Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005854

Physical Location & Seq

Genomic Coordinates Reverse (-)

24096290 .. 24097733

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGACAAGTCTTTAACAAGCTCCGAGGTAAAGAGTGGAGACATAAGCAGGTACAAGCGATATGTGATCGTGTTTTCGATCGGTTCAAGATGCAAACCGGAAGAGCCAATCTTACGTTTGAAGAGTTATACATCGCTGTTCTTCTCGTTTACAATGACATAAACAAGAGATTGCCTGGTCCTCATTTCGATCCACCTTCTAAGGATCTAGTCAATAGCATTATGACGGACTGTGATATCAACTTGGATGGAGAACTTGATAGGGAAGAGTTTGTGAAGTTTATTGAGCAGATTACGGCTGAGACGTTTAACGTGGTTAGTCAGGGTTTGATCATAGCTTTGATTGTTGCTCCCACTGTGGCTATTGCGACGAAGAAGGCCACGGAAGGTGTCCCTGGAGTTGGCAAAGTTGTGCAGAAGCTGCCTACTTCAATCTATGCTTCTCTTGTGACTCTTGCAGTTATGTGGGTGAATTCTGATTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.1

Weight (kDa)

6.12

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64850
fragaria_vesca	FvH4_7g07320
malus_domestica	MD02G1236300.v1.1 MD07G1078400.v1.1
prunus_persica	Prupe.2G101300_v2.0.a1
pyrus_communis	pycom02g20330 pycom02g20340 pycom03g02200 pycom07g06230 pycom11g02620
rosa_chinensis	RchiOBHm_Chr1g0340081 RchiOBHm_Chr5g0033761
rosa_laevigata	RLG00000029259
rosa_multiflora	Rmu_sc0001215.1_g000002
rosa_roxburghii	Rroxscaffold_2G00097610 Rroxscaffold_3G00237600 Rroxscaffold_4G00312810 Rroxscaffold_4G00313970
rosa_rugosa	Rorug01G0136100.1 Rorug01G0137100.1
rosa_samantha	Rh1AG156600 Rh1BG125000 Rh1CG146200 Rh1DG086800 Rh4BG205300 Rh4BG413000 Rh4DG287800
rosa_wichuraiana	Rw1G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	40
AclWI	GGATC	2 cut(s)	185, 213
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	4 cut(s)	88, 122, 432, 483
AjnI	CCWGG	2 cut(s)	175, 394
AluBI	AGCT	3 cut(s)	22, 338, 421
AluI	AGCT	3 cut(s)	22, 338, 421
Alw26I	GTCTC	2 cut(s)	34, 296
AlwI	GGATC	2 cut(s)	185, 213
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	1 cut(s)	472
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	2 cut(s)	177, 396
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	34, 296
BfaI	CTAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	2 cut(s)	177, 396
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	2 cut(s)	177, 396
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	417
BsaJI	CCNNGG	3 cut(s)	25, 381, 394
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	177, 396
BseDI	CCNNGG	3 cut(s)	25, 381, 394
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	434
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	18, 377
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	2 cut(s)	34, 296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	18, 377
BsnI	GGCC	1 cut(s)	380
Bsp143I	GATC	5 cut(s)	67, 79, 190, 205, 330
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	2 cut(s)	185, 213
BspQI	GCTCTTC	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	25, 381, 394
BssMI	GATC	5 cut(s)	67, 79, 190, 205, 330
Bst2UI	CCWGG	2 cut(s)	177, 396
Bst4CI	ACNGT	2 cut(s)	233, 358
Bst6I	CTCTTC	3 cut(s)	97, 117, 261
BstAPI	GCANNNNNTGC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	201, 300
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	5 cut(s)	70, 82, 193, 208, 333
BstMAI	GTCTC	2 cut(s)	34, 296
BstMBI	GATC	5 cut(s)	67, 79, 190, 205, 330
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNI	CCWGG	2 cut(s)	177, 396
BstSCI	CCNGG	2 cut(s)	175, 394
BstV1I	GCAGC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	53
CviJI	RGCY	7 cut(s)	22, 107, 299, 338, 362, 380, 421
CviKI_1	RGCY	7 cut(s)	22, 107, 299, 338, 362, 380, 421
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	2 cut(s)	201, 300
DpnI	GATC	5 cut(s)	69, 81, 192, 207, 332
DpnII	GATC	5 cut(s)	67, 79, 190, 205, 330
Eam1104I	CTCTTC	3 cut(s)	97, 117, 261
EarI	CTCTTC	3 cut(s)	97, 117, 261
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	175, 394
EcoRV	GATATC	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	296
FaiI	YATR	8 cut(s)	45, 64, 130, 161, 224, 335, 438, 464
FaqI	GGGAC	2 cut(s)	18, 377
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	99
HinfI	GANTC	2 cut(s)	451, 479
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	26, 478
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	3 cut(s)	207, 370, 380
HpyCH4III	ACNGT	2 cut(s)	233, 358
HpyCH4IV	ACGT	3 cut(s)	116, 305, 312
HpyCH4V	TGCA	3 cut(s)	94, 415, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	2 cut(s)	201, 300
HpySE526I	ACGT	3 cut(s)	116, 305, 312
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	5 cut(s)	67, 79, 190, 205, 330
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	27, 355
LpnPI	CCDG	7 cut(s)	35, 112, 162, 189, 308, 381, 408
Lsp1109I	GCAGC	1 cut(s)	408
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	3 cut(s)	116, 305, 312
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	5 cut(s)	69, 81, 192, 207, 332
MboI	GATC	5 cut(s)	67, 79, 190, 205, 330
MboII	GAAGA	5 cut(s)	114, 134, 134, 278, 385
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	2 cut(s)	20, 192
MseI	TTAA	3 cut(s)	15, 309, 487
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	177, 396
MvaI	CCWGG	2 cut(s)	177, 396
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeII	GATC	5 cut(s)	67, 79, 190, 205, 330
NmuCI	GTSAC	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	423
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	175, 394
PspGI	CCWGG	2 cut(s)	175, 394
PspPI	GGNCC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	205
PvuI	CGATCG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	15, 309, 487
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	5 cut(s)	67, 79, 190, 205, 330
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	177, 396
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	175, 394
TaaI	ACNGT	2 cut(s)	233, 358
TaiI	ACGT	3 cut(s)	119, 308, 315
TaqI	TCGA	2 cut(s)	78, 189
TasI	AATT	1 cut(s)	472
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	3 cut(s)	15, 309, 487
Tru9I	TTAA	3 cut(s)	15, 309, 487
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	448
TspGWI	ACGGA	2 cut(s)	242, 398
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	472
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.