Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002022.1

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Reverse (-)

1785 .. 3282

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002022.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atggctagtttaagaagcattttgtacttagcaactgtgttttgctgcttgtttgagcagagcttttcttttaatccgaagcagttgaacttgtcactcagcgccacccaatgggacactgccggagctacttggtacggcagccctgatggttttggaagtgacggtggatcttgtgggtatggagatgtagtttcacaagcgccattctcttccatggttacggcagtaggtccttctctttacaaatccggcagggaatgtggagcttgctatcagattcttgccctggagggccttgtgcgtccgatgctgcacattttgaccttagtggaacttcatttggtgccatggcacttcctggtcaaggggaggaactccgcaatgcaggagtattggaaatccaatttgcacggaaaaactattgcattccacgtggaccagggatcgaactcgaactactttgctgctgtgatcgagtacgaagagggagatggtgatcttggtagtgttgagttgaaggacgcttcctcaactgacagtgaaggtggcgaggagtggcgtgccatgcaacaatcttggggtgcagtgtggaaacttgatgcagggtcagcactacatcctccactgtcaataaagttgacttctgggtactcaggccagacattgttggctaaaaatgtgattccaaatgggtggcaacctggtgctacctacagatccgtggtcaattatctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

246

Amino Acids

26.71

Weight (kDa)

