Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Forward (+)

24427266 .. 24428673

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGACAATTCTTGTCGTAGATCGATACTACATGCTCATGAACTTACTCTTTGCTCTAACTTGTCTCCTCTTGAACTTAACTCATTGCTTTAGCCCCAAGAAATTCAACATTTCAGCCGCCACGACCAGCGATTCTGATTGGTCTATCGCCGGATCTACGTGGTATGGTAACCCCACCGGATACGGAAGCGACGGTGGAGCTTGTGGTTATGGAAATGCTGTTGCACAACCTCCGTTTTCGAAAATGGTATCAGCCGGAGGTCCGTCGTTGTTCAAGTCAGGAAAAGGATGTGGTGCATGTTACCAGGTAAAATGCACTTCGAAATCGGCATGTTCGAAAAATCCTGTTACGGTGGTCATTACAGATGAATGTCCTGGATGCGTTAAGGAGTCGGTCCATTTCGATTTGAGTGGTACAGCGTTTGGTGCCATGGCAATTTCTGGTCAAGATAGTCAGCTTCGCAATGTCGGAGAATTGCAGATTCTTTATAAAAAGGTTGAGTGCAACTATATAGGCAAAACGGTGACATTTCAAGTGGATAAAGGTTCAAACGCTAACTCCTTCGCGGTTTTGGTTGCGTATGTAAACGGAGACGGCGAAATTGGCCGAATTGAACTCAAACAAGCTCTAGATTCTGACAAGTGGTTGTCTATGAGCCAATCATGGGGCGCCGTGTGGAAGCTCGACGTGTCGTCACCTTTGCGTGCCCCGCTCTCTCTCCGAGTGACTTCGTTGGAATCCGGCAAGACTGTTGTGGCTTCCAATGTCATTCCCGCAAACTGGCAACCCGGTGCGATATACAAATCCAACGTCAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

273

Amino Acids

29.13

Weight (kDa)

