Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Forward (+)

20332417 .. 20334412

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTAGTTTACGAAGCATATTGTGCTTGGTAACTGTGTTTTGCTGCTTGTTTGAAGGGAGCTTTTCTTTTAACCCTAAGCACTTGAACTTGTCACTCAGCGCCACCCATTGGTCCTCCGCCGGAGCTACCTGGTACGGCAGCCCTGATGGTTTTGGAAGTGACGGAGGGTCTTGTGGGTATGGAGATGTAGTTTCACAAGCTCCATTCTCTTCCATGGTTACTTCAGTAGGTCCTTCTCTTTACAAATCCGGCAAGGAATGTGGAGCTTGTTATCAGATAAAATGCACCAAACATAAATCGTGTTCCGGCAAACCAGTGAGGGTGGTCATCACAGATTCTTGCCCGGGATGTGTGTCTGAGACTGCACACTTCGACCTTAGTGGAACTTCATTTGGTGCCATGGCACTTCCTGGTCAAGGCGAGGAACTCCGCAATGCAGGACTATTGGAAATCCGATTCGCACGGGTGGCATGTGATTATTCCGGAAAAACCATTGCATTTCATGTAGACCAGGGATCGAACTCGAACTACTTTGCTGCAGTGATCGAGTACGAAGAGGGAGATGGTGATCTTGGTAGTGTGGAGTTGATGGACGCTTCCTCATCGGACAGTGTAGGTGACGAGGAGTGGCGTGCCATGCAACAATCTTGGGGTGCAGTGTGGAAGCTTGATGCAGGGTCAGCACTACACCCTCCATTGTCGATAAAGTTGACCTCTCAGTACTCAGGCCAGACCTTGTTGGCTAAAAATGTGATTCCAAAGAATTGGCAACCTGGTGCTACCTACAGATCCGTGGTCAATTACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

271

Amino Acids

28.74

Weight (kDa)

