Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Forward (+)

10245168 .. 10246700

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTCTTGTTGTTCCCCACTCGTTGCCTATCTACGCTCTTGTGACATTGGTTATAGTTCTTCTAAACCTAAACCCTAGTTCTTGCTTCAACCCCAAACTCTTCAATGTCTCGAGGCTTCAGTCTGACTCGGACTGGGCTGCGGCAGTTGCGACATGGTATGGAGACCCCGAGGGTGGTGGCACTGATGGAGGTGCGTGCGCTTATGCAAATGCTGTAGATCAGCCTCCGTTTTCTAAATTAGTTTCTGCCGGTGGAGCGTCATTGTTCAAATCAGGCAAAGGATGTGGAGCTTGTTATGAGGTCAAGTGCACCGGTAATGCTGCGTGCTCCGGTAATCCTGTGACTGTTGTTATAACCGATAACTGCCCCGGAGGTCCGTGTGCTTCGGATGCTGTTCATTTTGATTTGAGTGGCCATGCTTTTGGAGCCATGGCCGAATCTGGTGAAGAATCTGAACTACGGAATGCTGGAGTCCTTCAGGTTCAACATAGAAGAGTGCTGTGCGTTTATGGTGGTGTGGACGTAGCCTTCAGAGTGGACACGGGTTCAAACCCTTACTACTTTGCTGTTGTAGTAGAATATGAAGCTGGACCTGGTGCCCTATCCGCACTTGAGCTCAAACAAGGTAACTCAGACTGGCTTCCCATGCAGGAATCTTGGGGTGCAGATTGGAAGTTTAACTCCGGCTCACAGTTGCAGGGACCGTTATCTATAAGACTAATTGCAGACTCCGGCCAAACCCTGGTTGCGAATGATGTGATTCCGGTTGGCTGGCAACCCGGTCAAACTTATCGCTCGGTTGTCAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

272

Amino Acids

28.39

Weight (kDa)