5.3

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AccB7I	CCANNNNNTGG	1 cut(s)	111
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	3 cut(s)	178, 454, 714
AcvI	CACGTG	1 cut(s)	436
AfaI	GTAC	4 cut(s)	26, 137, 482, 653
AfiI	CCNNNNNNNGG	2 cut(s)	111, 367
AgsI	TTSAA	2 cut(s)	88, 520
AjnI	CCWGG	4 cut(s)	288, 360, 441, 703
AluBI	AGCT	3 cut(s)	63, 128, 269
AluI	AGCT	3 cut(s)	63, 128, 269
AlwI	GGATC	3 cut(s)	178, 454, 714
AoxI	GGCC	2 cut(s)	295, 658
ApeKI	GCWGC	4 cut(s)	45, 141, 313, 467
AspLEI	GCGC	2 cut(s)	104, 205
AspS9I	GGNCC	3 cut(s)	233, 295, 439
AsuHPI	GGTGA	1 cut(s)	509
AvaII	GGWCC	2 cut(s)	233, 439
BanI	GGYRCC	1 cut(s)	346
BbrPI	CACGTG	1 cut(s)	436
BbvI	GCAGC	4 cut(s)	32, 153, 300, 454
BccI	CCATC	2 cut(s)	143, 488
BceAI	ACGGC	2 cut(s)	154, 240
BciT130I	CCWGG	4 cut(s)	290, 362, 443, 705
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	715
BfoI	RGCGCY	2 cut(s)	105, 206
BisI	GCNGC	4 cut(s)	46, 142, 314, 468
BlsI	GCNGC	4 cut(s)	47, 143, 315, 469
Bme1390I	CCNGG	4 cut(s)	290, 362, 443, 705
Bme18I	GGWCC	2 cut(s)	233, 439
BmgT120I	GGNCC	3 cut(s)	233, 295, 439
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	4 cut(s)	290, 362, 443, 705
BmsI	GCATC	2 cut(s)	300, 592
BpmI	CTGGAG	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	5 cut(s)	216, 288, 350, 442, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 367
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	4 cut(s)	290, 362, 443, 705
BseDI	CCNNGG	5 cut(s)	216, 288, 350, 442, 723
BseGI	GGATG	1 cut(s)	619
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	111, 367
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	112, 669
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	4 cut(s)	32, 153, 300, 454
BsgI	GTGCAG	2 cut(s)	299, 606
BshFI	GGCC	2 cut(s)	297, 660
BshNI	GGYRCC	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	123, 252
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	111, 367
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	297, 660
Bsp143I	GATC	5 cut(s)	170, 446, 474, 499, 719
Bsp19I	CCATGG	2 cut(s)	216, 350
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	297, 660
BspCNI	CTCAG	2 cut(s)	111, 668
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	178, 454, 714
BspT107I	GGYRCC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	390
BssECI	CCNNGG	5 cut(s)	216, 288, 350, 442, 723
BssMI	GATC	5 cut(s)	170, 446, 474, 499, 719
BssT1I	CCWWGG	2 cut(s)	216, 350
Bst2UI	CCWGG	4 cut(s)	290, 362, 443, 705
Bst4CI	ACNGT	4 cut(s)	37, 167, 542, 630
Bst6I	CTCTTC	2 cut(s)	217, 480
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	271, 564
BstDEI	CTNAG	4 cut(s)	28, 98, 328, 655
BstDSI	CCRYGG	3 cut(s)	216, 350, 723
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	619
BstH2I	RGCGCY	2 cut(s)	105, 206
BstHHI	GCGC	2 cut(s)	104, 205
BstKTI	GATC	5 cut(s)	173, 449, 477, 502, 722
BstMBI	GATC	5 cut(s)	170, 446, 474, 499, 719
BstMWI	GCNNNNNNNGC	3 cut(s)	310, 568, 611
BstNI	CCWGG	4 cut(s)	290, 362, 443, 705
BstSCI	CCNGG	4 cut(s)	288, 360, 441, 703
BstSFI	CTRYAG	1 cut(s)	715
BstV1I	GCAGC	4 cut(s)	32, 153, 300, 454
BstX2I	RGATCY	2 cut(s)	170, 719
BstXI	CCANNNNNNTGG	1 cut(s)	696
BstYI	RGATCY	2 cut(s)	170, 719
BsuRI	GGCC	2 cut(s)	297, 660
BtgI	CCRYGG	3 cut(s)	216, 350, 723
BtsCI	GGATG	1 cut(s)	619
BtsI	GCAGTG	2 cut(s)	117, 594
BtsIMutI	CAGTG	4 cut(s)	117, 547, 594, 626
Cac8I	GCNNGC	2 cut(s)	271, 564
CfoI	GCGC	2 cut(s)	104, 205
Cfr13I	GGNCC	3 cut(s)	233, 295, 439
CseI	GACGC	2 cut(s)	293, 533
CsiI	ACCWGGT	1 cut(s)	703
Csp6I	GTAC	4 cut(s)	25, 136, 481, 652
CviAII	CATG	3 cut(s)	217, 351, 568
CviJI	RGCY	8 cut(s)	5, 63, 128, 144, 269, 297, 660, 674
CviKI_1	RGCY	8 cut(s)	5, 63, 128, 144, 269, 297, 660, 674
CviQI	GTAC	4 cut(s)	25, 136, 481, 652
DdeI	CTNAG	4 cut(s)	28, 98, 328, 655
DpnI	GATC	5 cut(s)	172, 448, 476, 501, 721
DpnII	GATC	5 cut(s)	170, 446, 474, 499, 719
Eam1104I	CTCTTC	2 cut(s)	217, 480
EarI	CTCTTC	2 cut(s)	217, 480
Eco130I	CCWWGG	2 cut(s)	216, 350
Eco47I	GGWCC	2 cut(s)	233, 439
Eco72I	CACGTG	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	2 cut(s)	233, 295