8.46

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	84 - 148	1.2e-17	Lytic transglycolase
Expansin_C	PF01357	175 - 258	3.2e-27	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccB1I	GGYRCC	2 cut(s)	425, 668
AccBSI	CCGCTC	1 cut(s)	712
AccII	CGCG	1 cut(s)	566
AciI	CCGC	4 cut(s)	117, 566, 710, 774
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	664, 780
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	6 cut(s)	73, 106, 274, 533, 549, 614
AhdI	GACNNNNNGTC	1 cut(s)	691
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	2 cut(s)	303, 373
AluBI	AGCT	4 cut(s)	200, 457, 626, 682
AluI	AGCT	4 cut(s)	200, 457, 626, 682
Alw26I	GTCTC	2 cut(s)	68, 585
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	604
ApoI	RAATTY	1 cut(s)	101
ArsI	GACNNNNNNTTYG	1 cut(s)	795
AspLEI	GCGC	1 cut(s)	671
AspS9I	GGNCC	2 cut(s)	260, 394
AsuC2I	CCSGG	1 cut(s)	789
AsuHPI	GGTGA	2 cut(s)	535, 687
AsuII	TTCGAA	3 cut(s)	239, 320, 335
AvaII	GGWCC	2 cut(s)	260, 394
BaeGI	GKGCMC	1 cut(s)	709
BanI	GGYRCC	2 cut(s)	425, 668
BceAI	ACGGC	2 cut(s)	610, 656
BciT130I	CCWGG	2 cut(s)	305, 375
BciVI	GTATCC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	789
BcoDI	GTCTC	2 cut(s)	68, 585
BfaI	CTAG	1 cut(s)	629
BfoI	RGCGCY	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	305, 375, 789
Bme18I	GGWCC	2 cut(s)	260, 394
BmeRI	GACNNNNNGTC	1 cut(s)	691
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	260, 394
BmiI	GGNNCC	2 cut(s)	427, 670
BmrFI	CCNGG	3 cut(s)	305, 375, 789
BmsI	GCATC	1 cut(s)	368
Bpu14I	TTCGAA	3 cut(s)	239, 320, 335
BpuMI	CCSGG	1 cut(s)	789
Bsa29I	ATCGAT	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	664, 780
Bse1I	ACTGG	1 cut(s)	785
Bse3DI	GCAATG	2 cut(s)	82, 469
BseBI	CCWGG	2 cut(s)	305, 375
BseCI	ATCGAT	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	293, 383
BseLI	CCNNNNNNNGG	2 cut(s)	664, 780
BseMI	GCAATG	2 cut(s)	82, 469
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	709
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	606
BshNI	GGYRCC	2 cut(s)	425, 668
BshVI	ATCGAT	1 cut(s)	22
BsiSI	CCGG	5 cut(s)	150, 177, 255, 741, 789
BslI	CCNNNNNNNGG	2 cut(s)	664, 780
BsmAI	GTCTC	2 cut(s)	68, 585
BsmBI	CGTCTC	1 cut(s)	585
BsnI	GGCC	1 cut(s)	606
Bsp119I	TTCGAA	3 cut(s)	239, 320, 335
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	2 cut(s)	19, 152
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	4 cut(s)	117, 566, 710, 774
BspANI	GGCC	1 cut(s)	606
BspDI	ATCGAT	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	566
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	427, 670
BspPI	GGATC	1 cut(s)	160
BspT104I	TTCGAA	3 cut(s)	239, 320, 335
BspT107I	GGYRCC	2 cut(s)	425, 668
BsrBI	CCGCTC	1 cut(s)	712
BsrDI	GCAATG	2 cut(s)	82, 469
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	2 cut(s)	19, 152
BssNI	GRCGYC	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	305, 375
Bst4CI	ACNGT	4 cut(s)	194, 352, 523, 751
BstACI	GRCGYC	1 cut(s)	669
BstBAI	YACGTR	1 cut(s)	159
BstBI	TTCGAA	3 cut(s)	239, 320, 335
BstC8I	GCNNGC	1 cut(s)	705
BstDSI	CCRYGG	1 cut(s)	429
BstEII	GGTNACC	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	293, 383
BstFNI	CGCG	1 cut(s)	566
BstH2I	RGCGCY	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	2 cut(s)	22, 155
BstMAI	GTCTC	2 cut(s)	68, 585
BstMBI	GATC	2 cut(s)	19, 152
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 603, 709
BstNI	CCWGG	2 cut(s)	305, 375
BstNSI	RCATGY	3 cut(s)	34, 300, 333
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	3 cut(s)	303, 373, 787
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	606
BsuTUI	ATCGAT	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	429
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	293, 383
Cac8I	GCNNGC	1 cut(s)	705
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	260, 394
ClaI	ATCGAT	1 cut(s)	22
CsiI	ACCWGGT	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	6 cut(s)	31, 37, 297, 330, 430, 663
CviQI	GTAC	1 cut(s)	414
DinI	GGCGCC	1 cut(s)	670
DpnI	GATC	2 cut(s)	21, 154
DpnII	GATC	2 cut(s)	19, 152
DriI	GACNNNNNGTC	1 cut(s)	691
EaeI	YGGCCR	1 cut(s)	604
Eam1105I	GACNNNNNGTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	260, 394
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	303, 373