5.48

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	77 - 141	2.7e-17	Lytic transglycolase
Expansin_C	PF01357	166 - 254	4.7e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	510
AccIII	TCCGGA	1 cut(s)	485
AciI	CCGC	2 cut(s)	120, 433
AclWI	GGATC	2 cut(s)	526, 786
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	3 cut(s)	137, 554, 725
AfiI	CCNNNNNNNGG	2 cut(s)	111, 419
AgsI	TTSAA	2 cut(s)	56, 88
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	4 cut(s)	131, 412, 513, 775
AluBI	AGCT	5 cut(s)	63, 128, 203, 269, 670
AluI	AGCT	5 cut(s)	63, 128, 203, 269, 670
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	2 cut(s)	526, 786
Ama87I	CYCGRG	1 cut(s)	346
Aor13HI	TCCGGA	1 cut(s)	485
AoxI	GGCC	1 cut(s)	730
ApeKI	GCWGC	3 cut(s)	45, 141, 539
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	114, 233
AsuC2I	CCSGG	2 cut(s)	347, 348
AsuHPI	GGTGA	2 cut(s)	581, 632
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	114, 233
BanI	GGYRCC	1 cut(s)	398
BbvI	GCAGC	3 cut(s)	32, 153, 526
BccI	CCATC	3 cut(s)	143, 560, 586
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	4 cut(s)	133, 414, 515, 777
BcnI	CCSGG	2 cut(s)	347, 348
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	2 cut(s)	540, 787
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	3 cut(s)	46, 142, 540
BlsI	GCNGC	3 cut(s)	47, 143, 541
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	6 cut(s)	133, 347, 348, 414, 515, 777
Bme18I	GGWCC	2 cut(s)	114, 233
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	114, 233
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	6 cut(s)	133, 347, 348, 414, 515, 777
BmsI	GCATC	1 cut(s)	664
Bpu10I	CCTNAGC	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	347, 348
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	5 cut(s)	216, 346, 402, 514, 795
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 419
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	2 cut(s)	442, 495
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	485
BseBI	CCWGG	4 cut(s)	133, 414, 515, 777
BseDI	CCNNGG	5 cut(s)	216, 346, 402, 514, 795
BseGI	GGATG	1 cut(s)	356
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	111, 419
BseMI	GCAATG	2 cut(s)	442, 495
BseMII	CTCAG	4 cut(s)	112, 351, 734, 741
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	3 cut(s)	32, 153, 526
BsgI	GTGCAG	2 cut(s)	351, 678
BshFI	GGCC	1 cut(s)	732
BshNI	GGYRCC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	5 cut(s)	123, 252, 309, 347, 486
BslI	CCNNNNNNNGG	2 cut(s)	111, 419
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	732
BsoBI	CYCGRG	1 cut(s)	346
Bsp13I	TCCGGA	1 cut(s)	485
Bsp143I	GATC	4 cut(s)	518, 546, 571, 791
Bsp19I	CCATGG	2 cut(s)	216, 402
BspACI	CCGC	2 cut(s)	120, 433
BspANI	GGCC	1 cut(s)	732
BspCNI	CTCAG	4 cut(s)	111, 352, 733, 740
BspEI	TCCGGA	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	2 cut(s)	526, 786
BspT107I	GGYRCC	1 cut(s)	398
BsrDI	GCAATG	2 cut(s)	442, 495
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	5 cut(s)	216, 346, 402, 514, 795
BssMI	GATC	4 cut(s)	518, 546, 571, 791
BssT1I	CCWWGG	2 cut(s)	216, 402
Bst2UI	CCWGG	4 cut(s)	133, 414, 515, 777
Bst4CI	ACNGT	2 cut(s)	37, 614
Bst6I	CTCTTC	2 cut(s)	217, 552
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	6 cut(s)	78, 98, 360, 380, 720, 727
BstDSI	CCRYGG	3 cut(s)	216, 402, 795
BstENI	CCTNNNNNAGG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	4 cut(s)	521, 549, 574, 794
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	4 cut(s)	518, 546, 571, 791
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 470, 640, 683
BstNI	CCWGG	4 cut(s)	133, 414, 515, 777
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	6 cut(s)	131, 345, 346, 412, 513, 775
BstSFI	CTRYAG	2 cut(s)	540, 787
BstV1I	GCAGC	3 cut(s)	32, 153, 526
BstX2I	RGATCY	1 cut(s)	791
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	791
BsuRI	GGCC	1 cut(s)	732
BtgI	CCRYGG	3 cut(s)	216, 402, 795
BtsCI	GGATG	1 cut(s)	356
BtsI	GCAGTG	2 cut(s)	549, 666
BtsIMutI	CAGTG	4 cut(s)	324, 549, 619, 666
Cac8I	GCNNGC	1 cut(s)	636
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	114, 233
Cfr9I	CCCGGG	1 cut(s)	346
CseI	GACGC	1 cut(s)	605
CsiI	ACCWGGT	2 cut(s)	131, 775
Csp6I	GTAC	3 cut(s)	136, 553, 724
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	5 cut(s)	217, 403, 474, 506, 640
CviJI	RGCY	9 cut(s)	5, 63, 128, 144, 203, 269, 670, 732, 746
CviKI_1	RGCY	9 cut(s)	5, 63, 128, 144, 203, 269, 670, 732, 746