EcoRII	CCWGG	4 cut(s)	288, 360, 441, 703
EcoT14I	CCWWGG	2 cut(s)	216, 350
ErhI	CCWWGG	2 cut(s)	216, 350
FaeI	CATG	3 cut(s)	220, 354, 571
FaiI	YATR	5 cut(s)	183, 218, 352, 569, 739
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	216, 350, 567
Fnu4HI	GCNGC	4 cut(s)	46, 142, 314, 468
FokI	GGATG	1 cut(s)	606
Fsp4HI	GCNGC	4 cut(s)	46, 142, 314, 468
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	103, 204
GluI	GCNGC	4 cut(s)	46, 142, 314, 468
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	2 cut(s)	105, 206
HaeIII	GGCC	2 cut(s)	297, 660
HapII	CCGG	2 cut(s)	123, 252
HgaI	GACGC	2 cut(s)	293, 533
HhaI	GCGC	2 cut(s)	104, 205
Hin1II	CATG	3 cut(s)	220, 354, 571
Hin6I	GCGC	2 cut(s)	102, 203
HinP1I	GCGC	2 cut(s)	102, 203
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	2 cut(s)	280, 685
HpaII	CCGG	2 cut(s)	123, 252
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	2 cut(s)	439, 642
Hpy188I	TCNGA	3 cut(s)	78, 279, 309
Hpy8I	GTNNAC	2 cut(s)	439, 642
HpyAV	CCTTC	3 cut(s)	246, 514, 539
HpyCH4III	ACNGT	4 cut(s)	37, 167, 542, 630
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	7 cut(s)	316, 388, 412, 428, 571, 587, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	310, 568, 611
HpyF3I	CTNAG	4 cut(s)	28, 98, 328, 655
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	220, 354, 571
HspAI	GCGC	2 cut(s)	102, 203
Kzo9I	GATC	5 cut(s)	170, 446, 474, 499, 719
LmnI	GCTCC	2 cut(s)	125, 266
Lsp1109I	GCAGC	4 cut(s)	32, 153, 300, 454
LweI	GCATC	2 cut(s)	300, 592
MabI	ACCWGGT	1 cut(s)	703
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	93, 161, 220
MalI	GATC	5 cut(s)	172, 448, 476, 501, 721
MboI	GATC	5 cut(s)	170, 446, 474, 499, 719
MboII	GAAGA	2 cut(s)	204, 497
MflI	RGATCY	2 cut(s)	170, 719
MluCI	AATT	2 cut(s)	406, 730
MnlI	CCTC	6 cut(s)	286, 366, 481, 541, 547, 633
MseI	TTAA	2 cut(s)	11, 72
MspI	CCGG	2 cut(s)	123, 252
MspR9I	CCNGG	4 cut(s)	290, 362, 443, 705
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	4 cut(s)	290, 362, 443, 705
MwoI	GCNNNNNNNGC	3 cut(s)	310, 568, 611
NcoI	CCATGG	2 cut(s)	216, 350
NdeII	GATC	5 cut(s)	170, 446, 474, 499, 719
NlaIII	CATG	3 cut(s)	220, 354, 571
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	93, 161
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	280, 685
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	47, 143, 315, 469
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	436
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	4 cut(s)	288, 360, 441, 703
PspCI	CACGTG	1 cut(s)	436
PspGI	CCWGG	4 cut(s)	288, 360, 441, 703
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	3 cut(s)	233, 295, 439
PspPPI	RGGWCCY	1 cut(s)	233
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PsuI	RGATCY	2 cut(s)	170, 719
RsaI	GTAC	4 cut(s)	26, 137, 482, 653
RsaNI	GTAC	4 cut(s)	25, 136, 481, 652
SaqAI	TTAA	2 cut(s)	11, 72
SatI	GCNGC	4 cut(s)	46, 142, 314, 468
Sau3AI	GATC	5 cut(s)	170, 446, 474, 499, 719
Sau96I	GGNCC	3 cut(s)	233, 295, 439
ScrFI	CCNGG	4 cut(s)	290, 362, 443, 705
SetI	ASST	9 cut(s)	65, 130, 235, 271, 329, 438, 550, 706, 716
SexAI	ACCWGGT	1 cut(s)	703
SfaNI	GCATC	2 cut(s)	300, 592
SfcI	CTRYAG	1 cut(s)	715
SinI	GGWCC	2 cut(s)	233, 439
Sse9I	AATT	2 cut(s)	406, 730
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	4 cut(s)	288, 360, 441, 703
StyI	CCWWGG	2 cut(s)	216, 350
TaaI	ACNGT	4 cut(s)	37, 167, 542, 630
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	3 cut(s)	449, 455, 477
TasI	AATT	2 cut(s)	406, 730
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	280, 685
Tru1I	TTAA	2 cut(s)	11, 72
Tru9I	TTAA	2 cut(s)	11, 72
TscAI	CASTG	4 cut(s)	124, 547, 594, 633
TseFI	GTSAC	2 cut(s)	93, 161
TseI	GCWGC	4 cut(s)	45, 141, 313, 467
Tsp45I	GTSAC	2 cut(s)	93, 161
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	2 cut(s)	429, 712
TspRI	CASTG	4 cut(s)	124, 547, 594, 633
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	233, 439
XagI	CCTNNNNNAGG	1 cut(s)	365
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.