Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005854

Physical Location & Seq

Genomic Coordinates Reverse (-)

37673436 .. 37677142

Gene Structure 3707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGACAAGTCCTTGACAAATTACAAGGTAAGCAATGGAGGCGACAGCAAATCAGGAAGATTACGGACAAGGTGTTTGATCATTTCAAAAACGAGACAGGAAGGGCAAATTTGACATTCGAGGATGTCTACATTGGTGTACTACTTGTGTACAATGATATTAACAAGCGTTTACCCGGCCCACATTTTGATCCACCCTCTAAAGATGCTGTCAGACTACTGATTCAGGTCTTGGAGGTCCTTTGGGGAAGGGGGTGGGAGGTTAGTGATCAGAAGAAGAAGAATTTTACTCATGAACACGATATCAATCTTGACGGAGAAATTGACCGGGAAGAATTTGCCAAGTTGATCAAGCAGATTACTGCCGACACACTTGTTGTTATCAGTCAGGGAATGATCGTCACATTGGTTGCAGCACCAACAATTGCAATGGCCACAAAGAAGGCTACTGAGGGTGTACCCCATGTTGGGAAGGTCGTGCAACGGTTACCCACTTCAGTTTATGCATCGCTTGTGACTCTTGTTGTCATCATGGTTCAGCATGCACGTCAGGAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.09

Weight (kDa)

