E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G64850 |
| fragaria_vesca | FvH4_7g07320 |
| malus_domestica | MD02G1236300.v1.1 MD07G1078400.v1.1 |
| prunus_persica | Prupe.2G101300_v2.0.a1 |
| pyrus_communis | pycom02g20330 pycom02g20340 pycom03g02200 pycom07g06230 pycom11g02620 |
| rosa_chinensis | RchiOBHm_Chr1g0340081 RchiOBHm_Chr5g0033761 |
| rosa_laevigata | RLG00000029259 |
| rosa_multiflora | Rmu_sc0001215.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00097610 Rroxscaffold_3G00237600 Rroxscaffold_4G00312810 Rroxscaffold_4G00313970 |
| rosa_rugosa | Rorug01G0136100.1 Rorug01G0137100.1 |
| rosa_samantha | Rh1AG156600 Rh1BG125000 Rh1CG146200 Rh1DG086800 Rh4BG205300 Rh4BG413000 Rh4DG287800 |
| rosa_wichuraiana | Rw1G012840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 23 |
| AclWI | GGATC | 3 cut(s) | 56, 72, 265 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 134 |
| AgsI | TTSAA | 4 cut(s) | 29, 169, 190, 301 |
| AjnI | CCWGG | 1 cut(s) | 227 |
| AluBI | AGCT | 2 cut(s) | 244, 292 |
| AluI | AGCT | 2 cut(s) | 244, 292 |
| AlwI | GGATC | 3 cut(s) | 56, 72, 265 |
| ApeKI | GCWGC | 1 cut(s) | 241 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 137, 293 |
| BaeGI | GKGCMC | 1 cut(s) | 41 |
| BbvI | GCAGC | 1 cut(s) | 253 |
| BciT130I | CCWGG | 1 cut(s) | 229 |
| BfaI | CTAG | 1 cut(s) | 260 |
| BisI | GCNGC | 1 cut(s) | 242 |
| BlsI | GCNGC | 1 cut(s) | 243 |
| Bme1390I | CCNGG | 1 cut(s) | 229 |
| BmiI | GGNNCC | 1 cut(s) | 126 |
| BmrFI | CCNGG | 1 cut(s) | 229 |
| BsaAI | YACGTR | 1 cut(s) | 220 |
| BsaBI | GATNNNNATC | 1 cut(s) | 168 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 134 |
| Bse8I | GATNNNNATC | 1 cut(s) | 168 |
| BseBI | CCWGG | 1 cut(s) | 229 |
| BseJI | GATNNNNATC | 1 cut(s) | 168 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 134 |
| BseSI | GKGCMC | 1 cut(s) | 41 |
| BseXI | GCAGC | 1 cut(s) | 253 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 1 cut(s) | 41 |
| Bsp143I | GATC | 4 cut(s) | 61, 77, 181, 270 |
| BspACI | CCGC | 1 cut(s) | 23 |
| BspLI | GGNNCC | 1 cut(s) | 126 |
| BspPI | GGATC | 3 cut(s) | 56, 72, 265 |
| BssMI | GATC | 4 cut(s) | 61, 77, 181, 270 |
| Bst2UI | CCWGG | 1 cut(s) | 229 |
| BstBAI | YACGTR | 1 cut(s) | 220 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 132 |
| BstKTI | GATC | 4 cut(s) | 64, 80, 184, 273 |
| BstMBI | GATC | 4 cut(s) | 61, 77, 181, 270 |
| BstNI | CCWGG | 1 cut(s) | 229 |
| BstSCI | CCNGG | 1 cut(s) | 227 |
| BstSLI | GKGCMC | 1 cut(s) | 41 |
| BstV1I | GCAGC | 1 cut(s) | 253 |
| BstX2I | RGATCY | 1 cut(s) | 77 |
| BstYI | RGATCY | 1 cut(s) | 77 |
| CviJI | RGCY | 2 cut(s) | 244, 292 |
| CviKI_1 | RGCY | 2 cut(s) | 244, 292 |
