Rorug01G0198300

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003657
Physical Location & Seq
Reverse (-)
27782083 .. 27787958
5876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0198300.1

Sequence Viewer

Length: 1347 bp
ATGAGAGTGAAAGGAGGAGGGAGGAAGAAAAGCTGGGAAGCAATGCCTGTAGACGACGGGGGTCTGCTTTTTCAAGACACGGACCCAAACGACGCCGCTTTTGCTTTACCGGAAAACCAAGTCACTGAGCCACAGCCGGAAATTGAACCGGAGAAAAACCAAAACCACGACGAGGCTCAGGCCGTGGAGGACGGTGACGGCGAGGGAGAGGAGGGGGACGGGGAGGAAGGGGAAGAAGAGGCTGAGGCCGAGGATGAGAATAAGGAGCGGAGTACTAAGCTTGATGACGGTTTCTATGAAATCGAAGCCATTCGCCGCAAAAGGGTTCGAAAGGGTCAGCTGCAGTATCTCATAAAATGGCGTGGCTGGCCAGAGACAGCCAATACATGGGAACCCTTGGAGAACCTCCAGTCTGTCTCTGATGTTATAGATGCGTTTGAAGAAAGTTTGCGTACTGGAAAGCAACGGAAGCGAAAGCGCAAGTCTGGGACTCCTCATACTCAACCTAAGAAGAAGCAGCAGCAGCAGCGTTCTACAGACACTATCTACAATGCGACAGATGGGGAAATAAGCAATGCTGATAAAGCTTTATCATCTAGTGCTCTCAATGGCTCAGGGGTGGATGTTCTTCCTCCCCCTCAACAGATTTTCCAGTCAGTTGGTGATGGAGAGGATAACGGGCGTGTCAATAATACTGAAACAGCAAAGAAAATTGATTCTGAGAACTTTTGTGCAAATGGTTCCCAACAAATTAGTGAAAGGAGAGAGGAAAATGAGTATGATCCAAAACTTAGTGAGCTCAAAGCAACAGGATCTACTAACACTGTCAGTTCAGATAAACTTTCTGTACATTTCCAAGAAGCCAAAGCTCTGGAAGTTAATGGCCCTACAAATGGTCTTTCCAAGGTTGATTGTGGAGAACCAGTACAGGGCAGTCGCAGTACTGGAGCTAAGAGAAGGAAGTCTGGTTCTGTGAAGAGGTTTAAACAAGAAGCACAAGTGTCTGAACTGGGTGCTACACAAAATGCACCAACTCGAGTTAGCACGAGATATGCTGGTAGAGTTGATCAAACTGGGGTAGAAAATCTTGATTATGCTGGGGAAAATTCAGGTCGCAAGAATAAGATTGATGAATGCAAAGAAGCAGTGCGCATCACCAAGATTCTCAAGCCAATGGGCTATTCAACTTCGATATCAAACAATGTCCAGGACGTGTCCGTTACTTTTATGGCCATGAGGTCTGATGGCACAGAAGTGATAGTGGATAACAAATTTCTCAAGGTCAATCATCCACTTCTGCTGATTAATTTCTATGAGCAACATCTCCGGTACAGTCCTGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

448

Amino Acids

49.68

Weight (kDa)

