Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005854

Physical Location & Seq

Genomic Coordinates Forward (+)

5516436 .. 5518644

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGACAGATCCTCGACAGATTACAAGGAAAGCAATGGAGGCGAAAGCAAATAAGGAGGATTACAGATAAGGTGTTTGATCATTTTAAAAATGAGACAGGAAGGGCTAGCTTGAATTTTGAAGATCTGTACATCGGTGTACTACTTGTGTACAATGATATCAACAAGCGTTTACCCGGCCCGCATTTTGATCGACCCTCCAAAGATCTAGTCAAAGCTATGATGCAGCAAAATGATCTCAATCTCGACGGAGAAATTGACCGGGAAGAGTTTGCGAAGTTCATGAAGCAGTTGACAGCAGAGACATTCGTTGTAGTCAGTCAGGGACTCATCCTCACACTGGTTGCAGCACCAGCGGTGGCAATGGCGACAAAAAGAGCTACCGAGGGCGTACCAGGGGTCGGAAAGGTCGTGCAAAGGTTACCCAATTCAGTTTATGCATCCCTTATAACTCTTACTGTCCTGTTGTTTCAGCAAGCGCGCCAGGAGTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.76

Weight (kDa)

9.43

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64850
fragaria_vesca	FvH4_7g07320
malus_domestica	MD02G1236300.v1.1 MD07G1078400.v1.1
prunus_persica	Prupe.2G101300_v2.0.a1
pyrus_communis	pycom02g20330 pycom02g20340 pycom03g02200 pycom07g06230 pycom11g02620
rosa_chinensis	RchiOBHm_Chr1g0340081 RchiOBHm_Chr5g0033761
rosa_laevigata	RLG00000029259
rosa_multiflora	Rmu_sc0001215.1_g000002
rosa_roxburghii	Rroxscaffold_2G00097610 Rroxscaffold_3G00237600 Rroxscaffold_4G00312810 Rroxscaffold_4G00313970
rosa_rugosa	Rorug01G0136100.1 Rorug01G0137100.1
rosa_samantha	Rh1AG156600 Rh1BG125000 Rh1CG146200 Rh1DG086800 Rh4BG205300 Rh4BG413000 Rh4DG287800
rosa_wichuraiana	Rw1G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	449
AccII	CGCG	1 cut(s)	481
AciI	CCGC	2 cut(s)	182, 356
AclWI	GGATC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	4 cut(s)	131, 141, 152, 393
AfiI	CCNNNNNNNGG	2 cut(s)	340, 401
AgsI	TTSAA	2 cut(s)	115, 122
AjnI	CCWGG	2 cut(s)	394, 483
AluBI	AGCT	3 cut(s)	111, 218, 380
AluI	AGCT	3 cut(s)	111, 218, 380
Alw26I	GTCTC	2 cut(s)	89, 296
AlwI	GGATC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	226, 347
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AspLEI	GCGC	2 cut(s)	481, 483
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	2 cut(s)	177, 263
AsuNHI	GCTAGC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	238, 359
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	2 cut(s)	396, 485
BclI	TGATCA	1 cut(s)	79
BcnI	CCSGG	2 cut(s)	177, 263
BcoDI	GTCTC	2 cut(s)	89, 296
BfaI	CTAG	2 cut(s)	108, 209
BglII	AGATCT	2 cut(s)	124, 205
BisI	GCNGC	2 cut(s)	227, 348
BlsI	GCNGC	2 cut(s)	228, 349
Bme1390I	CCNGG	4 cut(s)	177, 263, 396, 485
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	4 cut(s)	177, 263, 396, 485
BmsI	GCATC	2 cut(s)	213, 449
BmtI	GCTAGC	1 cut(s)	111
BpuMI	CCSGG	2 cut(s)	177, 263
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	384, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 401
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	2 cut(s)	41, 369
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	396, 485
BseDI	CCNNGG	2 cut(s)	384, 395
BseGI	GGATG	2 cut(s)	330, 440
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	340, 401
BseMI	GCAATG	2 cut(s)	41, 369
BseNI	ACTGG	1 cut(s)	345
BsePI	GCGCGC	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	238, 359
Bsh1236I	CGCG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	177, 262
BslFI	GGGAC	2 cut(s)	18, 339
BslI	CCNNNNNNNGG	2 cut(s)	340, 401
BsmAI	GTCTC	2 cut(s)	89, 296
BsmFI	GGGAC	2 cut(s)	18, 339
BsnI	GGCC	1 cut(s)	180
Bsp1407I	TGTACA	2 cut(s)	129, 150
Bsp143I	GATC	6 cut(s)	9, 79, 124, 190, 205, 235
BspACI	CCGC	2 cut(s)	182, 356
BspANI	GGCC	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	481
BspHI	TCATGA	1 cut(s)	282
BspOI	GCTAGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	41, 369
BsrGI	TGTACA	2 cut(s)	129, 150
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	384, 395
BssHII	GCGCGC	1 cut(s)	479
BssMI	GATC	6 cut(s)	9, 79, 124, 190, 205, 235
Bst2UI	CCWGG	2 cut(s)	396, 485
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	261
BstAUI	TGTACA	2 cut(s)	129, 150
BstC8I	GCNNGC	4 cut(s)	109, 182, 477, 481
BstEII	GGTNACC	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	330, 440
BstFNI	CGCG	1 cut(s)	481
BstHHI	GCGC	2 cut(s)	481, 483
BstKTI	GATC	6 cut(s)	12, 82, 127, 193, 208, 238
BstMAI	GTCTC	2 cut(s)	89, 296
