Prupe.2G274400_v2.0.a1

expansin-B15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0003657
Physical Location & Seq
Forward (+)
27667660 .. 27669298
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G274400.1

Sequence Viewer

Length: 834 bp
ATGCCCACTCTTAATAAGCTACCCTTAGCTGGTTTAAAACCCCTTTGGTACTTAATCACTGTATTTTGCTACTTTAAGCTGTGTTTTGCCGTTAATCGCAAGCACTTAAACTTGTCGACCGCTGCCACCCATTGGGCCCCTGCCGGAGCTACTTGGTATGGCAGCCCTGACGGTGCGGGAAGTGACGGCGGGTCTTGTGGGTATGGAAATTTGGTGTCACAGCCTCCATTCTCTTCTATGATTACTGGGATAGGCCCTTCTCTGTACAAATCAGGCAAGGAATGCGGAGCTTGTTATCAGGTAAAATGTACCAAACATGCATCTTGTTCCGGCAGACCAGTGAGGGTGGTCATCACGGACTTTTGCCCCGGAGGACCTTGTGCATCGGAGCCGGCACATTTCGACCTGAGTGGAACTGCATTTGGTGCCATGGCAAGTCCTGGCCAACAAGAGAAACTACGCGATGCCGGAGTGTTACAAATTCAGTTTGCACGTGTGGCATGTGACTATTCAGGAAAAACCATCGCATTCCACGTGGACCAGGGCTCAAACTCAAACTATTTTGCTGCTGTGATTGAATTTGAGGAGGGAGATGGTGATCTTGCTGGTGTTGAGTTGAAGGAGGCTTCCTCATCGGAAGGTGGTGATGAATGGCGTGCCATGCAACAATCATGGGGTGCAGTGTGGAAACTTGATGCAGGCTCAGAATTGCATCCTCCATTGTCAATAAGGTTGACATCTCAGTATTCAGCCCAAACTTTGCTGGCCAAAGATGTAATTCCAGTTGGGTGGAAACCTGGTGCCACCTATAGATCCTTGGTCAATTATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

278

Amino Acids

29.55

Weight (kDa)

