Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Forward (+)

40106118 .. 40107395

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTCTTGTTGTTCCACGCTCTTTGCCTATCTATGCTCTTGTGACATTGTTTTTAGTTCTACTAAACCTAAACCTAAGTTCTTGCTTCAACCCCAAACTATTGAATATCTCAAGGCTTCAGTCTGACTTGAACTGGGAAGCGACTCTCTCAACAACTCAGTCTTATTCGGACTGGGCACCCGCTGTTGCAACATGGTATGGAGACCCTGAGGGTGGTGGGACTACTGGAGGTGCATGTGCTTATGCCAATGCTGTAGATCAGCCTCCGTTTTCTAAATTGGTTTCTGCCGGAGGGGCCTCATTGTTCAAATCAGGGAAAGGATGTGGAGCTTGTTATGAGGTCAAGTGCACCGGTAATGCTGCGTGCTCGGGGAATCCTGTGACTGTTGTTATAACCGATAGCTGCCCTGGAGGTCCGTGCGCGTCTAATGCTGTTCATTTTGATTTGAGTGGCCATGCTTTTGGAGCCATGGCCAATTCTGGCCAAGAATCTCAACTACGGAATGCTGGAGTCCTTCACGTTCAGCATAGAAGAGTCGCGTGCGTTTATCCTGGTGTGGACATAACCTTCAGAGTGGACTTGGGTTCAAACCCTTACTATCTCGCTGTTGTAGTAGAATATGCAGCTGGACCTGGTGCAGTATCTGCACTCGAGCTTAAACAAGGTCGAGGTGACTCAGTCTGGCTTCCCATGCAACAATCTTGGGGTGCAGATTGGAAATTTAACTCCGGCTCACAGTTGCAGGGACCGTTATCTATTAGAATAACTGCAGATTCCGGCCAAACCTTAGTTGTAAATGATGTGATTCCGGCTGGCTGGCAGCCCGGTCAAATTTATCGCTCGGTTGTGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

286

Amino Acids

30.07

Weight (kDa)