BstMBI	GATC	6 cut(s)	9, 79, 124, 190, 205, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 353
BstNI	CCWGG	2 cut(s)	396, 485
BstPI	GGTNACC	1 cut(s)	420
BstSCI	CCNGG	4 cut(s)	175, 261, 394, 483
BstUI	CGCG	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	238, 359
BstX2I	RGATCY	3 cut(s)	9, 124, 205
BstYI	RGATCY	3 cut(s)	9, 124, 205
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	330, 440
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	4 cut(s)	109, 182, 477, 481
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	2 cut(s)	481, 483
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	4 cut(s)	130, 140, 151, 392
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	5 cut(s)	107, 111, 180, 218, 380
CviKI_1	RGCY	5 cut(s)	107, 111, 180, 218, 380
CviQI	GTAC	4 cut(s)	130, 140, 151, 392
DpnI	GATC	6 cut(s)	11, 81, 126, 192, 207, 237
DpnII	GATC	6 cut(s)	9, 79, 124, 190, 205, 235
DraI	TTTAAA	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	420
EcoO65I	GGTNACC	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	394, 483
EcoRV	GATATC	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	1 cut(s)	286
FaiI	YATR	4 cut(s)	221, 284, 438, 449
FaqI	GGGAC	2 cut(s)	18, 339
FatI	CATG	1 cut(s)	282
FauI	CCCGC	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	227, 348
FokI	GGATG	2 cut(s)	317, 427
Fsp4HI	GCNGC	2 cut(s)	227, 348
FspBI	CTAG	2 cut(s)	108, 209
GlaI	GCGC	2 cut(s)	480, 482
GluI	GCNGC	2 cut(s)	227, 348
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	177, 262
HhaI	GCGC	2 cut(s)	481, 483
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	2 cut(s)	479, 481
HinP1I	GCGC	2 cut(s)	479, 481
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	177, 262
Hpy166II	GTNNAC	4 cut(s)	140, 151, 173, 294
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	2 cut(s)	245, 283
Hpy8I	GTNNAC	4 cut(s)	140, 151, 173, 294
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	226, 347, 415, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 353
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	2 cut(s)	479, 481
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	6 cut(s)	9, 79, 124, 190, 205, 235
Lsp1109I	GCAGC	2 cut(s)	238, 359
LweI	GCATC	2 cut(s)	213, 449
MaeI	CTAG	2 cut(s)	108, 209
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	6 cut(s)	11, 81, 126, 192, 207, 237
MboI	GATC	6 cut(s)	9, 79, 124, 190, 205, 235
MboII	GAAGA	2 cut(s)	134, 278
MflI	RGATCY	3 cut(s)	9, 124, 205
MluCI	AATT	3 cut(s)	115, 255, 427
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	6 cut(s)	23, 33, 51, 208, 344, 379
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	2 cut(s)	177, 262
MspR9I	CCNGG	4 cut(s)	177, 263, 396, 485
MvaI	CCWGG	2 cut(s)	396, 485
MvnI	CGCG	1 cut(s)	481
MwoI	GCNNNNNNNGC	2 cut(s)	40, 353
NciI	CCSGG	2 cut(s)	177, 263
NdeII	GATC	6 cut(s)	9, 79, 124, 190, 205, 235
NheI	GCTAGC	1 cut(s)	107
NlaIII	CATG	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	442
PagI	TCATGA	1 cut(s)	282
PauI	GCGCGC	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PkrI	GCNGC	2 cut(s)	228, 349
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PsiI	TTATAA	1 cut(s)	449
Psp6I	CCWGG	2 cut(s)	394, 483
PspEI	GGTNACC	1 cut(s)	420
PspGI	CCWGG	2 cut(s)	394, 483
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	3 cut(s)	9, 124, 205
PteI	GCGCGC	1 cut(s)	479
RsaI	GTAC	4 cut(s)	131, 141, 152, 393
RsaNI	GTAC	4 cut(s)	130, 140, 151, 392
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	227, 348
Sau3AI	GATC	6 cut(s)	9, 79, 124, 190, 205, 235
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	4 cut(s)	177, 263, 396, 485
SetI	ASST	6 cut(s)	75, 113, 220, 382, 411, 422
SfaNI	GCATC	2 cut(s)	213, 449
Sse9I	AATT	3 cut(s)	115, 255, 427
SsiI	CCGC	2 cut(s)	182, 356
SspMI	CTAG	2 cut(s)	108, 209
StyD4I	CCNGG	4 cut(s)	175, 261, 394, 483
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	4 cut(s)	15, 193, 246, 492
TasI	AATT	3 cut(s)	115, 255, 427
TatI	WGTACW	3 cut(s)	129, 139, 150
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	2 cut(s)	226, 347
TspDTI	ATGAA	2 cut(s)	271, 299
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	115
XspI	CTAG	2 cut(s)	108, 209
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.