5.12

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chromo PF00385 99 - 148 6.7e-17 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1151
AccB7I CCANNNNNTGG 1 cut(s) 387
AccBSI CCGCTC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 51
AciI CCGC 3 cut(s) 96, 268, 316
AclWI GGATC 2 cut(s) 776, 820
AcoI YGGCCR 2 cut(s) 368, 1230
AcsI RAATTY 2 cut(s) 1105, 1271
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 6 cut(s) 274, 454, 849, 927, 943, 1331
AfiI CCNNNNNNNGG 5 cut(s) 172, 322, 387, 893, 929
AflIII ACRYGT 1 cut(s) 1212
AgsI TTSAA 4 cut(s) 74, 146, 440, 1185
AjiI CACGTC 1 cut(s) 1213
AjnI CCWGG 1 cut(s) 1206
AjuI GAANNNNNNNTTGG 2 cut(s) 1165, 1197
AleI CACNNNNGTG 1 cut(s) 1253
AloI GAACNNNNNNTCC 2 cut(s) 952, 984
AluBI AGCT 7 cut(s) 33, 280, 340, 587, 799, 869, 950
AluI AGCT 7 cut(s) 33, 280, 340, 587, 799, 869, 950
Alw21I GWGCWC 2 cut(s) 604, 801
Alw26I GTCTC 2 cut(s) 368, 421
AlwI GGATC 2 cut(s) 776, 820
Ama87I CYCGRG 1 cut(s) 1035
AoxI GGCC 5 cut(s) 180, 246, 368, 883, 1230
ApeKI GCWGC 5 cut(s) 340, 517, 520, 523, 526
ApoI RAATTY 2 cut(s) 1105, 1271
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AseI ATTAAT 1 cut(s) 1305
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 2 cut(s) 480, 1152
AspS9I GGNCC 2 cut(s) 82, 884
AsuHPI GGTGA 3 cut(s) 206, 674, 1147
AsuII TTCGAA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 1035
AvaII GGWCC 1 cut(s) 82
BalI TGGCCA 2 cut(s) 370, 1232
BanII GRGCYC 1 cut(s) 801
BauI CACGAG 1 cut(s) 1045
Bbv12I GWGCWC 2 cut(s) 604, 801
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 5 cut(s) 327, 529, 532, 535, 538
BccI CCATC 3 cut(s) 554, 659, 1238
BceAI ACGGC 2 cut(s) 167, 214
BciT130I CCWGG 1 cut(s) 1208
BclI TGATCA 1 cut(s) 1066
BcoDI GTCTC 2 cut(s) 368, 421
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 3 cut(s) 48, 341, 534
BisI GCNGC 7 cut(s) 96, 316, 341, 518, 521, 524, 527
BlsI GCNGC 7 cut(s) 97, 317, 342, 519, 522, 525, 528
BmcAI AGTACT 2 cut(s) 274, 943
Bme1390I CCNGG 1 cut(s) 1208
Bme18I GGWCC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 1035
BmgBI CACGTC 1 cut(s) 1213
BmgT120I GGNCC 2 cut(s) 82, 884
BmiI GGNNCC 3 cut(s) 84, 393, 742
BmrFI CCNGG 1 cut(s) 1208
BmrI ACTGGG 2 cut(s) 1019, 1083
BmsI GCATC 2 cut(s) 421, 1161
BmuI ACTGGG 2 cut(s) 1019, 1083
BoxI GACNNNNGTC 1 cut(s) 60
BpmI CTGGAG 2 cut(s) 392, 966
Bpu10I CCTNAGC 3 cut(s) 177, 243, 613
Bpu14I TTCGAA 1 cut(s) 328
BpuEI CTTGAG 2 cut(s) 1151, 1262
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 4 cut(s) 183, 249, 396, 903
BsaWI WCCGGW 3 cut(s) 109, 148, 1326
BsaXI ACNNNNNCTCC 2 cut(s) 909, 939
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 322, 387, 893, 929
Bse1I ACTGG 7 cut(s) 409, 460, 652, 923, 949, 1014, 1078
Bse3DI GCAATG 2 cut(s) 48, 580
BseBI CCWGG 1 cut(s) 1208
BseDI CCNNGG 4 cut(s) 183, 249, 396, 903
BseGI GGATG 3 cut(s) 259, 628, 1288
BseLI CCNNNNNNNGG 5 cut(s) 172, 322, 387, 893, 929