6.58

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 425, 800
AccB7I CCANNNNNTGG 1 cut(s) 132
AccI GTMKAC 1 cut(s) 116
AccII CGCG 1 cut(s) 462
AciI CCGC 4 cut(s) 120, 176, 189, 285
AclWI GGATC 1 cut(s) 807
AcoI YGGCCR 2 cut(s) 442, 765
AcsI RAATTY 3 cut(s) 208, 480, 578
AcvI CACGTG 2 cut(s) 494, 535
AfaI GTAC 3 cut(s) 50, 266, 310
AfiI CCNNNNNNNGG 2 cut(s) 29, 132
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 2 cut(s) 578, 619
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 3 cut(s) 439, 540, 796
AluBI AGCT 5 cut(s) 19, 29, 79, 149, 290
AluI AGCT 5 cut(s) 19, 29, 79, 149, 290
AlwI GGATC 1 cut(s) 807
AoxI GGCC 4 cut(s) 135, 253, 442, 765
ApaI GGGCCC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 122, 162, 566
ApoI RAATTY 3 cut(s) 208, 480, 578
AspS9I GGNCC 5 cut(s) 135, 136, 254, 374, 538
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 608, 656
AvaII GGWCC 2 cut(s) 374, 538
BaeGI GKGCMC 1 cut(s) 139
BalI TGGCCA 2 cut(s) 444, 767
BanI GGYRCC 2 cut(s) 425, 800
BanII GRGCYC 2 cut(s) 139, 548
BbrPI CACGTG 2 cut(s) 494, 535
BbvI GCAGC 3 cut(s) 109, 174, 553
BccI CCATC 2 cut(s) 530, 587
BceAI ACGGC 2 cut(s) 74, 202
BciT130I CCWGG 3 cut(s) 441, 542, 798
BcnI CCSGG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 808
BisI GCNGC 3 cut(s) 123, 163, 567
BlsI GCNGC 3 cut(s) 124, 164, 568
Bme1390I CCNGG 4 cut(s) 369, 441, 542, 798
Bme18I GGWCC 2 cut(s) 374, 538
BmeRI GACNNNNNGTC 1 cut(s) 190
BmgT120I GGNCC 5 cut(s) 135, 136, 254, 374, 538
BmiI GGNNCC 5 cut(s) 137, 138, 390, 427, 802
BmrFI CCNGG 4 cut(s) 369, 441, 542, 798
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 5 cut(s) 329, 392, 454, 685, 721
BmuI ACTGGG 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 614, 646
Bpu10I CCTNAGC 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 369
BsaAI YACGTR 2 cut(s) 494, 535
BsaBI GATNNNNATC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 367, 429, 541, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 132
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 3 cut(s) 250, 338, 782
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 3 cut(s) 441, 542, 798
BseDI CCNNGG 4 cut(s) 367, 429, 541, 816
BseGI GGATG 1 cut(s) 712
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 2 cut(s) 29, 132
BseMII CTCAG 3 cut(s) 398, 717, 755
BseNI ACTGG 3 cut(s) 250, 338, 782
BseRI GAGGAG 1 cut(s) 599
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 3 cut(s) 109, 174, 553
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 4 cut(s) 137, 255, 444, 767
BshNI GGYRCC 2 cut(s) 425, 800
BsiEI CGRYCG 1 cut(s) 120
BsiSI CCGG 5 cut(s) 144, 330, 369, 392, 468
BslI CCNNNNNNNGG 2 cut(s) 29, 132
BsmI GAATGC 2 cut(s) 287, 527
BsnI GGCC 4 cut(s) 137, 255, 444, 767
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 2 cut(s) 139, 548
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 2 cut(s) 598, 812
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 4 cut(s) 120, 176, 189, 285
BspANI GGCC 4 cut(s) 137, 255, 444, 767
BspCNI CTCAG 3 cut(s) 399, 716, 754
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 5 cut(s) 137, 138, 390, 427, 802
BspPI GGATC 1 cut(s) 807
BspT107I GGYRCC 2 cut(s) 425, 800
BsrFI RCCGGY 1 cut(s) 391
