Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Forward (+)

19413039 .. 19414571

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G136500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTCTTGTTCTTCAACCTTCATTGTCCATGTTTACTCTTGTAACCTTGTTTTCTATTCTTCTGAACCTAAACCCTAGCTCATGCTTCAACCCAAAACTCTTCAGTGTGTCAAGGCTTCAGTCTGACTCTGACTGGGCGGCAGCCGGTGCAACTTGGTATGGAAACCCCGACGGTGCTGGGACTGATGGGGGTGCTTGTGGTTATGGCAATGCTGTAGAAAACTCTCCATTCTCTAAAATGGTGTCTGCTGGAGGCCCTTCTTTATTCAAATCAGGCAAAGGATGTGGAGCTTGTTATCAGGTGAAGTGCACGACGAATGCTGCATGCTCAGGGAACTCGGCGACTGTCGTTATAACCGATGAGTGCCCCGGATGTACTTCAGAGTCGGTTCACTTTGATTTGAGCGGCACTGCGTTTGGAGCCATGGCAGTTTCCGGCCAGGAGGGACAACTACGGAATGCTGGAGTCCTGCAGATTCAATATAAAAGAGTGGACTGCAACTATCCTGGAGTGACCCTCATCTTTCGTGTCGACTCGGGTTCAAACCCTAACTATTTTGCTACCCTAATCGAGTATGAAGATGGAGCAGGTGACCTAACTGAAGTTCATCTCAAGCAAAGTGGTGGAGACTCGGACTCATGGCTTCTCATGCAGGAATCTTGGGGTGCTGTTTGGAAACTTGACTCAGGCTCAGCATTGCAAGCCCCATTCTCTATTAGGCTCACTGCAAGCAACGGCCAAGCCCTTGTAGCAAACAATGTCATTCCGGCTGGTTGGCAAGCCGGCCAGACTTATCGATCCCTTGTAAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

273

Amino Acids

28.52

Weight (kDa)

