Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Forward (+)

20334821 .. 20336637

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27131.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTTACTTCAGTTGGTCCTTCTCTTTACCAATCCGGCAAGGAATGTGGAGCTTGCTATCAGGTCAAATGCACTAAACATAAATCGTGTTCTGGCAAACCAGTGAAGGTGGTCGTCACAGATTCTTGCCTGGGATGTGTGTCTGAATCTGCACACTTCGACCTTAGTGGAAAAGCATTTAGTGCCATGGCACTTCCTGGTCAATGCCAGGAACTACGCAATGCAGGAAAATTGGAAGTCCGATTCGCAAGAGTGGCATGTGATTATCCAGGAAAAACCATTGCATTCCACGTCGACCAGGGATCGAGCGCGTACTACTTTGCTGTAGTGATCGAGTACGAAGAGGGAGATGGTGATGTTGCTAGTGTTCAGTTGAAGGACAGTAAAGGTATCGAGAAGTGGTGTGACATGCAACAATCCTGGGGTGCAGTGTGGAAGCTTGATGCAGGAGGGTCACCACTAAAACCTCCATTGTCATTAAAGGTGACTTCTCAGTACTCAGGGAAGACCTTGTTGGCTGAAAATGTGATTCCAACAAATTGGCAGCCTGGTTGTAGCTACAGATCCGTGGTCAAGCACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

195

Amino Acids

20.93

Weight (kDa)

