s) 266, 342, 552, 848
SstI GAGCTC 1 cut(s) 141
StuI AGGCCT 1 cut(s) 1383
StyD4I CCNGG 2 cut(s) 239, 1436
StyI CCWWGG 2 cut(s) 1531, 1611
TaaI ACNGT 1 cut(s) 661
TaiI ACGT 6 cut(s) 619, 881, 980, 1196, 1446, 1867
TaqI TCGA 8 cut(s) 155, 506, 579, 627, 839, 1209, 1314, 1698
TatI WGTACW 3 cut(s) 834, 984, 1359
TauI GCSGC 1 cut(s) 865
TfiI GAWTC 2 cut(s) 345, 503
TscAI CASTG 1 cut(s) 1738
TseFI GTSAC 4 cut(s) 874, 1291, 1648, 1898
TseI GCWGC 8 cut(s) 429, 442, 926, 965, 1178, 1346, 1816, 1913
Tsp45I GTSAC 4 cut(s) 874, 1291, 1648, 1898
TspDTI ATGAA 7 cut(s) 42, 179, 645, 1175, 1191, 1620, 1847
TspRI CASTG 1 cut(s) 1738
VspI ATTAAT 1 cut(s) 1205
XagI CCTNNNNNAGG 1 cut(s) 642
XbaI TCTAGA 1 cut(s) 341
XceI RCATGY 2 cut(s) 862, 1823
XcmI CCANNNNNNNNNTGG 1 cut(s) 1714
XmiI GTMKAC 3 cut(s) 671, 1524, 1683
XmnI GAANNNNTTC 1 cut(s) 1549
XspI CTAG 4 cut(s) 266, 342, 552, 848
Zsp2I ATGCAT 2 cut(s) 901, 1753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.