4.72

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AarI	CACCTGC	1 cut(s)	581
Acc36I	ACCTGC	1 cut(s)	581
AccBSI	CCGCTC	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	2 cut(s)	140, 408
AclWI	GGATC	1 cut(s)	795
AcoI	YGGCCR	3 cut(s)	439, 739, 787
AcuI	CTGAAG	4 cut(s)	88, 104, 366, 624
AfaI	GTAC	1 cut(s)	379
AgsI	TTSAA	5 cut(s)	17, 91, 271, 482, 546
AjnI	CCWGG	2 cut(s)	441, 508
AluBI	AGCT	2 cut(s)	81, 293
AluI	AGCT	2 cut(s)	81, 293
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	624
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	795
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	4 cut(s)	256, 439, 739, 787
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	143, 323
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	316, 605
AvaI	CYCGRG	1 cut(s)	538
BaeGI	GKGCMC	2 cut(s)	314, 371
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	155, 310
BccI	CCATC	2 cut(s)	182, 578
BceAI	ACGGC	1 cut(s)	754
BciT130I	CCWGG	2 cut(s)	443, 510
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	624
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	2 cut(s)	216, 473
BfuAI	ACCTGC	1 cut(s)	581
BisI	GCNGC	4 cut(s)	141, 144, 324, 409
BlpI	GCTNAGC	1 cut(s)	694
BlsI	GCNGC	4 cut(s)	142, 145, 325, 410
Bme1390I	CCNGG	3 cut(s)	372, 443, 510
BmeT110I	CYCGRG	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	3 cut(s)	372, 443, 510
BmrI	ACTGGG	1 cut(s)	145
BmuI	ACTGGG	1 cut(s)	145
BplI	GAGNNNNNCTC	2 cut(s)	504, 536
BpmI	CTGGAG	3 cut(s)	273, 486, 531
Bpu10I	CCTNAGC	1 cut(s)	331
Bpu1102I	GCTNAGC	1 cut(s)	694
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	799
BsaJI	CCNNGG	2 cut(s)	370, 426
Bse118I	RCCGGY	2 cut(s)	146, 785
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	2 cut(s)	217, 698
BseBI	CCWGG	2 cut(s)	443, 510
BseCI	ATCGAT	1 cut(s)	799
BseDI	CCNNGG	2 cut(s)	370, 426
BseGI	GGATG	2 cut(s)	290, 380
BseMI	GCAATG	2 cut(s)	217, 698
BseMII	CTCAG	3 cut(s)	345, 702, 708
BseNI	ACTGG	1 cut(s)	140
BseSI	GKGCMC	2 cut(s)	314, 371
BseXI	GCAGC	2 cut(s)	155, 310
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	4 cut(s)	258, 441, 741, 789
BshVI	ATCGAT	1 cut(s)	799
BsiHKAI	GWGCWC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	5 cut(s)	147, 372, 438, 770, 786
BslFI	GGGAC	2 cut(s)	196, 462
BsmAI	GTCTC	1 cut(s)	624
BsmFI	GGGAC	2 cut(s)	196, 462
BsmI	GAATGC	2 cut(s)	325, 466
BsnI	GGCC	4 cut(s)	258, 441, 741, 789
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	314, 371
Bsp143I	GATC	1 cut(s)	800
Bsp1720I	GCTNAGC	1 cut(s)	694
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	2 cut(s)	140, 408
BspANI	GGCC	4 cut(s)	258, 441, 741, 789
BspCNI	CTCAG	3 cut(s)	344, 701, 707
BspDI	ATCGAT	1 cut(s)	799
BspLI	GGNNCC	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	581
BspPI	GGATC	1 cut(s)	795
BsrBI	CCGCTC	1 cut(s)	408
BsrDI	GCAATG	2 cut(s)	217, 698
BsrFI	RCCGGY	2 cut(s)	146, 785
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	2 cut(s)	146, 785
BssECI	CCNNGG	2 cut(s)	370, 426
BssMI	GATC	1 cut(s)	800
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	443, 510
Bst4CI	ACNGT	2 cut(s)	176, 349
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	5 cut(s)	328, 705, 733, 783, 787
BstDEI	CTNAG	3 cut(s)	331, 688, 694
BstDSI	CCRYGG	1 cut(s)	426
BstEII	GGTNACC	1 cut(s)	593
BstF5I	GGATG	2 cut(s)	290, 380
BstKTI	GATC	1 cut(s)	803
BstMAI	GTCTC	1 cut(s)	624
BstMBI	GATC	1 cut(s)	800
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 422, 652, 704, 752
BstNI	CCWGG	2 cut(s)	443, 510
BstNSI	RCATGY	1 cut(s)	330
BstPI	GGTNACC	1 cut(s)	593
BstSCI	CCNGG	3 cut(s)	370, 441, 508
BstSFI	CTRYAG	2 cut(s)	216, 473
BstSLI	GKGCMC	2 cut(s)	314, 371
BstV1I	GCAGC	2 cut(s)	155, 310
Bsu15I	ATCGAT	1 cut(s)	799
BsuRI	GGCC	4 cut(s)	258, 441, 741, 789
BsuTUI	ATCGAT	1 cut(s)	799
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	290, 380
BtsI	GCAGTG	2 cut(s)	411, 726
BtsIMutI	CAGTG	3 cut(s)	112, 411, 726
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	5 cut(s)	328, 705, 733, 783, 787
Cfr10I	RCCGGY	2 cut(s)	146, 785
Cfr13I	GGNCC	1 cut(s)	257
ClaI	ATCGAT	1 cut(s)	799
Csp6I	GTAC	1 cut(s)	378
CspCI	CAANNNNNGTGG	4 cut(s)	268, 303, 604, 639
CviAII	CATG	6 cut(s)	31, 84, 327, 427, 642, 652
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	3 cut(s)	331, 688, 694