BseMI GCAATG 2 cut(s) 48, 580
BseMII CTCAG 5 cut(s) 117, 191, 234, 627, 711
BseNI ACTGG 7 cut(s) 409, 460, 652, 923, 949, 1014, 1078
BseRI GAGGAG 3 cut(s) 30, 224, 483
BseXI GCAGC 5 cut(s) 327, 529, 532, 535, 538
BseYI CCCAGC 2 cut(s) 33, 1097
BshFI GGCC 5 cut(s) 182, 248, 370, 885, 1232
BsiHKAI GWGCWC 2 cut(s) 604, 801
BsiHKCI CYCGRG 1 cut(s) 1035
BsiSI CCGG 4 cut(s) 110, 137, 149, 1327
BslFI GGGAC 2 cut(s) 230, 502
BslI CCNNNNNNNGG 5 cut(s) 172, 322, 387, 893, 929
BsmAI GTCTC 2 cut(s) 368, 421
BsmFI GGGAC 2 cut(s) 230, 502
BsmI GAATGC 1 cut(s) 1139
BsnI GGCC 5 cut(s) 182, 248, 370, 885, 1232
BsoBI CYCGRG 1 cut(s) 1035
Bsp119I TTCGAA 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 604, 801
Bsp1407I TGTACA 1 cut(s) 847
Bsp143I GATC 3 cut(s) 781, 812, 1066
BspACI CCGC 3 cut(s) 96, 268, 316
BspANI GGCC 5 cut(s) 182, 248, 370, 885, 1232
BspCNI CTCAG 5 cut(s) 118, 190, 235, 626, 712
BspLI GGNNCC 3 cut(s) 84, 393, 742
BspMAI CTGCAG 1 cut(s) 345
BspPI GGATC 2 cut(s) 776, 820
BspT104I TTCGAA 1 cut(s) 328
BsrBI CCGCTC 1 cut(s) 268
BsrDI GCAATG 2 cut(s) 48, 580
BsrGI TGTACA 1 cut(s) 847
BsrI ACTGG 7 cut(s) 409, 460, 652, 923, 949, 1014, 1078
BssECI CCNNGG 4 cut(s) 183, 249, 396, 903
BssMI GATC 3 cut(s) 781, 812, 1066
BssNI GRCGYC 1 cut(s) 93
BssSI CACGAG 1 cut(s) 1045
BssT1I CCWWGG 2 cut(s) 396, 903
Bst2BI CACGAG 1 cut(s) 1045
Bst2UI CCWGG 1 cut(s) 1208
Bst4CI ACNGT 4 cut(s) 194, 290, 826, 1334
Bst6I CTCTTC 2 cut(s) 231, 971
BstACI GRCGYC 1 cut(s) 93
BstAUI TGTACA 1 cut(s) 847
BstBI TTCGAA 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 9 cut(s) 126, 177, 243, 276, 507, 613, 720, 791, 951
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 3 cut(s) 259, 628, 1288
BstHHI GCGC 2 cut(s) 480, 1152
BstKTI GATC 3 cut(s) 784, 815, 1069
BstMAI GTCTC 2 cut(s) 368, 421
BstMBI GATC 3 cut(s) 781, 812, 1066
BstMWI GCNNNNNNNGC 6 cut(s) 101, 367, 469, 523, 526, 584
BstNI CCWGG 1 cut(s) 1208
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 1206
BstSFI CTRYAG 3 cut(s) 48, 341, 534
BstV1I GCAGC 5 cut(s) 327, 529, 532, 535, 538
BstX2I RGATCY 1 cut(s) 812
BstXI CCANNNNNNTGG 2 cut(s) 659, 871
BstYI RGATCY 1 cut(s) 812
BsuRI GGCC 5 cut(s) 182, 248, 370, 885, 1232
BtgI CCRYGG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 1213
BtsCI GGATG 3 cut(s) 259, 628, 1288
BtsI GCAGTG 1 cut(s) 1152
BtsIMutI CAGTG 3 cut(s) 123, 822, 1152
Cac8I GCNNGC 1 cut(s) 368
CfoI GCGC 2 cut(s) 480, 1152
Cfr13I GGNCC 2 cut(s) 82, 884
CseI GACGC 1 cut(s) 101
Csp6I GTAC 6 cut(s) 273, 453, 848, 926, 942, 1330
CviAII CATG 2 cut(s) 387, 1234
CviQI GTAC 6 cut(s) 273, 453, 848, 926, 942, 1330
DdeI CTNAG 9 cut(s) 126, 177, 243, 276, 507, 613, 720, 791, 951
DpnI GATC 3 cut(s) 783, 814, 1068
DpnII GATC 3 cut(s) 781, 812, 1066
DraI TTTAAA 1 cut(s) 985
EaeI YGGCCR 2 cut(s) 368, 1230
Eam1104I CTCTTC 2 cut(s) 231, 971
EarI CTCTTC 2 cut(s) 231, 971
