Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005854

Physical Location & Seq

Genomic Coordinates Reverse (-)

18447107 .. 18448751

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20330.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATTACGCTGCCTGACAATGTGAAAAGAATGCTACAATACCAAAGATCCTCCCTCCTCTTACTCTTATTCTTAACTTATCATCCAATCCAAATCGCAAAAAGTTACAAGGTATCCCTATATTCCTTCGACATCGTTAATGTTGTTTTCTTCCCAGTTCTGAATTTTCCCTGTTTTCTGTTGGGCTTTAGTCTGATATGTTATGTTAGGTTACCGGACATGAAGCAACCGTTAATTACATATATGTTTATAAGGTATCTGATAAGTTTCTGGATTGCAGGTAAGCAATGGAGGCGAAAGCAAATAAAAAGGATTTCAGAGAAGTTGTTTGAACAATTTAGAAATGATAGAAGAACGGATAACTTGAAAATCAATGATCTGTACATCGGTGTACTACTTGTGTACAATGATATCAATAAGCATTTATCCGGCAAGCATTTTGATCCACCCTCGAAAGATCATGTCAGAGAAATGATGAAGGAAAGCGATTTAAATCTTGATGGAGAAATTGACCGCGAAGAGTTTGCAAAGTTCATTGAGTACTTGACAGCGGACAATTTGGTTGTTCTCGATCAACTGATCCTCACACTGATTGCAGCACCGGCGGTTGCAATGGCGACAAAGAGGGTTACCGAGGGTGTACCGGGGATCGGAAAGGTCGTGCAAAGGTTACCCGATTCAGTTTATGCATCCCTTGTGACTCTTACGGTTGTGCTGTTTCAACAAGCGCACCAGGAGTTCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

28.87

Weight (kDa)