4.7

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	83 - 163	8.2e-18	Lytic transglycolase
Expansin_C	PF01357	176 - 256	6.2e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	599
AccB7I	CCANNNNNTGG	1 cut(s)	745
AciI	CCGC	2 cut(s)	143, 609
AcoI	YGGCCR	3 cut(s)	415, 435, 736
AcuI	CTGAAG	3 cut(s)	104, 464, 517
AfiI	CCNNNNNNNGG	2 cut(s)	176, 745
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	91, 106, 271, 488, 552
AjnI	CCWGG	2 cut(s)	595, 744
AluBI	AGCT	3 cut(s)	293, 590, 619
AluI	AGCT	3 cut(s)	293, 590, 619
Alw21I	GWGCWC	3 cut(s)	314, 332, 621
Alw26I	GTCTC	2 cut(s)	115, 159
Alw44I	GTGCAC	1 cut(s)	310
Ama87I	CYCGRG	2 cut(s)	112, 170
AoxI	GGCC	3 cut(s)	415, 435, 736
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	140, 323
AsiGI	ACCGGT	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	377, 593, 704
AsuC2I	CCSGG	2 cut(s)	372, 783
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	2 cut(s)	112, 170
AvaII	GGWCC	3 cut(s)	377, 593, 704
BaeGI	GKGCMC	2 cut(s)	314, 604
BalI	TGGCCA	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	621
Bbv12I	GWGCWC	3 cut(s)	314, 332, 621
BbvI	GCAGC	2 cut(s)	127, 310
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	597, 746
BcnI	CCSGG	2 cut(s)	372, 783
BcoDI	GTCTC	2 cut(s)	115, 159
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	141, 144, 324
BlsI	GCNGC	3 cut(s)	142, 145, 325
Bme1390I	CCNGG	4 cut(s)	372, 597, 746, 783
Bme18I	GGWCC	3 cut(s)	377, 593, 704
BmeT110I	CYCGRG	2 cut(s)	112, 170
BmgT120I	GGNCC	3 cut(s)	377, 593, 704
BmiI	GGNNCC	3 cut(s)	430, 601, 705
BmrFI	CCNGG	4 cut(s)	372, 597, 746, 783
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	2 cut(s)	372, 783
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	171, 370, 432, 744
BsaWI	WCCGGW	3 cut(s)	314, 332, 766
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 745
Bse118I	RCCGGY	2 cut(s)	251, 314
Bse1I	ACTGG	2 cut(s)	140, 644
BseBI	CCWGG	2 cut(s)	597, 746
BseDI	CCNNGG	4 cut(s)	171, 370, 432, 744
BseGI	GGATG	2 cut(s)	290, 397
BseLI	CCNNNNNNNGG	2 cut(s)	176, 745
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	2 cut(s)	140, 644
BseSI	GKGCMC	2 cut(s)	314, 604
BseXI	GCAGC	2 cut(s)	127, 310
BsgI	GTGCAG	1 cut(s)	687
BshFI	GGCC	3 cut(s)	417, 437, 738
BshNI	GGYRCC	1 cut(s)	599
BshTI	ACCGGT	1 cut(s)	314
BsiHKAI	GWGCWC	3 cut(s)	314, 332, 621
BsiHKCI	CYCGRG	2 cut(s)	112, 170
BsiSI	CCGG	8 cut(s)	252, 315, 333, 372, 687, 735, 767, 783
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	2 cut(s)	176, 745
BsmAI	GTCTC	2 cut(s)	115, 159
BsmFI	GGGAC	1 cut(s)	717
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	417, 437, 738
Bso31I	GGTCTC	1 cut(s)	159
BsoBI	CYCGRG	2 cut(s)	112, 170
Bsp1286I	GDGCHC	4 cut(s)	314, 332, 604, 621
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	2 cut(s)	143, 609
BspANI	GGCC	3 cut(s)	417, 437, 738
BspCNI	CTCAG	1 cut(s)	647
BspLI	GGNNCC	3 cut(s)	430, 601, 705
BspT107I	GGYRCC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	159
BsrFI	RCCGGY	2 cut(s)	251, 314
BsrI	ACTGG	2 cut(s)	140, 644
BssAI	RCCGGY	2 cut(s)	251, 314
BssECI	CCNNGG	4 cut(s)	171, 370, 432, 744
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	597, 746
Bst4CI	ACNGT	3 cut(s)	349, 696, 708
Bst6I	CTCTTC	2 cut(s)	107, 490
BstC8I	GCNNGC	3 cut(s)	199, 328, 776
BstDEI	CTNAG	1 cut(s)	634
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	290, 397
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	2 cut(s)	115, 159
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 257, 392, 428, 608, 649
BstNI	CCWGG	2 cut(s)	597, 746
BstSCI	CCNGG	4 cut(s)	370, 595, 744, 781
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	2 cut(s)	314, 604
BstV1I	GCAGC	2 cut(s)	127, 310
BstXI	CCANNNNNNTGG	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	417, 437, 738
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	290, 397
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	3 cut(s)	199, 328, 776
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	2 cut(s)	251, 314
Cfr13I	GGNCC	3 cut(s)	377, 593, 704
CseI	GACGC	1 cut(s)	249
CsiI	ACCWGGT	1 cut(s)	595
CspAI	ACCGGT	1 cut(s)	314
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	4 cut(s)	156, 419, 433, 649
DdeI	CTNAG	1 cut(s)	634
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	3 cut(s)	415, 435, 736
Eam1104I	CTCTTC	2 cut(s)	107, 490
EarI	CTCTTC	2 cut(s)	107, 490