Ecl136II GAGCTC 1 cut(s) 799
Eco130I CCWWGG 2 cut(s) 396, 903
Eco24I GRGCYC 1 cut(s) 801
Eco32I GATATC 1 cut(s) 1194
Eco47I GGWCC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 799
Eco88I CYCGRG 1 cut(s) 1035
EcoICRI GAGCTC 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 1206
EcoRV GATATC 1 cut(s) 1194
EcoT14I CCWWGG 2 cut(s) 396, 903
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 2 cut(s) 396, 903
FaeI CATG 2 cut(s) 390, 1237
FaqI GGGAC 2 cut(s) 230, 502
FatI CATG 2 cut(s) 386, 1233
FbaI TGATCA 1 cut(s) 1066
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 7 cut(s) 96, 316, 341, 518, 521, 524, 527
FokI GGATG 3 cut(s) 266, 635, 1275
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 7 cut(s) 96, 316, 341, 518, 521, 524, 527
FspAI RTGCGCAY 1 cut(s) 1151
FspBI CTAG 1 cut(s) 597
FspI TGCGCA 1 cut(s) 1151
GlaI GCGC 2 cut(s) 479, 1151
GluI GCNGC 7 cut(s) 96, 316, 341, 518, 521, 524, 527
GsaI CCCAGC 2 cut(s) 37, 1101
GsuI CTGGAG 2 cut(s) 392, 966
HaeIII GGCC 5 cut(s) 182, 248, 370, 885, 1232
HapII CCGG 4 cut(s) 110, 137, 149, 1327
HgaI GACGC 1 cut(s) 101
HhaI GCGC 2 cut(s) 480, 1152
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 2 cut(s) 390, 1237
Hin6I GCGC 2 cut(s) 478, 1150
HinP1I GCGC 2 cut(s) 478, 1150
HindIII AAGCTT 2 cut(s) 278, 585
HinfI GANTC 3 cut(s) 490, 716, 1162
HpaII CCGG 4 cut(s) 110, 137, 149, 1327
HphI GGTGA 3 cut(s) 206, 674, 1147
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 5 cut(s) 421, 721, 835, 1006, 1243
Hpy188III TCNNGA 3 cut(s) 74, 872, 1088
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 3 cut(s) 59, 95, 173
HpyAV CCTTC 2 cut(s) 221, 951
HpyCH4III ACNGT 4 cut(s) 194, 290, 826, 1334
HpyCH4IV ACGT 1 cut(s) 1212
HpyCH4V TGCA 4 cut(s) 343, 734, 1028, 1137
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 367, 469, 523, 526, 584
HpyF3I CTNAG 9 cut(s) 126, 177, 243, 276, 507, 613, 720, 791, 951
HpySE526I ACGT 1 cut(s) 1212
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 2 cut(s) 390, 1237
HspAI GCGC 2 cut(s) 478, 1150
Ksp22I TGATCA 1 cut(s) 1066
Kzo9I GATC 3 cut(s) 781, 812, 1066
LmnI GCTCC 2 cut(s) 265, 947
Lsp1109I GCAGC 5 cut(s) 327, 529, 532, 535, 538
LweI GCATC 2 cut(s) 421, 1161
MaeI CTAG 1 cut(s) 597
MaeII ACGT 1 cut(s) 1212
MaeIII GTNAC 3 cut(s) 121, 194, 1219
MalI GATC 3 cut(s) 783, 814, 1068
MbiI CCGCTC 1 cut(s) 268
MboI GATC 3 cut(s) 781, 812, 1066
MboII GAAGA 7 cut(s) 37, 245, 248, 452, 523, 620, 988
MflI RGATCY 1 cut(s) 812
MhlI GDGCHC 2 cut(s) 604, 801
MlsI TGGCCA 2 cut(s) 370, 1232
MluCI AATT 6 cut(s) 141, 711, 750, 1105, 1271, 1306
MluNI TGGCCA 2 cut(s) 370, 1232
MlyI GAGTC 1 cut(s) 484
Mox20I TGGCCA 2 cut(s) 370, 1232
MroXI GAANNNNTTC 1 cut(s) 309
MscI TGGCCA 2 cut(s) 370, 1232
MseI TTAA 3 cut(s) 879, 984, 1305
MslI CAYNNNNRTG 1 cut(s) 1253
Msp20I TGGCCA 2 cut(s) 370, 1232
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 4 cut(s) 110, 137, 149, 1327
