FvH4_2g16510

Belongs to the expansin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
14410982 .. 14412662
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16510.t1

Sequence Viewer

Length: 816 bp
ATGGCAACTAGTTTGAGAAGCACTTTGTTCTTAGTAACTATGTTTTGCTGCTTGTTTGAGGAGTACTACTGCTTCGCCCATAATTACAACCACTTTAACTCGTCGTCTCAGCGGTCTCGCATTGCCACCAATTGGTACTATGCCGGAGCTACCTGGTACGGCGGCCCTGATGGGTTCGGAAGTGATGGAGGGTCTTGTGGGTATAGAGATATAGTTTCACGACCTCCATTCTCTTCCATGGTTACTGCAGTTGGCCCTTCTCTTTACCAATCTGGCAAGGAATGTGGAGCTTGCTTTCTGGTCAAATGCACCAGACACAAATCTTGTTCTGGCAAACCAGTGAGGGTGGTCATCACAGATTCTTGCCCGGGATGTGTGTCTGATTCTGCTCACTTCGACCTTAGTGGCTCTGCATTTGGTGCCATGGCACTTCCTGGTCAAGCCCAGAACCTCCGCAATGCAGGAGTGTTGCAAATCAAATTTGCACGCGTGCCATGTAATTATTTAGGAAAAACCATCGAATTTTACGTGGATCAGGGCTCGAACCCGTACTACTTTGCTGTTGTGGTCCAATATGAAGAGGGAGATGGTGATCTTGGTTATGTTGAGTTGAAGGACAGCAGCAACAAAGGGTGGCGTGCCATGCAACGATCATGGGGTGCAGTGTGGAAACTTGATGCAGGATCGAAACTACAGCCTCCACTGTCAATCAGAATGATTTCTCGACACTCAGGCCACGCCTTGGTAGCCAAAAATGTGATTCCAAATGGGTGGCAGCCTGGTGCTACATACAGATCCTTGGTCAATTATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

272

Amino Acids

29.75

Weight (kDa)