6.05

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	96 - 176	4.8e-18	Lytic transglycolase
Expansin_C	PF01357	189 - 271	4.9e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	178
AccII	CGCG	2 cut(s)	425, 542
AciI	CCGC	1 cut(s)	183
AcoI	YGGCCR	4 cut(s)	454, 474, 484, 781
AcsI	RAATTY	2 cut(s)	722, 834
AcuI	CTGAAG	2 cut(s)	104, 556
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	5 cut(s)	91, 106, 133, 310, 591
AjnI	CCWGG	3 cut(s)	409, 553, 634
AluBI	AGCT	4 cut(s)	332, 405, 629, 658
AluI	AGCT	4 cut(s)	332, 405, 629, 658
Alw21I	GWGCWC	2 cut(s)	353, 371
Alw26I	GTCTC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	647
Ama87I	CYCGRG	2 cut(s)	370, 653
AoxI	GGCC	5 cut(s)	297, 454, 474, 484, 781
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	4 cut(s)	362, 405, 626, 823
ApoI	RAATTY	2 cut(s)	722, 834
AsiGI	ACCGGT	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	4 cut(s)	297, 416, 632, 749
AsuC2I	CCSGG	1 cut(s)	828
AsuHPI	GGTGA	1 cut(s)	686
AvaI	CYCGRG	2 cut(s)	370, 653
AvaII	GGWCC	3 cut(s)	416, 632, 749
AxyI	CCTNAGG	1 cut(s)	210
BaeGI	GKGCMC	2 cut(s)	181, 353
BalI	TGGCCA	3 cut(s)	456, 476, 486
BanI	GGYRCC	1 cut(s)	178
Bbv12I	GWGCWC	2 cut(s)	353, 371
BbvI	GCAGC	4 cut(s)	349, 392, 638, 835
BciT130I	CCWGG	3 cut(s)	411, 555, 636
BcnI	CCSGG	1 cut(s)	828
BcoDI	GTCTC	1 cut(s)	198
BfmI	CTRYAG	2 cut(s)	255, 771
BglI	GCCNNNNNGGC	1 cut(s)	296
BisI	GCNGC	4 cut(s)	363, 406, 627, 824
BlsI	GCNGC	4 cut(s)	364, 407, 628, 825
Bme1390I	CCNGG	4 cut(s)	411, 555, 636, 828
Bme18I	GGWCC	3 cut(s)	416, 632, 749
BmeT110I	CYCGRG	2 cut(s)	370, 653
BmgT120I	GGNCC	4 cut(s)	297, 416, 632, 749
BmiI	GGNNCC	4 cut(s)	180, 298, 469, 750
BmrFI	CCNGG	4 cut(s)	411, 555, 636, 828
BmrI	ACTGGG	2 cut(s)	145, 184
BmuI	ACTGGG	2 cut(s)	145, 184
BpmI	CTGGAG	3 cut(s)	249, 432, 531
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	828
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	409, 471
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	140, 179, 232
Bse21I	CCTNAGG	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	411, 555, 636
BseDI	CCNNGG	2 cut(s)	409, 471
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	3 cut(s)	173, 201, 693
BseNI	ACTGG	3 cut(s)	140, 179, 232
BseSI	GKGCMC	2 cut(s)	181, 353
BseXI	GCAGC	4 cut(s)	349, 392, 638, 835
BsgI	GTGCAG	3 cut(s)	633, 660, 732
Bsh1236I	CGCG	2 cut(s)	425, 542
BshFI	GGCC	5 cut(s)	299, 456, 476, 486, 783
BshNI	GGYRCC	1 cut(s)	178
BshTI	ACCGGT	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	353, 371
BsiHKCI	CYCGRG	2 cut(s)	370, 653
BsiSI	CCGG	6 cut(s)	291, 354, 732, 780, 812, 828
BslFI	GGGAC	2 cut(s)	235, 762
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	235, 762
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	5 cut(s)	299, 456, 476, 486, 783
Bso31I	GGTCTC	1 cut(s)	198
BsoBI	CYCGRG	2 cut(s)	370, 653
Bsp1286I	GDGCHC	3 cut(s)	181, 353, 371
Bsp143I	GATC	1 cut(s)	259
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	5 cut(s)	299, 456, 476, 486, 783
BspCNI	CTCAG	3 cut(s)	172, 202, 692
BspFNI	CGCG	2 cut(s)	425, 542
BspLI	GGNNCC	4 cut(s)	180, 298, 469, 750
BspMAI	CTGCAG	1 cut(s)	775
BspT107I	GGYRCC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	140, 179, 232
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	409, 471
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	411, 555, 636
Bst4CI	ACNGT	3 cut(s)	388, 741, 753
Bst6I	CTCTTC	1 cut(s)	529
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	4 cut(s)	367, 544, 817, 821
BstDEI	CTNAG	5 cut(s)	77, 159, 210, 679, 790
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	329
BstFNI	CGCG	2 cut(s)	425, 542
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 431, 467, 647, 694
BstNI	CCWGG	3 cut(s)	411, 555, 636