MspR9I CCNGG 1 cut(s) 1208
MssI GTTTAAAC 1 cut(s) 985
Mva1269I GAATGC 1 cut(s) 1139
MvaI CCWGG 1 cut(s) 1208
MwoI GCNNNNNNNGC 6 cut(s) 101, 367, 469, 523, 526, 584
NdeII GATC 3 cut(s) 781, 812, 1066
NlaIII CATG 2 cut(s) 390, 1237
NlaIV GGNNCC 3 cut(s) 84, 393, 742
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 2 cut(s) 121, 194
NsbI TGCGCA 1 cut(s) 1151
NspV TTCGAA 1 cut(s) 328
OliI CACNNNNGTG 1 cut(s) 1253
PaeR7I CTCGAG 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 1139
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 716, 1162
PflMI CCANNNNNTGG 1 cut(s) 387
PfoI TCCNGGA 1 cut(s) 1206
PkrI GCNGC 7 cut(s) 97, 317, 342, 519, 522, 525, 528
PleI GAGTC 1 cut(s) 484
PmeI GTTTAAAC 1 cut(s) 985
PpsI GAGTC 1 cut(s) 484
PshAI GACNNNNGTC 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 1305
Psp124BI GAGCTC 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 1206
PspFI CCCAGC 2 cut(s) 33, 1097
PspGI CCWGG 1 cut(s) 1206
PspN4I GGNNCC 3 cut(s) 84, 393, 742
PspPI GGNCC 2 cut(s) 82, 884
PspXI VCTCGAGB 1 cut(s) 1035
PstI CTGCAG 1 cut(s) 345
PsuI RGATCY 1 cut(s) 812
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 6 cut(s) 274, 454, 849, 927, 943, 1331
RsaNI GTAC 6 cut(s) 273, 453, 848, 926, 942, 1330
RseI CAYNNNNRTG 1 cut(s) 1253
SacI GAGCTC 1 cut(s) 801
SaqAI TTAA 3 cut(s) 879, 984, 1305
SatI GCNGC 7 cut(s) 96, 316, 341, 518, 521, 524, 527
Sau3AI GATC 3 cut(s) 781, 812, 1066
Sau96I GGNCC 2 cut(s) 82, 884
ScaI AGTACT 2 cut(s) 274, 943
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 1 cut(s) 1208
SduI GDGCHC 2 cut(s) 604, 801
SfaNI GCATC 2 cut(s) 421, 1161
SfcI CTRYAG 3 cut(s) 48, 341, 534
Sfr274I CTCGAG 1 cut(s) 1035
SfuI TTCGAA 1 cut(s) 328
SinI GGWCC 1 cut(s) 82
SlaI CTCGAG 1 cut(s) 1035
SmiMI CAYNNNNRTG 1 cut(s) 1253
SmlI CTYRAG 3 cut(s) 1035, 1166, 1277
SmoI CTYRAG 3 cut(s) 1035, 1166, 1277
Sse9I AATT 6 cut(s) 141, 711, 750, 1105, 1271, 1306
SsiI CCGC 3 cut(s) 96, 268, 316
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 1 cut(s) 1206
StyI CCWWGG 2 cut(s) 396, 903
TaaI ACNGT 4 cut(s) 194, 290, 826, 1334
TaiI ACGT 1 cut(s) 1215
TaqI TCGA 4 cut(s) 303, 328, 1036, 1190
TasI AATT 6 cut(s) 141, 711, 750, 1105, 1271, 1306
TatI WGTACW 4 cut(s) 272, 847, 925, 941
TauI GCSGC 2 cut(s) 98, 318
TfiI GAWTC 2 cut(s) 716, 1162
Tru1I TTAA 3 cut(s) 879, 984, 1305
Tru9I TTAA 3 cut(s) 879, 984, 1305
TscAI CASTG 3 cut(s) 130, 829, 1152
TseFI GTSAC 2 cut(s) 121, 194
TseI GCWGC 5 cut(s) 340, 517, 520, 523, 526
Tsp45I GTSAC 2 cut(s) 121, 194
TspDTI ATGAA 2 cut(s) 312, 1146
TspGWI ACGGA 3 cut(s) 95, 481, 1207
TspRI CASTG 3 cut(s) 130, 829, 1152
Van91I CCANNNNNTGG 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 82
VspI ATTAAT 1 cut(s) 1305
XapI RAATTY 2 cut(s) 1105, 1271
XhoI CTCGAG 1 cut(s) 1035
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 597
ZrmI AGTACT 2 cut(s) 274, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.