8.82

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 83 - 160 4.5e-17 Lytic transglycolase
Expansin_C PF01357 173 - 255 1.5e-24 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 419
AccB7I CCANNNNNTGG 2 cut(s) 132, 742
AccII CGCG 1 cut(s) 489
AciI CCGC 3 cut(s) 112, 162, 454
AclWI GGATC 3 cut(s) 540, 691, 789
AcsI RAATTY 2 cut(s) 479, 521
AfaI GTAC 4 cut(s) 65, 137, 158, 551
AfiI CCNNNNNNNGG 2 cut(s) 132, 742
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 1 cut(s) 613
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 3 cut(s) 152, 433, 778
AluBI AGCT 2 cut(s) 149, 290
AluI AGCT 2 cut(s) 149, 290
Alw26I GTCTC 2 cut(s) 111, 120
AlwI GGATC 3 cut(s) 540, 691, 789
Ama87I CYCGRG 1 cut(s) 367
AoxI GGCC 3 cut(s) 163, 253, 733
ApeKI GCWGC 3 cut(s) 48, 621, 775
ApoI RAATTY 2 cut(s) 479, 521
Asp700I GAANNNNTTC 1 cut(s) 718
AspS9I GGNCC 3 cut(s) 164, 254, 568
AsuC2I CCSGG 2 cut(s) 368, 369
AsuHPI GGTGA 1 cut(s) 602
AvaI CYCGRG 1 cut(s) 367
AvaII GGWCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 542
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbvI GCAGC 3 cut(s) 35, 633, 787
BccI CCATC 4 cut(s) 164, 179, 524, 581
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 3 cut(s) 154, 435, 780
BcnI CCSGG 2 cut(s) 368, 369
BcoDI GTCTC 2 cut(s) 111, 120
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 246, 692
BisI GCNGC 4 cut(s) 49, 163, 622, 776
BlsI GCNGC 4 cut(s) 50, 164, 623, 777
BmcAI AGTACT 1 cut(s) 65
Bme1390I CCNGG 5 cut(s) 154, 368, 369, 435, 780
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 1 cut(s) 367
BmgT120I GGNCC 3 cut(s) 164, 254, 568
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 5 cut(s) 154, 368, 369, 435, 780
BmsI GCATC 1 cut(s) 667
BpuMI CCSGG 2 cut(s) 368, 369
BsaAI YACGTR 1 cut(s) 529
BsaBI GATNNNNATC 1 cut(s) 591
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 5 cut(s) 237, 367, 423, 741, 798
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 742
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 2 cut(s) 120, 463
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 3 cut(s) 154, 435, 780
BseDI CCNNGG 5 cut(s) 237, 367, 423, 741, 798
BseGI GGATG 1 cut(s) 377
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 2 cut(s) 132, 742
BseMI GCAATG 2 cut(s) 120, 463
BseMII CTCAG 2 cut(s) 122, 744
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 3 cut(s) 35, 633, 787
BsgI GTGCAG 1 cut(s) 681
Bsh1236I CGCG 1 cut(s) 489
BshFI GGCC 3 cut(s) 165, 255, 735
BshNI GGYRCC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 2 cut(s) 144, 368
BslI CCNNNNNNNGG 2 cut(s) 132, 742
BsmAI GTCTC 2 cut(s) 111, 120
BsmBI CGTCTC 1 cut(s) 111
BsnI GGCC 3 cut(s) 165, 255, 735
Bso31I GGTCTC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 5 cut(s) 532, 592, 650, 683, 794
Bsp19I CCATGG 2 cut(s) 237, 423
BspACI CCGC 3 cut(s) 112, 162, 454
BspANI GGCC 3 cut(s) 165, 255, 735
BspCNI CTCAG 2 cut(s) 121, 743
BspFNI CGCG 1 cut(s) 489
BspLI GGNNCC 1 cut(s) 421
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 3 cut(s) 540, 691, 789
BspT107I GGYRCC 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 2 cut(s) 120, 463
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 5 cut(s) 237, 367, 423, 741, 798
BssMI GATC 5 cut(s) 532, 592, 650, 683, 794
BssT1I CCWWGG 4 cut(s) 237, 423, 741, 798
Bst2UI CCWGG 3 cut(s) 154, 435, 780
Bst4CI ACNGT 1 cut(s) 705
Bst6I CTCTTC 2 cut(s) 238, 573
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 529
BstC8I GCNNGC 4 cut(s) 292, 487, 491, 639
BstDEI CTNAG 4 cut(s) 31, 108, 401, 730
BstDSI CCRYGG 2 cut(s) 237, 423
BstF5I GGATG 1 cut(s) 377
BstFNI CGCG 1 cut(s) 489
BstKTI GATC 5 cut(s) 535, 595, 653, 686, 797
BstMAI GTCTC 2 cut(s) 111, 120
BstMBI GATC 5 cut(s) 532, 592, 650, 683, 794
BstMWI GCNNNNNNNGC 3 cut(s) 419, 643, 746
BstNI CCWGG 3 cut(s) 154, 435, 780
BstSCI CCNGG 5 cut(s) 152, 366, 367, 433, 778
BstSFI CTRYAG 2 cut(s) 246, 692
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 3 cut(s) 35, 633, 787
BstX2I RGATCY 1 cut(s) 794
BstXI CCANNNNNNTGG 1 cut(s) 771
BstYI RGATCY 1 cut(s) 794
BsuRI GGCC 3 cut(s) 165, 255, 735
BtgI CCRYGG 2 cut(s) 237, 423
BtsCI GGATG 1 cut(s) 377
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 3 cut(s) 345, 669, 701
Cac8I GCNNGC 4 cut(s) 292, 487, 491, 639
Cfr13I GGNCC 3 cut(s) 164, 254, 568
Cfr9I CCCGGG 1 cut(s) 367
CsiI ACCWGGT 1 cut(s) 152
Csp6I GTAC 4 cut(s) 64, 136, 157, 550
