Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001215.1

Orthogroup ID

OG0005854

Physical Location & Seq

Genomic Coordinates Reverse (-)

4045 .. 7860

Gene Structure 3816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001215.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgtctttcagcttcggcttgcctactcaactatctatccatccctcacagaaaaagtcaaacacaaaactctccgatatccaagatcaccttcttcttcttcgtcatcggagccagccaaatcacagaggccgtttttgtatcagtcagtactccgccatgggacaagtccttgacaaattacaaggtaagcaatggaggcgacagcaaatcaggaagattacggacaaggtgtttgatcgtttcaaaaacgaggcaggaagggcaaatttgacattcgaggatgtctacattggtgtactacttgtgtacaatgatattaacaagcgtttacccggcccacattttgatccaccctctaaagatgctgtcagactactgattaaggaacacgatatcaatcttgacggagaaattgaccgggaagaatttgccaagttgatcaagcagattactgctgacacccttgttgttatcagtcagggaatgatcgtcacattggttgcagcaccaacaattgcaatggcgacaaagaaggctactgagggtgtaccccatgttgggaaggtcgtgcaacggttacccacttcagtttatgcatcccttgtgactcttgttgtcatcatggttcagcatgcatgtcaggagccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.47

Weight (kDa)

9.57

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64850
fragaria_vesca	FvH4_7g07320
malus_domestica	MD02G1236300.v1.1 MD07G1078400.v1.1
prunus_persica	Prupe.2G101300_v2.0.a1
pyrus_communis	pycom02g20330 pycom02g20340 pycom03g02200 pycom07g06230 pycom11g02620
rosa_chinensis	RchiOBHm_Chr1g0340081 RchiOBHm_Chr5g0033761
rosa_laevigata	RLG00000029259
rosa_multiflora	Rmu_sc0001215.1_g000002
rosa_roxburghii	Rroxscaffold_2G00097610 Rroxscaffold_3G00237600 Rroxscaffold_4G00312810 Rroxscaffold_4G00313970
rosa_rugosa	Rorug01G0136100.1 Rorug01G0137100.1
rosa_samantha	Rh1AG156600 Rh1BG125000 Rh1CG146200 Rh1DG086800 Rh4BG205300 Rh4BG413000 Rh4DG287800
rosa_wichuraiana	Rw1G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	268, 428
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	4 cut(s)	152, 300, 311, 552
AfiI	CCNNNNNNNGG	2 cut(s)	560, 561
AgsI	TTSAA	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	2 cut(s)	130, 337
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	2 cut(s)	268, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	1 cut(s)	338
AsuC2I	CCSGG	2 cut(s)	336, 422
AsuHPI	GGTGA	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	2 cut(s)	336, 422
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	336, 422
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	113, 648
BmrFI	CCNGG	2 cut(s)	336, 422
BmsI	GCATC	2 cut(s)	355, 608
BpuMI	CCSGG	2 cut(s)	336, 422
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 561
Bse3DI	GCAATG	2 cut(s)	200, 528
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	3 cut(s)	40, 289, 599
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	560, 561
BseMI	GCAATG	2 cut(s)	200, 528
BseMII	CTCAG	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	518
BshFI	GGCC	2 cut(s)	132, 339
BsiSI	CCGG	2 cut(s)	336, 421
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	560, 561
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	132, 339
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	5 cut(s)	85, 238, 349, 441, 489
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	132, 339
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	113, 648
BspPI	GGATC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	200, 528
BsrGI	TGTACA	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	5 cut(s)	85, 238, 349, 441, 489
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	579
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	20, 116, 636
BstDEI	CTNAG	1 cut(s)	543
BstDSI	CCRYGG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	579
BstF5I	GGATG	3 cut(s)	40, 289, 599
BstKTI	GATC	5 cut(s)	88, 241, 352, 444, 492
BstMBI	GATC	5 cut(s)	85, 238, 349, 441, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 263
BstNSI	RCATGY	2 cut(s)	638, 642
BstPI	GGTNACC	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	334, 420
BstV1I	GCAGC	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	132, 339
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	40, 289, 599