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 3 cut(s) 250, 338, 782
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 4 cut(s) 367, 429, 541, 816
BssMI GATC 2 cut(s) 598, 812
BssT1I CCWWGG 2 cut(s) 429, 816
Bst2UI CCWGG 3 cut(s) 441, 542, 798
Bst4CI ACNGT 2 cut(s) 61, 173
Bst6I CTCTTC 1 cut(s) 238
BstAPI GCANNNNNTGC 2 cut(s) 282, 425
BstAUI TGTACA 1 cut(s) 264
BstBAI YACGTR 2 cut(s) 494, 535
BstC8I GCNNGC 5 cut(s) 101, 393, 657, 700, 765
BstDEI CTNAG 4 cut(s) 25, 407, 703, 741
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 712
BstFNI CGCG 1 cut(s) 462
BstKTI GATC 2 cut(s) 601, 815
BstMBI GATC 2 cut(s) 598, 812
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 4 cut(s) 282, 425, 497, 661
BstNI CCWGG 3 cut(s) 441, 542, 798
BstNSI RCATGY 2 cut(s) 320, 504
BstSCI CCNGG 4 cut(s) 367, 439, 540, 796
BstSFI CTRYAG 1 cut(s) 808
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 3 cut(s) 109, 174, 553
BstX2I RGATCY 1 cut(s) 812
BstXI CCANNNNNNTGG 1 cut(s) 789
BstYI RGATCY 1 cut(s) 812
BsuRI GGCC 4 cut(s) 137, 255, 444, 767
BtgI CCRYGG 1 cut(s) 429
BtgZI GCGATG 2 cut(s) 477, 508
BtsCI GGATG 1 cut(s) 712
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 3 cut(s) 57, 345, 687
Cac8I GCNNGC 5 cut(s) 101, 393, 657, 700, 765
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 5 cut(s) 135, 136, 254, 374, 538
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 3 cut(s) 49, 265, 309
CviAII CATG 5 cut(s) 317, 430, 501, 661, 672
CviQI GTAC 3 cut(s) 49, 265, 309
DdeI CTNAG 4 cut(s) 25, 407, 703, 741
DpnI GATC 2 cut(s) 600, 814
DpnII GATC 2 cut(s) 598, 812
DraI TTTAAA 1 cut(s) 36
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 442, 765
Eam1104I CTCTTC 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 429, 816
Eco24I GRGCYC 2 cut(s) 139, 548
Eco47I GGWCC 2 cut(s) 374, 538
Eco72I CACGTG 2 cut(s) 494, 535
EcoO109I RGGNCCY 3 cut(s) 136, 254, 374
EcoRII CCWGG 3 cut(s) 439, 540, 796
EcoT14I CCWWGG 2 cut(s) 429, 816
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 2 cut(s) 139, 548
ErhI CCWWGG 2 cut(s) 429, 816
FaeI CATG 5 cut(s) 320, 433, 504, 664, 675
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 5 cut(s) 316, 429, 500, 660, 671
FauI CCCGC 2 cut(s) 169, 182
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 3 cut(s) 123, 163, 567
FokI GGATG 1 cut(s) 699
FriOI GRGCYC 2 cut(s) 139, 548
Fsp4HI GCNGC 3 cut(s) 123, 163, 567
GluI GCNGC 3 cut(s) 123, 163, 567
HaeIII GGCC 4 cut(s) 137, 255, 444, 767
HapII CCGG 5 cut(s) 144, 330, 369, 392, 468
Hin1II CATG 5 cut(s) 320, 433, 504, 664, 675
HincII GTYRAC 2 cut(s) 117, 735
HindII GTYRAC 2 cut(s) 117, 735
HpaII CCGG 5 cut(s) 144, 330, 369, 392, 468
HphI GGTGA 2 cut(s) 608, 656
Hpy166II GTNNAC 3 cut(s) 117, 538, 735
Hpy188I TCNGA 3 cut(s) 388, 637, 706
Hpy188III TCNNGA 1 cut(s) 513
Hpy8I GTNNAC 3 cut(s) 117, 538, 735
HpyAV CCTTC 3 cut(s) 267, 613, 632
HpyCH4III ACNGT 2 cut(s) 61, 173
HpyCH4IV ACGT 2 cut(s) 493, 534
HpyCH4V TGCA 8 cut(s) 320, 383, 419, 491, 664, 680, 698, 712
HpyF10VI GCNNNNNNNGC 4 cut(s) 282, 425, 497, 661
HpyF3I CTNAG 4 cut(s) 25, 407, 703, 741
HpySE526I ACGT 2 cut(s) 493, 534
Hsp92II CATG 5 cut(s) 320, 433, 504, 664, 675
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 2 cut(s) 598, 812
LmnI GCTCC 3 cut(s) 146, 287, 388