EcoT14I	CCWWGG	1 cut(s)	429
EgeI	GGCGCC	1 cut(s)	670
EheI	GGCGCC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	585
FaeI	CATG	6 cut(s)	34, 40, 300, 333, 433, 666
FatI	CATG	6 cut(s)	30, 36, 296, 329, 429, 662
FauI	CCCGC	2 cut(s)	717, 781
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	300, 390
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	672
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	5 cut(s)	150, 177, 255, 741, 789
HhaI	GCGC	1 cut(s)	671
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	6 cut(s)	34, 40, 300, 333, 433, 666
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	5 cut(s)	131, 389, 481, 632, 737
HpaII	CCGG	5 cut(s)	150, 177, 255, 741, 789
HphI	GGTGA	2 cut(s)	535, 687
Hpy166II	GTNNAC	2 cut(s)	586, 814
Hpy188I	TCNGA	4 cut(s)	136, 470, 637, 722
Hpy188III	TCNNGA	5 cut(s)	37, 70, 279, 446, 629
Hpy8I	GTNNAC	2 cut(s)	586, 814
Hpy99I	CGWCG	3 cut(s)	194, 268, 689
HpyAV	CCTTC	1 cut(s)	571
HpyCH4III	ACNGT	4 cut(s)	194, 352, 523, 751
HpyCH4IV	ACGT	3 cut(s)	158, 687, 810
HpyCH4V	TGCA	5 cut(s)	224, 296, 315, 478, 504
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 603, 709
HpySE526I	ACGT	3 cut(s)	158, 687, 810
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	6 cut(s)	34, 40, 300, 333, 433, 666
HspAI	GCGC	1 cut(s)	669
KasI	GGCGCC	1 cut(s)	668
Kzo9I	GATC	2 cut(s)	19, 152
LmnI	GCTCC	1 cut(s)	197
LweI	GCATC	1 cut(s)	368
MabI	ACCWGGT	1 cut(s)	303
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	3 cut(s)	158, 687, 810
MaeIII	GTNAC	6 cut(s)	167, 299, 346, 523, 693, 724
MalI	GATC	2 cut(s)	21, 154
MbiI	CCGCTC	1 cut(s)	712
MboI	GATC	2 cut(s)	19, 152
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	6 cut(s)	6, 101, 435, 473, 600, 609
Mly113I	GGCGCC	1 cut(s)	669
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	2 cut(s)	448, 714
MnlI	CCTC	3 cut(s)	77, 240, 251
MseI	TTAA	3 cut(s)	77, 384, 820
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	5 cut(s)	150, 177, 255, 741, 789
MspR9I	CCNGG	3 cut(s)	305, 375, 789
MvaI	CCWGG	2 cut(s)	305, 375
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	3 cut(s)	425, 603, 709
NarI	GGCGCC	1 cut(s)	669
NciI	CCSGG	1 cut(s)	789
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	2 cut(s)	19, 152
NlaIII	CATG	6 cut(s)	34, 40, 300, 333, 433, 666
NlaIV	GGNNCC	2 cut(s)	427, 670
NmuCI	GTSAC	3 cut(s)	523, 693, 724
NspI	RCATGY	3 cut(s)	34, 300, 333
NspV	TTCGAA	3 cut(s)	239, 320, 335
PagI	TCATGA	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	2 cut(s)	332, 594
PfeI	GAWTC	4 cut(s)	131, 481, 632, 737
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	397
PluTI	GGCGCC	1 cut(s)	672
PpsI	GAGTC	1 cut(s)	397
Ppu21I	YACGTR	1 cut(s)	159
PsiI	TTATAA	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	303, 373
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	303, 373
PspN4I	GGNNCC	2 cut(s)	427, 670
PspPI	GGNCC	2 cut(s)	260, 394
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	77, 384, 820
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	19, 152
Sau96I	GGNCC	2 cut(s)	260, 394
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	3 cut(s)	305, 375, 789
SduI	GDGCHC	1 cut(s)	709
SexAI	ACCWGGT	1 cut(s)	303
SfaNI	GCATC	1 cut(s)	368
SfoI	GGCGCC	1 cut(s)	670
SfuI	TTCGAA	3 cut(s)	239, 320, 335
SinI	GGWCC	2 cut(s)	260, 394
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	6 cut(s)	6, 101, 435, 473, 600, 609
SsiI	CCGC	4 cut(s)	117, 566, 710, 774
SspDI	GGCGCC	1 cut(s)	668
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	3 cut(s)	303, 373, 787
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	4 cut(s)	194, 352, 523, 751
TaiI	ACGT	3 cut(s)	161, 690, 813
TaqI	TCGA	6 cut(s)	22, 239, 320, 335, 402, 684
TaqII	GACCGA	1 cut(s)	382
TasI	AATT	6 cut(s)	6, 101, 435, 473, 600, 609
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	4 cut(s)	131, 481, 632, 737
Tru1I	TTAA	3 cut(s)	77, 384, 820
Tru9I	TTAA	3 cut(s)	77, 384, 820
TseFI	GTSAC	3 cut(s)	523, 693, 724
Tsp45I	GTSAC	3 cut(s)	523, 693, 724
TspDTI	ATGAA	2 cut(s)	53, 381
TspGWI	ACGGA	4 cut(s)	198, 222, 252, 603
VpaK11BI	GGWCC	2 cut(s)	260, 394
XapI	RAATTY	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	628
XceI	RCATGY	3 cut(s)	34, 300, 333
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.