Cac8I	GCNNGC	3 cut(s)	20, 116, 636
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	4 cut(s)	151, 299, 310, 551
CviAII	CATG	5 cut(s)	160, 557, 625, 635, 639
CviJI	RGCY	8 cut(s)	12, 18, 114, 118, 132, 339, 539, 649
CviKI_1	RGCY	8 cut(s)	12, 18, 114, 118, 132, 339, 539, 649
CviQI	GTAC	4 cut(s)	151, 299, 310, 551
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	5 cut(s)	87, 240, 351, 443, 491
DpnII	GATC	5 cut(s)	85, 238, 349, 441, 489
EciI	GGCGGA	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	651
Eco32I	GATATC	2 cut(s)	79, 397
Eco57I	CTGAAG	1 cut(s)	573
Eco91I	GGTNACC	1 cut(s)	579
EcoO65I	GGTNACC	1 cut(s)	579
EcoRV	GATATC	2 cut(s)	79, 397
EcoT14I	CCWWGG	1 cut(s)	159
EcoT22I	ATGCAT	2 cut(s)	601, 640
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	5 cut(s)	163, 560, 628, 638, 642
FaiI	YATR	6 cut(s)	161, 558, 597, 626, 636, 640
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	5 cut(s)	159, 556, 624, 634, 638
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	3 cut(s)	27, 296, 586
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	132, 339
HapII	CCGG	2 cut(s)	336, 421
Hin1II	CATG	5 cut(s)	163, 560, 628, 638, 642
HinfI	GANTC	1 cut(s)	610
HpaII	CCGG	2 cut(s)	336, 421
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	5 cut(s)	289, 299, 310, 332, 551
Hpy188I	TCNGA	3 cut(s)	76, 111, 374
Hpy188III	TCNNGA	3 cut(s)	214, 404, 644
Hpy8I	GTNNAC	5 cut(s)	289, 299, 310, 332, 551
HpyAV	CCTTC	4 cut(s)	101, 255, 529, 559
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4V	TGCA	5 cut(s)	506, 521, 574, 599, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 263
HpyF3I	CTNAG	1 cut(s)	543
Hsp92II	CATG	5 cut(s)	163, 560, 628, 638, 642
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	85, 238, 349, 441, 489
LmnI	GCTCC	2 cut(s)	111, 646
LpnPI	CCDG	7 cut(s)	128, 199, 243, 349, 434, 467, 629
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	2 cut(s)	355, 608
MaeIII	GTNAC	3 cut(s)	493, 579, 607
MalI	GATC	5 cut(s)	87, 240, 351, 443, 491
MboI	GATC	5 cut(s)	85, 238, 349, 441, 489
MboII	GAAGA	5 cut(s)	86, 89, 92, 229, 437
MfeI	CAATTG	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	5 cut(s)	179, 268, 414, 428, 516
MlyI	GAGTC	1 cut(s)	604
MnlI	CCTC	7 cut(s)	55, 122, 192, 247, 274, 367, 538
Mph1103I	ATGCAT	2 cut(s)	601, 640
MseI	TTAA	2 cut(s)	321, 384
MspI	CCGG	2 cut(s)	336, 421
MspR9I	CCNGG	2 cut(s)	336, 422
MunI	CAATTG	1 cut(s)	516
MwoI	GCNNNNNNNGC	2 cut(s)	199, 263
NciI	CCSGG	2 cut(s)	336, 422
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	5 cut(s)	85, 238, 349, 441, 489
NlaIII	CATG	5 cut(s)	163, 560, 628, 638, 642
NlaIV	GGNNCC	2 cut(s)	113, 648
NmuCI	GTSAC	2 cut(s)	493, 607
NsiI	ATGCAT	2 cut(s)	601, 640
NspI	RCATGY	2 cut(s)	638, 642
PaeI	GCATGC	1 cut(s)	638
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
PspEI	GGTNACC	1 cut(s)	579
PspN4I	GGNNCC	2 cut(s)	113, 648
PspPI	GGNCC	1 cut(s)	338
RsaI	GTAC	4 cut(s)	152, 300, 311, 552
RsaNI	GTAC	4 cut(s)	151, 299, 310, 551
SaqAI	TTAA	2 cut(s)	321, 384
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	5 cut(s)	85, 238, 349, 441, 489
Sau96I	GGNCC	1 cut(s)	338
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	2 cut(s)	336, 422
SduI	GDGCHC	1 cut(s)	651
SetI	ASST	5 cut(s)	14, 93, 190, 234, 570
SfaNI	GCATC	2 cut(s)	355, 608
SphI	GCATGC	1 cut(s)	638
Sse9I	AATT	5 cut(s)	179, 268, 414, 428, 516
SsiI	CCGC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	334, 420
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	579
TaqI	TCGA	1 cut(s)	279
TasI	AATT	5 cut(s)	179, 268, 414, 428, 516
TatI	WGTACW	3 cut(s)	150, 298, 309
Tru1I	TTAA	2 cut(s)	321, 384
Tru9I	TTAA	2 cut(s)	321, 384
TseFI	GTSAC	2 cut(s)	493, 607
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	2 cut(s)	493, 607
TspGWI	ACGGA	2 cut(s)	239, 423
XapI	RAATTY	2 cut(s)	268, 428
XceI	RCATGY	2 cut(s)	638, 642
XmiI	GTMKAC	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	152
Zsp2I	ATGCAT	2 cut(s)	601, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.