| DpnI | GATC | 4 cut(s) | 63, 79, 183, 272 |
| DpnII | GATC | 4 cut(s) | 61, 77, 181, 270 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 132 |
| EcoRII | CCWGG | 1 cut(s) | 227 |
| FaiI | YATR | 1 cut(s) | 119 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 281, 313 |
| Fnu4HI | GCNGC | 1 cut(s) | 242 |
| Fsp4HI | GCNGC | 1 cut(s) | 242 |
| FspBI | CTAG | 1 cut(s) | 260 |
| GluI | GCNGC | 1 cut(s) | 242 |
| HinfI | GANTC | 1 cut(s) | 200 |
| Hpy188I | TCNGA | 2 cut(s) | 132, 284 |
| Hpy188III | TCNNGA | 1 cut(s) | 260 |
| HpyAV | CCTTC | 4 cut(s) | 9, 51, 91, 226 |
| HpyCH4IV | ACGT | 1 cut(s) | 219 |
| HpyCH4V | TGCA | 2 cut(s) | 55, 241 |
| HpySE526I | ACGT | 1 cut(s) | 219 |
| Kzo9I | GATC | 4 cut(s) | 61, 77, 181, 270 |
| LpnPI | CCDG | 3 cut(s) | 130, 214, 241 |
| Lsp1109I | GCAGC | 1 cut(s) | 253 |
| MaeI | CTAG | 1 cut(s) | 260 |
| MaeII | ACGT | 1 cut(s) | 219 |
| MaeIII | GTNAC | 1 cut(s) | 94 |
| MalI | GATC | 4 cut(s) | 63, 79, 183, 272 |
| MboI | GATC | 4 cut(s) | 61, 77, 181, 270 |
| MboII | GAAGA | 1 cut(s) | 289 |
| MflI | RGATCY | 1 cut(s) | 77 |
| MhlI | GDGCHC | 1 cut(s) | 41 |
| MluCI | AATT | 2 cut(s) | 72, 253 |
| MnlI | CCTC | 5 cut(s) | 12, 75, 115, 138, 284 |
| MroXI | GAANNNNTTC | 2 cut(s) | 137, 293 |
| MseI | TTAA | 1 cut(s) | 8 |
| MspR9I | CCNGG | 1 cut(s) | 229 |
| MvaI | CCWGG | 1 cut(s) | 229 |
| NdeII | GATC | 4 cut(s) | 61, 77, 181, 270 |
| NlaIV | GGNNCC | 1 cut(s) | 126 |
| PdmI | GAANNNNTTC | 2 cut(s) | 137, 293 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| PfoI | TCCNGGA | 1 cut(s) | 227 |
| PkrI | GCNGC | 1 cut(s) | 243 |
| Ppu21I | YACGTR | 1 cut(s) | 220 |
| Psp6I | CCWGG | 1 cut(s) | 227 |
| PspGI | CCWGG | 1 cut(s) | 227 |
| PspN4I | GGNNCC | 1 cut(s) | 126 |
| PsuI | RGATCY | 1 cut(s) | 77 |
| SaqAI | TTAA | 1 cut(s) | 8 |
| SatI | GCNGC | 1 cut(s) | 242 |
| Sau3AI | GATC | 4 cut(s) | 61, 77, 181, 270 |
| ScrFI | CCNGG | 1 cut(s) | 229 |
| SduI | GDGCHC | 1 cut(s) | 41 |
| SetI | ASST | 5 cut(s) | 130, 139, 222, 246, 294 |
| SgeI | CNNG | 7 cut(s) | 157, 230, 240, 241, 257, 272, 296 |
| Sse9I | AATT | 2 cut(s) | 72, 253 |
| SsiI | CCGC | 1 cut(s) | 23 |
| SspMI | CTAG | 1 cut(s) | 260 |
| StyD4I | CCNGG | 1 cut(s) | 227 |
| TaiI | ACGT | 1 cut(s) | 222 |
| TaqI | TCGA | 1 cut(s) | 269 |
| TasI | AATT | 2 cut(s) | 72, 253 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| Tru1I | TTAA | 1 cut(s) | 8 |
| Tru9I | TTAA | 1 cut(s) | 8 |
| TseI | GCWGC | 1 cut(s) | 241 |
| TspDTI | ATGAA | 4 cut(s) | 17, 73, 130, 192 |
| TspGWI | ACGGA | 1 cut(s) | 298 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 132 |
| XbaI | TCTAGA | 1 cut(s) | 259 |
| XmnI | GAANNNNTTC | 2 cut(s) | 137, 293 |
| XspI | CTAG | 1 cut(s) | 260 |