9.08

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64850
fragaria_vesca	FvH4_7g07320
malus_domestica	MD02G1236300.v1.1 MD07G1078400.v1.1
prunus_persica	Prupe.2G101300_v2.0.a1
pyrus_communis	pycom02g20330 pycom02g20340 pycom03g02200 pycom07g06230 pycom11g02620
rosa_chinensis	RchiOBHm_Chr1g0340081 RchiOBHm_Chr5g0033761
rosa_laevigata	RLG00000029259
rosa_multiflora	Rmu_sc0001215.1_g000002
rosa_roxburghii	Rroxscaffold_2G00097610 Rroxscaffold_3G00237600 Rroxscaffold_4G00312810 Rroxscaffold_4G00313970
rosa_rugosa	Rorug01G0136100.1 Rorug01G0137100.1
rosa_samantha	Rh1AG156600 Rh1BG125000 Rh1CG146200 Rh1DG086800 Rh4BG205300 Rh4BG413000 Rh4DG287800
rosa_wichuraiana	Rw1G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	269
AccII	CGCG	1 cut(s)	516
AciI	CCGC	3 cut(s)	514, 551, 605
AclWI	GGATC	4 cut(s)	42, 437, 574, 656
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	5 cut(s)	383, 393, 404, 542, 642
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	332, 367, 722
AjnI	CCWGG	1 cut(s)	732
AlwI	GGATC	4 cut(s)	42, 437, 574, 656
ApeKI	GCWGC	2 cut(s)	10, 596
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	730
AsuC2I	CCSGG	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	1 cut(s)	494
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	1 cut(s)	734
BciVI	GTATCC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	645
BfuAI	ACCTGC	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	2 cut(s)	11, 597
BlsI	GCNGC	2 cut(s)	12, 598
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	645, 734
BmrFI	CCNGG	2 cut(s)	645, 734
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	698
BmuI	ACTGGG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	633, 644
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	2 cut(s)	293, 618
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	734
BseDI	CCNNGG	2 cut(s)	633, 644
BseGI	GGATG	2 cut(s)	82, 689
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	2 cut(s)	293, 618
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	516
BsiSI	CCGG	4 cut(s)	215, 429, 602, 644
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmI	GAATGC	1 cut(s)	36
Bsp1407I	TGTACA	2 cut(s)	381, 402
Bsp143I	GATC	7 cut(s)	47, 376, 442, 457, 571, 579, 648
BspACI	CCGC	3 cut(s)	514, 551, 605
BspFNI	CGCG	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	4 cut(s)	42, 437, 574, 656
BsrDI	GCAATG	2 cut(s)	293, 618
BsrFI	RCCGGY	1 cut(s)	601
BsrGI	TGTACA	2 cut(s)	381, 402
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	2 cut(s)	633, 644
BssMI	GATC	7 cut(s)	47, 376, 442, 457, 571, 579, 648
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	2 cut(s)	231, 709
Bst6I	CTCTTC	1 cut(s)	513
BstAUI	TGTACA	2 cut(s)	381, 402
BstC8I	GCNNGC	1 cut(s)	434
BstEII	GGTNACC	3 cut(s)	210, 628, 669
BstF5I	GGATG	2 cut(s)	82, 689
BstFNI	CGCG	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	7 cut(s)	50, 379, 445, 460, 574, 582, 651
BstMBI	GATC	7 cut(s)	47, 376, 442, 457, 571, 579, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 602
BstNI	CCWGG	1 cut(s)	734
BstPI	GGTNACC	3 cut(s)	210, 628, 669
BstSCI	CCNGG	2 cut(s)	643, 732
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	82, 689
BtsIMutI	CAGTG	1 cut(s)	587
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	434
CfoI	GCGC	1 cut(s)	730
Cfr10I	RCCGGY	1 cut(s)	601
Csp6I	GTAC	5 cut(s)	382, 392, 403, 541, 641
CviAII	CATG	2 cut(s)	220, 461
CviJI	RGCY	1 cut(s)	186
CviKI_1	RGCY	1 cut(s)	186
CviQI	GTAC	5 cut(s)	382, 392, 403, 541, 641
DpnI	GATC	7 cut(s)	49, 378, 444, 459, 573, 581, 650
DpnII	GATC	7 cut(s)	47, 376, 442, 457, 571, 579, 648
DraI	TTTAAA	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	412
Eco91I	GGTNACC	3 cut(s)	210, 628, 669
EcoO65I	GGTNACC	3 cut(s)	210, 628, 669
EcoRII	CCWGG	1 cut(s)	732
EcoRV	GATATC	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	691
FaeI	CATG	2 cut(s)	223, 464
FatI	CATG	2 cut(s)	219, 460
Fnu4HI	GCNGC	2 cut(s)	11, 597
FokI	GGATG	2 cut(s)	69, 676
Fsp4HI	GCNGC	2 cut(s)	11, 597
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	2 cut(s)	11, 597
HapII	CCGG	4 cut(s)	215, 429, 602, 644
HhaI	GCGC	1 cut(s)	730
Hin1II	CATG	2 cut(s)	223, 464
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HinfI	GANTC	2 cut(s)	677, 700
HpaII	CCGG	4 cut(s)	215, 429, 602, 644
Hpy166II	GTNNAC	3 cut(s)	392, 403, 641
Hpy188I	TCNGA	6 cut(s)	162, 195, 261, 319, 467, 653
Hpy188III	TCNNGA	3 cut(s)	271, 497, 569
Hpy8I	GTNNAC	3 cut(s)	392, 403, 641
HpyAV	CCTTC	2 cut(s)	136, 472
HpyCH4III	ACNGT	2 cut(s)	231, 709
HpyCH4V	TGCA	6 cut(s)	278, 527, 596, 611, 664, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 602
Hsp92II	CATG	2 cut(s)	223, 464
HspAI	GCGC	1 cut(s)	728
Kzo9I	GATC	7 cut(s)	47, 376, 442, 457, 571, 579, 648
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	1 cut(s)	698
MaeIII	GTNAC	5 cut(s)	104, 210, 628, 669, 697
MalI	GATC	7 cut(s)	49, 378, 444, 459, 573, 581, 650
MboI	GATC	7 cut(s)	47, 376, 442, 457, 571, 579, 648
MboII	GAAGA	3 cut(s)	142, 363, 530
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	5 cut(s)	163, 234, 335, 507, 556
MlyI	GAGTC	1 cut(s)	694
MnlI	CCTC	8 cut(s)	61, 65, 68, 285, 460, 593, 618, 628
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	4 cut(s)	74, 138, 233, 491
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	4 cut(s)	215, 429, 602, 644
MspR9I	CCNGG	2 cut(s)	645, 734
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	734
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	2 cut(s)	292, 602
NciI	CCSGG	1 cut(s)	645
NdeII	GATC	7 cut(s)	47, 376, 442, 457, 571, 579, 648
NlaIII	CATG	2 cut(s)	223, 464
NmuCI	GTSAC	1 cut(s)	697
NsiI	ATGCAT	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	657
PctI	GAATGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	12, 598
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PsiI	TTATAA	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	732
PspEI	GGTNACC	3 cut(s)	210, 628, 669
PspGI	CCWGG	1 cut(s)	732
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	5 cut(s)	383, 393, 404, 542, 642
RsaNI	GTAC	5 cut(s)	382, 392, 403, 541, 641
SaqAI	TTAA	4 cut(s)	74, 138, 233, 491
SatI	GCNGC	2 cut(s)	11, 597
Sau3AI	GATC	7 cut(s)	47, 376, 442, 457, 571, 579, 648
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	2 cut(s)	645, 734
SetI	ASST	6 cut(s)	114, 212, 257, 283, 660, 671
SfaNI	GCATC	1 cut(s)	698
SgrAI	CRCCGGYG	1 cut(s)	601
SmiI	ATTTAAAT	1 cut(s)	492
Sse9I	AATT	5 cut(s)	163, 234, 335, 507, 556
SsiI	CCGC	3 cut(s)	514, 551, 605
StyD4I	CCNGG	2 cut(s)	643, 732
SwaI	ATTTAAAT	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	231, 709
TaqI	TCGA	3 cut(s)	129, 452, 570
TasI	AATT	5 cut(s)	163, 234, 335, 507, 556
TatI	WGTACW	4 cut(s)	381, 391, 402, 540
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	4 cut(s)	74, 138, 233, 491
Tru9I	TTAA	4 cut(s)	74, 138, 233, 491
TscAI	CASTG	1 cut(s)	594
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	2 cut(s)	10, 596
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	3 cut(s)	236, 491, 523
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	594
XapI	RAATTY	1 cut(s)	163
ZrmI	AGTACT	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.