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 5 cut(s) 238, 424, 495, 643, 654
CviQI GTAC 4 cut(s) 64, 136, 157, 550
DdeI CTNAG 4 cut(s) 31, 108, 401, 730
DpnI GATC 5 cut(s) 534, 594, 652, 685, 796
DpnII GATC 5 cut(s) 532, 592, 650, 683, 794
Eam1104I CTCTTC 2 cut(s) 238, 573
EarI CTCTTC 2 cut(s) 238, 573
Eco130I CCWWGG 4 cut(s) 237, 423, 741, 798
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 568
Eco88I CYCGRG 1 cut(s) 367
EcoRII CCWGG 3 cut(s) 152, 433, 778
EcoT14I CCWWGG 4 cut(s) 237, 423, 741, 798
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 4 cut(s) 237, 423, 741, 798
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 5 cut(s) 241, 427, 498, 646, 657
FatI CATG 5 cut(s) 237, 423, 494, 642, 653
Fnu4HI GCNGC 4 cut(s) 49, 163, 622, 776
FokI GGATG 1 cut(s) 384
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 4 cut(s) 49, 163, 622, 776
FspBI CTAG 1 cut(s) 9
GluI GCNGC 4 cut(s) 49, 163, 622, 776
HaeIII GGCC 3 cut(s) 165, 255, 735
HapII CCGG 2 cut(s) 144, 368
Hin1II CATG 5 cut(s) 241, 427, 498, 646, 657
HinfI GANTC 3 cut(s) 359, 383, 760
HpaII CCGG 2 cut(s) 144, 368
HphI GGTGA 1 cut(s) 602
Hpy188I TCNGA 3 cut(s) 179, 382, 713
Hpy188III TCNNGA 2 cut(s) 219, 723
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 267, 607
HpyCH4III ACNGT 1 cut(s) 705
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 9 cut(s) 248, 309, 413, 461, 472, 485, 646, 662, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 643, 746
HpyF3I CTNAG 4 cut(s) 31, 108, 401, 730
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 5 cut(s) 241, 427, 498, 646, 657
Kzo9I GATC 5 cut(s) 532, 592, 650, 683, 794
LmnI GCTCC 2 cut(s) 146, 287
Lsp1109I GCAGC 3 cut(s) 35, 633, 787
LweI GCATC 1 cut(s) 667
MabI ACCWGGT 1 cut(s) 152
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 2 cut(s) 34, 241
MalI GATC 5 cut(s) 534, 594, 652, 685, 796
MboI GATC 5 cut(s) 532, 592, 650, 683, 794
MboII GAAGA 2 cut(s) 225, 590
MfeI CAATTG 1 cut(s) 130
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 6 cut(s) 82, 130, 479, 499, 521, 805
MluI ACGCGT 1 cut(s) 487
MnlI CCTC 7 cut(s) 52, 182, 234, 336, 461, 574, 708
MroXI GAANNNNTTC 1 cut(s) 718
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 2 cut(s) 144, 368
MspR9I CCNGG 5 cut(s) 154, 368, 369, 435, 780
MunI CAATTG 1 cut(s) 130
MvaI CCWGG 3 cut(s) 154, 435, 780
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 3 cut(s) 419, 643, 746
NciI CCSGG 2 cut(s) 368, 369
NcoI CCATGG 2 cut(s) 237, 423
NdeII GATC 5 cut(s) 532, 592, 650, 683, 794
NlaIII CATG 5 cut(s) 241, 427, 498, 646, 657
NlaIV GGNNCC 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 718
PfeI GAWTC 3 cut(s) 359, 383, 760
PflMI CCANNNNNTGG 2 cut(s) 132, 742
PkrI GCNGC 4 cut(s) 50, 164, 623, 777
Ppu21I YACGTR 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 152, 433, 778
PspGI CCWGG 3 cut(s) 152, 433, 778
PspN4I GGNNCC 1 cut(s) 421
PspPI GGNCC 3 cut(s) 164, 254, 568
PsrI GAACNNNNNNTAC 2 cut(s) 536, 568
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 794
RsaI GTAC 4 cut(s) 65, 137, 158, 551
RsaNI GTAC 4 cut(s) 64, 136, 157, 550
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 4 cut(s) 49, 163, 622, 776
Sau3AI GATC 5 cut(s) 532, 592, 650, 683, 794
Sau96I GGNCC 3 cut(s) 164, 254, 568
ScaI AGTACT 1 cut(s) 65
ScrFI CCNGG 5 cut(s) 154, 368, 369, 435, 780
SduI GDGCHC 1 cut(s) 542
SetI ASST 7 cut(s) 151, 155, 226, 292, 402, 453, 531
SexAI ACCWGGT 1 cut(s) 152
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 2 cut(s) 246, 692
SinI GGWCC 1 cut(s) 568
SmaI CCCGGG 1 cut(s) 369
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 6 cut(s) 82, 130, 479, 499, 521, 805
SsiI CCGC 3 cut(s) 112, 162, 454
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 5 cut(s) 152, 366, 367, 433, 778
StyI CCWWGG 4 cut(s) 237, 423, 741, 798
TaaI ACNGT 1 cut(s) 705
TaiI ACGT 1 cut(s) 531
TaqI TCGA 5 cut(s) 396, 519, 542, 686, 724
TasI AATT 6 cut(s) 82, 130, 479, 499, 521, 805
TatI WGTACW 1 cut(s) 63
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 3 cut(s) 359, 383, 760
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 3 cut(s) 345, 669, 708
TseI GCWGC 3 cut(s) 48, 621, 775
TspDTI ATGAA 1 cut(s) 591
TspMI CCCGGG 1 cut(s) 367
TspRI CASTG 3 cut(s) 345, 669, 708
Van91I CCANNNNNTGG 2 cut(s) 132, 742
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 2 cut(s) 479, 521
XmaI CCCGGG 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 718
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.