CviQI	GTAC	3 cut(s)	136, 553, 724
DdeI	CTNAG	6 cut(s)	78, 98, 360, 380, 720, 727
DpnI	GATC	4 cut(s)	520, 548, 573, 793
DpnII	GATC	4 cut(s)	518, 546, 571, 791
DriI	GACNNNNNGTC	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	217, 552
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EarI	CTCTTC	2 cut(s)	217, 552
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	216, 402
Eco47I	GGWCC	2 cut(s)	114, 233
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	346
EcoNI	CCTNNNNNAGG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	4 cut(s)	131, 412, 513, 775
EcoT14I	CCWWGG	2 cut(s)	216, 402
ErhI	CCWWGG	2 cut(s)	216, 402
FaeI	CATG	5 cut(s)	220, 406, 477, 509, 643
FaiI	YATR	8 cut(s)	20, 183, 218, 297, 404, 475, 507, 641
FatI	CATG	5 cut(s)	216, 402, 473, 505, 639
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	3 cut(s)	46, 142, 540
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	3 cut(s)	46, 142, 540
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	46, 142, 540
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	5 cut(s)	123, 252, 309, 347, 486
HgaI	GACGC	1 cut(s)	605
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	5 cut(s)	220, 406, 477, 509, 643
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	3 cut(s)	338, 459, 757
HpaII	CCGG	5 cut(s)	123, 252, 309, 347, 486
HphI	GGTGA	2 cut(s)	581, 632
Hpy166II	GTNNAC	3 cut(s)	11, 511, 714
Hpy188I	TCNGA	4 cut(s)	279, 361, 458, 610
Hpy188III	TCNNGA	1 cut(s)	486
Hpy8I	GTNNAC	3 cut(s)	11, 511, 714
HpyAV	CCTTC	2 cut(s)	50, 246
HpyCH4III	ACNGT	2 cut(s)	37, 614
HpyCH4V	TGCA	8 cut(s)	288, 368, 440, 500, 542, 643, 659, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 470, 640, 683
HpyF3I	CTNAG	6 cut(s)	78, 98, 360, 380, 720, 727
Hsp92II	CATG	5 cut(s)	220, 406, 477, 509, 643
HspAI	GCGC	1 cut(s)	102
Kpn2I	TCCGGA	1 cut(s)	485
Kzo9I	GATC	4 cut(s)	518, 546, 571, 791
LmnI	GCTCC	4 cut(s)	60, 125, 208, 266
Lsp1109I	GCAGC	3 cut(s)	32, 153, 526
LweI	GCATC	1 cut(s)	664
MabI	ACCWGGT	2 cut(s)	131, 775
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	5 cut(s)	31, 93, 161, 220, 620
MalI	GATC	4 cut(s)	520, 548, 573, 793
MboI	GATC	4 cut(s)	518, 546, 571, 791
MboII	GAAGA	2 cut(s)	204, 569
MflI	RGATCY	1 cut(s)	791
MluCI	AATT	2 cut(s)	766, 802
MnlI	CCTC	9 cut(s)	127, 161, 315, 418, 553, 613, 619, 705, 727
MroI	TCCGGA	1 cut(s)	485
MseI	TTAA	1 cut(s)	72
MspI	CCGG	5 cut(s)	123, 252, 309, 347, 486
MspR9I	CCNGG	6 cut(s)	133, 347, 348, 414, 515, 777
MvaI	CCWGG	4 cut(s)	133, 414, 515, 777
MwoI	GCNNNNNNNGC	4 cut(s)	24, 470, 640, 683
NciI	CCSGG	2 cut(s)	347, 348
NcoI	CCATGG	2 cut(s)	216, 402
NdeII	GATC	4 cut(s)	518, 546, 571, 791
NlaIII	CATG	5 cut(s)	220, 406, 477, 509, 643
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	3 cut(s)	93, 161, 620
NspI	RCATGY	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	338, 459, 757
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	47, 143, 541
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	4 cut(s)	131, 412, 513, 775
PspGI	CCWGG	4 cut(s)	131, 412, 513, 775
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	114, 233
PspPPI	RGGWCCY	1 cut(s)	233
PsrI	GAACNNNNNNTAC	2 cut(s)	515, 547
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	791
RsaI	GTAC	3 cut(s)	137, 554, 725
RsaNI	GTAC	3 cut(s)	136, 553, 724
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	46, 142, 540
Sau3AI	GATC	4 cut(s)	518, 546, 571, 791
Sau96I	GGNCC	2 cut(s)	114, 233
ScaI	AGTACT	1 cut(s)	725
ScrFI	CCNGG	6 cut(s)	133, 347, 348, 414, 515, 777
SexAI	ACCWGGT	2 cut(s)	131, 775
SfaNI	GCATC	1 cut(s)	664
SfcI	CTRYAG	2 cut(s)	540, 787
SinI	GGWCC	2 cut(s)	114, 233
SmaI	CCCGGG	1 cut(s)	348
Sse9I	AATT	2 cut(s)	766, 802
SsiI	CCGC	2 cut(s)	120, 433
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	6 cut(s)	131, 345, 346, 412, 513, 775
StyI	CCWWGG	2 cut(s)	216, 402
TaaI	ACNGT	2 cut(s)	37, 614
TaqI	TCGA	5 cut(s)	375, 521, 527, 549, 704
TasI	AATT	2 cut(s)	766, 802
TatI	WGTACW	1 cut(s)	723
TfiI	GAWTC	3 cut(s)	338, 459, 757
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	4 cut(s)	324, 549, 619, 666
TseFI	GTSAC	3 cut(s)	93, 161, 620
TseI	GCWGC	3 cut(s)	45, 141, 539
Tsp45I	GTSAC	3 cut(s)	93, 161, 620
TspDTI	ATGAA	2 cut(s)	381, 494
TspGWI	ACGGA	2 cut(s)	180, 784
TspMI	CCCGGG	1 cut(s)	346
TspRI	CASTG	4 cut(s)	324, 549, 619, 666
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	114, 233
XagI	CCTNNNNNAGG	1 cut(s)	417
XceI	RCATGY	1 cut(s)	477
XmaI	CCCGGG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.