DpnI	GATC	1 cut(s)	802
DpnII	GATC	1 cut(s)	800
EaeI	YGGCCR	3 cut(s)	439, 739, 787
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	426
Eco57I	CTGAAG	4 cut(s)	88, 104, 366, 624
Eco88I	CYCGRG	1 cut(s)	538
Eco91I	GGTNACC	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	441, 508
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	6 cut(s)	34, 87, 330, 430, 645, 655
FaqI	GGGAC	2 cut(s)	196, 462
FatI	CATG	6 cut(s)	30, 83, 326, 426, 641, 651
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	141, 144, 324, 409
FokI	GGATG	2 cut(s)	297, 387
Fsp4HI	GCNGC	4 cut(s)	141, 144, 324, 409
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	4 cut(s)	141, 144, 324, 409
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	3 cut(s)	273, 486, 531
HaeIII	GGCC	4 cut(s)	258, 441, 741, 789
HapII	CCGG	5 cut(s)	147, 372, 438, 770, 786
Hin1II	CATG	6 cut(s)	34, 87, 330, 430, 645, 655
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	9 cut(s)	128, 386, 468, 478, 536, 632, 638, 659, 686
HpaII	CCGG	5 cut(s)	147, 372, 438, 770, 786
HphI	GGTGA	2 cut(s)	316, 605
Hpy166II	GTNNAC	6 cut(s)	36, 312, 394, 496, 535, 811
Hpy188I	TCNGA	5 cut(s)	66, 127, 133, 385, 637
Hpy8I	GTNNAC	6 cut(s)	36, 312, 394, 496, 535, 811
Hpy99I	CGWCG	2 cut(s)	176, 319
HpyAV	CCTTC	2 cut(s)	30, 270
HpyCH4III	ACNGT	2 cut(s)	176, 349
HpyCH4V	TGCA	8 cut(s)	152, 312, 326, 475, 501, 655, 703, 731
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 422, 652, 704, 752
HpyF3I	CTNAG	3 cut(s)	331, 688, 694
Hsp92II	CATG	6 cut(s)	34, 87, 330, 430, 645, 655
KroI	GCCGGC	1 cut(s)	785
KroNI	GCCGGC	1 cut(s)	787
Kzo9I	GATC	1 cut(s)	800
LmnI	GCTCC	3 cut(s)	290, 422, 587
Lsp1109I	GCAGC	2 cut(s)	155, 310
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	43, 514, 593
MalI	GATC	1 cut(s)	802
MbiI	CCGCTC	1 cut(s)	408
MboI	GATC	1 cut(s)	800
MboII	GAAGA	4 cut(s)	5, 53, 94, 593
MhlI	GDGCHC	2 cut(s)	314, 371
MlyI	GAGTC	7 cut(s)	122, 395, 477, 530, 626, 632, 680
MnlI	CCTC	3 cut(s)	248, 439, 530
MroNI	GCCGGC	1 cut(s)	785
MseI	TTAA	1 cut(s)	817
MspI	CCGG	5 cut(s)	147, 372, 438, 770, 786
MspR9I	CCNGG	3 cut(s)	372, 443, 510
Mva1269I	GAATGC	2 cut(s)	325, 466
MvaI	CCWGG	2 cut(s)	443, 510
MwoI	GCNNNNNNNGC	5 cut(s)	149, 422, 652, 704, 752
NaeI	GCCGGC	1 cut(s)	787
NciI	CCSGG	1 cut(s)	372
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	1 cut(s)	800
NgoMIV	GCCGGC	1 cut(s)	785
NlaIII	CATG	6 cut(s)	34, 87, 330, 430, 645, 655
NlaIV	GGNNCC	1 cut(s)	424
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	2 cut(s)	514, 593
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PaqCI	CACCTGC	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	2 cut(s)	325, 466
PdiI	GCCGGC	1 cut(s)	787
PfeI	GAWTC	2 cut(s)	478, 659
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	142, 145, 325, 410
PleI	GAGTC	7 cut(s)	122, 394, 476, 530, 626, 632, 680
PpsI	GAGTC	7 cut(s)	122, 394, 476, 530, 626, 632, 680
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	441, 508
PspEI	GGTNACC	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	441, 508
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	477
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SalI	GTCGAC	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	817
SatI	GCNGC	4 cut(s)	141, 144, 324, 409
Sau3AI	GATC	1 cut(s)	800
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	7 cut(s)	122, 395, 477, 530, 626, 632, 680
ScrFI	CCNGG	3 cut(s)	372, 443, 510
SduI	GDGCHC	2 cut(s)	314, 371
SetI	ASST	8 cut(s)	22, 50, 72, 83, 295, 306, 595, 600
SfcI	CTRYAG	2 cut(s)	216, 473
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SphI	GCATGC	1 cut(s)	330
SsiI	CCGC	2 cut(s)	140, 408
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	370, 441, 508
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	176, 349
TaqI	TCGA	3 cut(s)	534, 573, 799
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	2 cut(s)	143, 411
TfiI	GAWTC	2 cut(s)	478, 659
Tru1I	TTAA	1 cut(s)	817
Tru9I	TTAA	1 cut(s)	817
TscAI	CASTG	3 cut(s)	112, 418, 733
TseFI	GTSAC	2 cut(s)	514, 593
TseI	GCWGC	2 cut(s)	143, 323
Tsp45I	GTSAC	2 cut(s)	514, 593
TspDTI	ATGAA	3 cut(s)	12, 594, 599
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	3 cut(s)	112, 418, 733
VneI	GTGCAC	1 cut(s)	310
XceI	RCATGY	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.