9.1

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64850
fragaria_vesca	FvH4_7g07320
malus_domestica	MD02G1236300.v1.1 MD07G1078400.v1.1
prunus_persica	Prupe.2G101300_v2.0.a1
pyrus_communis	pycom02g20330 pycom02g20340 pycom03g02200 pycom07g06230 pycom11g02620
rosa_chinensis	RchiOBHm_Chr1g0340081 RchiOBHm_Chr5g0033761
rosa_laevigata	RLG00000029259
rosa_multiflora	Rmu_sc0001215.1_g000002
rosa_roxburghii	Rroxscaffold_2G00097610 Rroxscaffold_3G00237600 Rroxscaffold_4G00312810 Rroxscaffold_4G00313970
rosa_rugosa	Rorug01G0136100.1 Rorug01G0137100.1
rosa_samantha	Rh1AG156600 Rh1BG125000 Rh1CG146200 Rh1DG086800 Rh4BG205300 Rh4BG413000 Rh4DG287800
rosa_wichuraiana	Rw1G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	3 cut(s)	109, 283, 335
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	3 cut(s)	141, 152, 459
AfiI	CCNNNNNNNGG	2 cut(s)	467, 468
AgsI	TTSAA	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	178, 432
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	3 cut(s)	109, 283, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspS9I	GGNCC	2 cut(s)	179, 238
AsuC2I	CCSGG	2 cut(s)	177, 329
AvaII	GGWCC	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	425
BclI	TGATCA	3 cut(s)	79, 268, 348
BcnI	CCSGG	2 cut(s)	177, 329
BcoDI	GTCTC	1 cut(s)	89
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	177, 329
Bme18I	GGWCC	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	179, 238
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	2 cut(s)	177, 329
BmsI	GCATC	2 cut(s)	196, 515
BpuMI	CCSGG	2 cut(s)	177, 329
BsaBI	GATNNNNATC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 468
Bse3DI	GCAATG	2 cut(s)	41, 435
Bse8I	GATNNNNATC	1 cut(s)	306
BseGI	GGATG	1 cut(s)	130
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	467, 468
BseMI	GCAATG	2 cut(s)	41, 435
BseMII	CTCAG	1 cut(s)	441
BseXI	GCAGC	1 cut(s)	425
BshFI	GGCC	2 cut(s)	180, 434
BsiSI	CCGG	2 cut(s)	177, 328
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	467, 468
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	180, 434
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	5 cut(s)	79, 190, 268, 348, 396
BspANI	GGCC	2 cut(s)	180, 434
BspCNI	CTCAG	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	555
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	41, 435
BsrGI	TGTACA	1 cut(s)	150
BssMI	GATC	5 cut(s)	79, 190, 268, 348, 396
Bst4CI	ACNGT	1 cut(s)	486
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	1 cut(s)	450
BstEII	GGTNACC	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	5 cut(s)	82, 193, 271, 351, 399
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	5 cut(s)	79, 190, 268, 348, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	545
BstPI	GGTNACC	1 cut(s)	486
BstSCI	CCNGG	2 cut(s)	175, 327
BstV1I	GCAGC	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	180, 434
BtgZI	GCGATG	1 cut(s)	492
BtrI	CACGTC	1 cut(s)	548
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	543
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	179, 238
Csp6I	GTAC	3 cut(s)	140, 151, 458
CviAII	CATG	4 cut(s)	293, 464, 532, 542
CviJI	RGCY	4 cut(s)	180, 434, 446, 556
CviKI_1	RGCY	4 cut(s)	180, 434, 446, 556
CviQI	GTAC	3 cut(s)	140, 151, 458
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	5 cut(s)	81, 192, 270, 350, 398
DpnII	GATC	5 cut(s)	79, 190, 268, 348, 396
EaeI	YGGCCR	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	480
Eco91I	GGTNACC	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	486
EcoRV	GATATC	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	4 cut(s)	296, 467, 535, 545
FaiI	YATR	5 cut(s)	294, 465, 504, 533, 543
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	292, 463, 531, 541
FbaI	TGATCA	3 cut(s)	79, 268, 348
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	180, 434
HapII	CCGG	2 cut(s)	177, 328
Hin1II	CATG	4 cut(s)	296, 467, 535, 545
HinfI	GANTC	2 cut(s)	223, 517
HpaII	CCGG	2 cut(s)	177, 328
Hpy166II	GTNNAC	5 cut(s)	130, 140, 151, 173, 458
Hpy188I	TCNGA	2 cut(s)	215, 273
Hpy188III	TCNNGA	4 cut(s)	55, 293, 311, 551
Hpy8I	GTNNAC	5 cut(s)	130, 140, 151, 173, 458
HpyAV	CCTTC	4 cut(s)	96, 243, 436, 466
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	413, 428, 481, 506, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	4 cut(s)	296, 467, 535, 545
Ksp22I	TGATCA	3 cut(s)	79, 268, 348
Kzo9I	GATC	5 cut(s)	79, 190, 268, 348, 396
LmnI	GCTCC	1 cut(s)	553
LpnPI	CCDG	7 cut(s)	40, 84, 190, 212, 341, 374, 536
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	2 cut(s)	196, 515
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	3 cut(s)	400, 486, 514
MalI	GATC	5 cut(s)	81, 192, 270, 350, 398
MboI	GATC	5 cut(s)	79, 190, 268, 348, 396
MboII	GAAGA	5 cut(s)	70, 286, 289, 292, 344
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	558
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	6 cut(s)	20, 109, 283, 321, 335, 423
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	6 cut(s)	33, 115, 208, 229, 253, 445
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	434
MspI	CCGG	2 cut(s)	177, 328
MspR9I	CCNGG	2 cut(s)	177, 329
MunI	CAATTG	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	40
NciI	CCSGG	2 cut(s)	177, 329
NdeII	GATC	5 cut(s)	79, 190, 268, 348, 396
NlaIII	CATG	4 cut(s)	296, 467, 535, 545
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	2 cut(s)	400, 514
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	545
PagI	TCATGA	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	2 cut(s)	179, 238
PspPPI	RGGWCCY	1 cut(s)	238
RsaI	GTAC	3 cut(s)	141, 152, 459
RsaNI	GTAC	3 cut(s)	140, 151, 458
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	5 cut(s)	79, 190, 268, 348, 396
Sau96I	GGNCC	2 cut(s)	179, 238
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	2 cut(s)	177, 329
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	7 cut(s)	31, 75, 231, 240, 264, 477, 550
SfaNI	GCATC	2 cut(s)	196, 515
SinI	GGWCC	1 cut(s)	238
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	6 cut(s)	20, 109, 283, 321, 335, 423
StyD4I	CCNGG	2 cut(s)	175, 327
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	1 cut(s)	120
TasI	AATT	6 cut(s)	20, 109, 283, 321, 335, 423
TatI	WGTACW	2 cut(s)	139, 150
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseFI	GTSAC	2 cut(s)	400, 514
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	2 cut(s)	400, 514
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	2 cut(s)	80, 330
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	3 cut(s)	109, 283, 335
XceI	RCATGY	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.