8.28

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	5 - 81	1.8e-17	Lytic transglycolase
Expansin_C	PF01357	94 - 178	5.4e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	311
AclWI	GGATC	2 cut(s)	310, 558
AfaI	GTAC	3 cut(s)	314, 338, 497
AgsI	TTSAA	1 cut(s)	376
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	7 cut(s)	129, 196, 207, 268, 297, 419, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	3 cut(s)	53, 439, 558
AluI	AGCT	3 cut(s)	53, 439, 558
AlwI	GGATC	2 cut(s)	310, 558
ApeKI	GCWGC	1 cut(s)	544
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	365, 447, 496
AvaII	GGWCC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	512
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	7 cut(s)	131, 198, 209, 270, 299, 421, 549
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	2 cut(s)	324, 559
BisI	GCNGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	546
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	7 cut(s)	131, 198, 209, 270, 299, 421, 549
Bme18I	GGWCC	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	17
BmrFI	CCNGG	7 cut(s)	131, 198, 209, 270, 299, 421, 549
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	512
BsaJI	CCNNGG	5 cut(s)	130, 186, 298, 420, 567
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	2 cut(s)	226, 279
BseBI	CCWGG	7 cut(s)	131, 198, 209, 270, 299, 421, 549
BseDI	CCNNGG	5 cut(s)	130, 186, 298, 420, 567
BseGI	GGATG	1 cut(s)	140
BseMI	GCAATG	2 cut(s)	226, 279
BseMII	CTCAG	2 cut(s)	506, 513
BseNI	ACTGG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	556
BsgI	GTGCAG	2 cut(s)	135, 447
Bsh1236I	CGCG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	302, 330, 563
Bsp19I	CCATGG	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	505, 512
BspFNI	CGCG	1 cut(s)	311
BspPI	GGATC	2 cut(s)	310, 558
BsrDI	GCAATG	2 cut(s)	226, 279
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	5 cut(s)	130, 186, 298, 420, 567
BssMI	GATC	3 cut(s)	302, 330, 563
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	7 cut(s)	131, 198, 209, 270, 299, 421, 549
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	336
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	3 cut(s)	164, 492, 499
BstDSI	CCRYGG	2 cut(s)	186, 567
BstEII	GGTNACC	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	3 cut(s)	305, 333, 566
BstMBI	GATC	3 cut(s)	302, 330, 563
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 254
BstNI	CCWGG	7 cut(s)	131, 198, 209, 270, 299, 421, 549
BstNSI	RCATGY	2 cut(s)	261, 412
BstPI	GGTNACC	1 cut(s)	453
BstSCI	CCNGG	7 cut(s)	129, 196, 207, 268, 297, 419, 547
BstSFI	CTRYAG	2 cut(s)	324, 559
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	563
BstXI	CCANNNNNNTGG	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	563
BtgI	CCRYGG	2 cut(s)	186, 567
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	108, 435
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	313, 337, 496
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	3 cut(s)	187, 258, 409
CviJI	RGCY	5 cut(s)	53, 439, 518, 547, 558
CviKI_1	RGCY	5 cut(s)	53, 439, 518, 547, 558
CviQI	GTAC	3 cut(s)	313, 337, 496
DdeI	CTNAG	3 cut(s)	164, 492, 499
DpnI	GATC	3 cut(s)	304, 332, 565
DpnII	GATC	3 cut(s)	302, 330, 563
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	453
EcoO65I	GGTNACC	1 cut(s)	453
EcoRII	CCWGG	7 cut(s)	129, 196, 207, 268, 297, 419, 547
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	190, 261, 412
FaiI	YATR	4 cut(s)	81, 188, 259, 410
FatI	CATG	3 cut(s)	186, 257, 408
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	545
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	545
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	1 cut(s)	545
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	190, 261, 412
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	4 cut(s)	122, 146, 243, 529
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	3 cut(s)	365, 447, 496
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	145, 242
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	3 cut(s)	30, 100, 370
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	72, 152, 224, 284, 412, 428, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 254
HpyF3I	CTNAG	3 cut(s)	164, 492, 499
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	190, 261, 412
HspAI	GCGC	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	302, 330, 563
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	5 cut(s)	4, 115, 404, 453, 484
MalI	GATC	3 cut(s)	304, 332, 565
MboI	GATC	3 cut(s)	302, 330, 563
MboII	GAAGA	2 cut(s)	353, 517
MflI	RGATCY	1 cut(s)	563
MluCI	AATT	2 cut(s)	230, 538
MmeI	TCCRAC	1 cut(s)	557
MnlI	CCTC	3 cut(s)	337, 443, 477
MseI	TTAA	1 cut(s)	479
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	7 cut(s)	131, 198, 209, 270, 299, 421, 549
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	7 cut(s)	131, 198, 209, 270, 299, 421, 549
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	182, 254
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	302, 330, 563
NlaIII	CATG	3 cut(s)	190, 261, 412
NmuCI	GTSAC	4 cut(s)	115, 404, 453, 484
NspI	RCATGY	2 cut(s)	261, 412
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	122, 146, 243, 529
PfoI	TCCNGGA	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	546
Psp6I	CCWGG	7 cut(s)	129, 196, 207, 268, 297, 419, 547
PspEI	GGTNACC	1 cut(s)	453
PspGI	CCWGG	7 cut(s)	129, 196, 207, 268, 297, 419, 547
PspPI	GGNCC	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	563
RsaI	GTAC	3 cut(s)	314, 338, 497
RsaNI	GTAC	3 cut(s)	313, 337, 496
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	1 cut(s)	545
Sau3AI	GATC	3 cut(s)	302, 330, 563
Sau96I	GGNCC	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	497
ScrFI	CCNGG	7 cut(s)	131, 198, 209, 270, 299, 421, 549
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	2 cut(s)	324, 559
SinI	GGWCC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	230, 538
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	7 cut(s)	129, 196, 207, 268, 297, 419, 547
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	5 cut(s)	159, 294, 305, 333, 393
TasI	AATT	2 cut(s)	230, 538
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	4 cut(s)	122, 146, 243, 529
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	2 cut(s)	108, 435
TseFI	GTSAC	4 cut(s)	115, 404, 453, 484
TseI	GCWGC	1 cut(s)	544
Tsp45I	GTSAC	4 cut(s)	115, 404, 453, 484
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	2 cut(s)	108, 435
VpaK11BI	GGWCC	1 cut(s)	17
XceI	RCATGY	2 cut(s)	261, 412
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.