Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005854

Physical Location & Seq

Genomic Coordinates Forward (+)

16112922 .. 16135372

Gene Structure 22451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG086800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAACCTTATTGGCCAGCCTTATATAGAGAAGCCTATCCAGTTCTGCACTAGATTAAGAGGATACAATTTTGTCAATCTGCAGGTTTCTCAAAACGCGTCTCCTAAGATCAAAGCCTTTATCAATAAGGTGGTACAGTGTCCATTACAAGATATAGATATTCCTCTTTCCGGTTTCCAGTGGGAGTACAATAAGGTTTTGAACTTGGATGCTCTTGACACTGGAATATTGCTGGCTAGCATTCTTTGTAAGCAATTGAGCCGAAGGCAAATCAAGAACATCGCCGATAAGATGTTTGATAATTTCAAAAACAAGATAGGAAGAGCAAATATGAGATTCGAGGATTGGCAATGCTTCAAACCGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

122

Amino Acids

14.18

Weight (kDa)

9.44

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64850
fragaria_vesca	FvH4_7g07320
malus_domestica	MD02G1236300.v1.1 MD07G1078400.v1.1
prunus_persica	Prupe.2G101300_v2.0.a1
pyrus_communis	pycom02g20330 pycom02g20340 pycom03g02200 pycom07g06230 pycom11g02620
rosa_chinensis	RchiOBHm_Chr1g0340081 RchiOBHm_Chr5g0033761
rosa_laevigata	RLG00000029259
rosa_multiflora	Rmu_sc0001215.1_g000002
rosa_roxburghii	Rroxscaffold_2G00097610 Rroxscaffold_3G00237600 Rroxscaffold_4G00312810 Rroxscaffold_4G00313970
rosa_rugosa	Rorug01G0136100.1 Rorug01G0137100.1
rosa_samantha	Rh1AG156600 Rh1BG125000 Rh1CG146200 Rh1DG086800 Rh4BG205300 Rh4BG413000 Rh4DG287800
rosa_wichuraiana	Rw1G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccII	CGCG	1 cut(s)	98
AciI	CCGC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	13
AfaI	GTAC	2 cut(s)	135, 188
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	202, 307, 358
Alw26I	GTCTC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	13
AsuNHI	GCTAGC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	51, 237
BfmI	CTRYAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	56
BmsI	GCATC	1 cut(s)	199
BmtI	GCTAGC	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	3 cut(s)	40, 178, 226
Bse3DI	GCAATG	1 cut(s)	356
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	356
BseNI	ACTGG	3 cut(s)	40, 178, 226
BsgI	GTGCAG	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	98
BspMAI	CTGCAG	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	3 cut(s)	40, 178, 226
BssMI	GATC	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	316
BstC8I	GCNNGC	3 cut(s)	17, 234, 238
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	80
BstUI	CGCG	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	143, 185, 219
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	3 cut(s)	17, 234, 238
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	134, 187
CviJI	RGCY	6 cut(s)	15, 19, 34, 116, 236, 261
CviKI_1	RGCY	6 cut(s)	15, 19, 34, 116, 236, 261
CviQI	GTAC	2 cut(s)	134, 187
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	105
FaiI	YATR	4 cut(s)	24, 26, 155, 332
FokI	GGATG	1 cut(s)	221
FspBI	CTAG	2 cut(s)	51, 237
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	215, 274
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	48, 82
HpyF3I	CTNAG	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	108
LguI	GCTCTTC	1 cut(s)	316
LpnPI	CCDG	7 cut(s)	29, 53, 68, 184, 191, 207, 218
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	2 cut(s)	51, 237
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	1 cut(s)	333
MfeI	CAATTG	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	3 cut(s)	67, 254, 301
MluI	ACGCGT	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	15
MnlI	CCTC	3 cut(s)	53, 174, 334
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	15
MspI	CCGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	240
MvnI	CGCG	1 cut(s)	98
NdeII	GATC	1 cut(s)	108
NheI	GCTAGC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	316
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	84
RsaI	GTAC	2 cut(s)	135, 188
RsaNI	GTAC	2 cut(s)	134, 187
SapI	GCTCTTC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	108
SetI	ASST	4 cut(s)	9, 87, 132, 198
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	67, 254, 301
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	2 cut(s)	51, 237
TaaI	ACNGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	339
TasI	AATT	3 cut(s)	67, 254, 301
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	3 cut(s)	143, 185, 226
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	143, 185, 226
XspI	CTAG	2 cut(s)	51, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.