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	377, 593, 704
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	3 cut(s)	104, 464, 517
Eco88I	CYCGRG	2 cut(s)	112, 170
EcoICRI	GAGCTC	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	595, 744
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	4 cut(s)	159, 422, 436, 652
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	4 cut(s)	155, 418, 432, 648
Fnu4HI	GCNGC	3 cut(s)	141, 144, 324
FokI	GGATG	2 cut(s)	297, 404
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	3 cut(s)	141, 144, 324
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	3 cut(s)	141, 144, 324
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	417, 437, 738
HapII	CCGG	8 cut(s)	252, 315, 333, 372, 687, 735, 767, 783
HgaI	GACGC	1 cut(s)	249
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	159, 422, 436, 652
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	7 cut(s)	128, 440, 452, 474, 656, 731, 763
HpaII	CCGG	8 cut(s)	252, 315, 333, 372, 687, 735, 767, 783
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	4 cut(s)	312, 523, 541, 808
Hpy188I	TCNGA	6 cut(s)	127, 133, 391, 457, 536, 637
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	4 cut(s)	312, 523, 541, 808
HpyAV	CCTTC	2 cut(s)	488, 541
HpyCH4III	ACNGT	3 cut(s)	349, 696, 708
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	6 cut(s)	209, 312, 652, 668, 700, 728
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 257, 392, 428, 608, 649
HpyF3I	CTNAG	1 cut(s)	634
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	4 cut(s)	159, 422, 436, 652
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	4 cut(s)	257, 290, 335, 428
Lsp1109I	GCAGC	2 cut(s)	127, 310
LweI	GCATC	1 cut(s)	382
MabI	ACCWGGT	1 cut(s)	595
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	43, 343, 629
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	4 cut(s)	53, 94, 461, 507
MhlI	GDGCHC	4 cut(s)	314, 332, 604, 621
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	2 cut(s)	239, 723
MluNI	TGGCCA	1 cut(s)	417
MlyI	GAGTC	3 cut(s)	122, 483, 725
MnlI	CCTC	6 cut(s)	108, 166, 185, 237, 295, 368
Mox20I	TGGCCA	1 cut(s)	417
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	417
MspI	CCGG	8 cut(s)	252, 315, 333, 372, 687, 735, 767, 783
MspR9I	CCNGG	4 cut(s)	372, 597, 746, 783
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	2 cut(s)	597, 746
MwoI	GCNNNNNNNGC	6 cut(s)	149, 257, 392, 428, 608, 649
NciI	CCSGG	2 cut(s)	372, 783
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	4 cut(s)	159, 422, 436, 652
NlaIV	GGNNCC	3 cut(s)	430, 601, 705
NmuCI	GTSAC	2 cut(s)	43, 343
PaeR7I	CTCGAG	1 cut(s)	112
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	4 cut(s)	440, 452, 656, 763
PflMI	CCANNNNNTGG	1 cut(s)	745
PinAI	ACCGGT	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	142, 145, 325
PleI	GAGTC	3 cut(s)	122, 482, 725
PpsI	GAGTC	3 cut(s)	122, 482, 725
PsiI	TTATAA	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	595, 744
PspGI	CCWGG	2 cut(s)	595, 744
PspN4I	GGNNCC	3 cut(s)	430, 601, 705
PspPI	GGNCC	3 cut(s)	377, 593, 704
SacI	GAGCTC	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	3 cut(s)	141, 144, 324
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	3 cut(s)	377, 593, 704
SchI	GAGTC	3 cut(s)	122, 483, 725
ScrFI	CCNGG	4 cut(s)	372, 597, 746, 783
SduI	GDGCHC	4 cut(s)	314, 332, 604, 621
SexAI	ACCWGGT	1 cut(s)	595
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	3 cut(s)	377, 593, 704
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	112, 614
SmoI	CTYRAG	2 cut(s)	112, 614
Sse9I	AATT	2 cut(s)	239, 723
SsiI	CCGC	2 cut(s)	143, 609
SspMI	CTAG	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	4 cut(s)	370, 595, 744, 781
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	349, 696, 708
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	1 cut(s)	113
TasI	AATT	2 cut(s)	239, 723
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	4 cut(s)	440, 452, 656, 763
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	43, 343
TseI	GCWGC	2 cut(s)	140, 323
Tsp45I	GTSAC	2 cut(s)	43, 343
TspDTI	ATGAA	2 cut(s)	389, 600
TspGWI	ACGGA	3 cut(s)	219, 369, 478
TspRI	CASTG	1 cut(s)	190
Van91I	CCANNNNNTGG	1 cut(s)	745
VneI	GTGCAC	1 cut(s)	310
VpaK11BI	GGWCC	3 cut(s)	377, 593, 704
XhoI	CTCGAG	1 cut(s)	112
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.