Lsp1109I GCAGC 3 cut(s) 109, 174, 553
LweI GCATC 5 cut(s) 329, 392, 454, 685, 721
MabI ACCWGGT 1 cut(s) 796
MaeII ACGT 2 cut(s) 493, 534
MaeIII GTNAC 4 cut(s) 182, 216, 474, 503
MalI GATC 2 cut(s) 600, 814
MboI GATC 2 cut(s) 598, 812
MboII GAAGA 1 cut(s) 225
MflI RGATCY 1 cut(s) 812
MhlI GDGCHC 2 cut(s) 139, 548
MlsI TGGCCA 2 cut(s) 444, 767
MluCI AATT 6 cut(s) 208, 480, 578, 707, 777, 823
MluNI TGGCCA 2 cut(s) 444, 767
MnlI CCTC 8 cut(s) 234, 336, 365, 577, 580, 616, 640, 726
Mox20I TGGCCA 2 cut(s) 444, 767
Mph1103I ATGCAT 1 cut(s) 322
MroNI GCCGGC 1 cut(s) 391
MscI TGGCCA 2 cut(s) 444, 767
MseI TTAA 6 cut(s) 12, 35, 53, 75, 93, 107
Msp20I TGGCCA 2 cut(s) 444, 767
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 5 cut(s) 144, 330, 369, 392, 468
MspR9I CCNGG 4 cut(s) 369, 441, 542, 798
Mva1269I GAATGC 2 cut(s) 287, 527
MvaI CCWGG 3 cut(s) 441, 542, 798
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 4 cut(s) 282, 425, 497, 661
NaeI GCCGGC 1 cut(s) 393
NciI CCSGG 1 cut(s) 369
NcoI CCATGG 1 cut(s) 429
NdeII GATC 2 cut(s) 598, 812
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 5 cut(s) 320, 433, 504, 664, 675
NlaIV GGNNCC 5 cut(s) 137, 138, 390, 427, 802
NmuCI GTSAC 3 cut(s) 182, 216, 503
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 2 cut(s) 320, 504
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PctI GAATGC 2 cut(s) 287, 527
PdiI GCCGGC 1 cut(s) 393
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 3 cut(s) 124, 164, 568
PmaCI CACGTG 2 cut(s) 494, 535
PmlI CACGTG 2 cut(s) 494, 535
Ppu21I YACGTR 2 cut(s) 494, 535
PpuMI RGGWCCY 1 cut(s) 374
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 3 cut(s) 439, 540, 796
PspCI CACGTG 2 cut(s) 494, 535
PspGI CCWGG 3 cut(s) 439, 540, 796
PspN4I GGNNCC 5 cut(s) 137, 138, 390, 427, 802
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 5 cut(s) 135, 136, 254, 374, 538
PspPPI RGGWCCY 1 cut(s) 374
PsuI RGATCY 1 cut(s) 812
RsaI GTAC 3 cut(s) 50, 266, 310
RsaNI GTAC 3 cut(s) 49, 265, 309
SalI GTCGAC 1 cut(s) 115
SaqAI TTAA 6 cut(s) 12, 35, 53, 75, 93, 107
SatI GCNGC 3 cut(s) 123, 163, 567
Sau3AI GATC 2 cut(s) 598, 812
Sau96I GGNCC 5 cut(s) 135, 136, 254, 374, 538
ScrFI CCNGG 4 cut(s) 369, 441, 542, 798
SduI GDGCHC 2 cut(s) 139, 548
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 5 cut(s) 329, 392, 454, 685, 721
SfcI CTRYAG 1 cut(s) 808
SinI GGWCC 2 cut(s) 374, 538
Sse9I AATT 6 cut(s) 208, 480, 578, 707, 777, 823
SsiI CCGC 4 cut(s) 120, 176, 189, 285
StyD4I CCNGG 4 cut(s) 367, 439, 540, 796
StyI CCWWGG 2 cut(s) 429, 816
TaaI ACNGT 2 cut(s) 61, 173
TaiI ACGT 2 cut(s) 496, 537
TaqI TCGA 2 cut(s) 116, 402
TasI AATT 6 cut(s) 208, 480, 578, 707, 777, 823
TatI WGTACW 1 cut(s) 264
Tru1I TTAA 6 cut(s) 12, 35, 53, 75, 93, 107
Tru9I TTAA 6 cut(s) 12, 35, 53, 75, 93, 107
TscAI CASTG 3 cut(s) 64, 345, 687
TseFI GTSAC 3 cut(s) 182, 216, 503
TseI GCWGC 3 cut(s) 122, 162, 566
Tsp45I GTSAC 3 cut(s) 182, 216, 503
TspDTI ATGAA 1 cut(s) 663
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 3 cut(s) 64, 345, 687
Van91I CCANNNNNTGG 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 374, 538
XapI RAATTY 3 cut(s) 208, 480, 578
XceI RCATGY 2 cut(s) 320, 504
XmiI GTMKAC 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.