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	4 cut(s)	409, 553, 634, 826
BstSFI	CTRYAG	2 cut(s)	255, 771
BstSLI	GKGCMC	2 cut(s)	181, 353
BstUI	CGCG	2 cut(s)	425, 542
BstV1I	GCAGC	4 cut(s)	349, 392, 638, 835
BstXI	CCANNNNNNTGG	1 cut(s)	464
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	5 cut(s)	299, 456, 476, 486, 783
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	329
Cac8I	GCNNGC	4 cut(s)	367, 544, 817, 821
CaiI	CAGNNNCTG	1 cut(s)	647
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	4 cut(s)	297, 416, 632, 749
CseI	GACGC	1 cut(s)	414
CsiI	ACCWGGT	1 cut(s)	634
CspAI	ACCGGT	1 cut(s)	353
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	5 cut(s)	195, 237, 458, 472, 694
DdeI	CTNAG	5 cut(s)	77, 159, 210, 679, 790
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	4 cut(s)	454, 474, 484, 781
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	416, 632, 749
Eco57I	CTGAAG	2 cut(s)	104, 556
Eco81I	CCTNAGG	1 cut(s)	210
Eco88I	CYCGRG	2 cut(s)	370, 653
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	409, 553, 634
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	5 cut(s)	198, 240, 461, 475, 697
FaqI	GGGAC	2 cut(s)	235, 762
FatI	CATG	5 cut(s)	194, 236, 457, 471, 693
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	363, 406, 627, 824
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	4 cut(s)	363, 406, 627, 824
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	4 cut(s)	363, 406, 627, 824
GsuI	CTGGAG	3 cut(s)	249, 432, 531
HaeIII	GGCC	5 cut(s)	299, 456, 476, 486, 783
HapII	CCGG	6 cut(s)	291, 354, 732, 780, 812, 828
HgaI	GACGC	1 cut(s)	414
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	5 cut(s)	198, 240, 461, 475, 697
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HinfI	GANTC	8 cut(s)	145, 376, 491, 513, 537, 677, 776, 808
HpaII	CCGG	6 cut(s)	291, 354, 732, 780, 812, 828
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	4 cut(s)	351, 562, 580, 853
Hpy188I	TCNGA	3 cut(s)	127, 172, 575
Hpy8I	GTNNAC	4 cut(s)	351, 562, 580, 853
HpyAV	CCTTC	2 cut(s)	527, 580
HpyCH4III	ACNGT	3 cut(s)	388, 741, 753
HpyCH4IV	ACGT	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 431, 467, 647, 694
HpyF3I	CTNAG	5 cut(s)	77, 159, 210, 679, 790
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	5 cut(s)	198, 240, 461, 475, 697
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	329, 467
Lsp1109I	GCAGC	4 cut(s)	349, 392, 638, 835
MabI	ACCWGGT	1 cut(s)	634
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	3 cut(s)	43, 382, 674
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	546
MhlI	GDGCHC	3 cut(s)	181, 353, 371
MlsI	TGGCCA	3 cut(s)	456, 476, 486
MluCI	AATT	4 cut(s)	278, 478, 722, 834
MluNI	TGGCCA	3 cut(s)	456, 476, 486
MlyI	GAGTC	4 cut(s)	139, 522, 546, 671
MnlI	CCTC	8 cut(s)	205, 224, 276, 287, 310, 334, 407, 665
Mox20I	TGGCCA	3 cut(s)	456, 476, 486
MscI	TGGCCA	3 cut(s)	456, 476, 486
MseI	TTAA	2 cut(s)	660, 726
Msp20I	TGGCCA	3 cut(s)	456, 476, 486
MspA1I	CMGCKG	2 cut(s)	185, 629
MspI	CCGG	6 cut(s)	291, 354, 732, 780, 812, 828
MspR9I	CCNGG	4 cut(s)	411, 555, 636, 828
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	3 cut(s)	411, 555, 636
MvnI	CGCG	2 cut(s)	425, 542
MwoI	GCNNNNNNNGC	5 cut(s)	296, 431, 467, 647, 694
NciI	CCSGG	1 cut(s)	828
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	5 cut(s)	198, 240, 461, 475, 697
NlaIV	GGNNCC	4 cut(s)	180, 298, 469, 750
NmuCI	GTSAC	3 cut(s)	43, 382, 674
NspI	RCATGY	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	653
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	4 cut(s)	376, 491, 776, 808
PflFI	GACNNNGTC	1 cut(s)	680
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	4 cut(s)	364, 407, 628, 825
PleI	GAGTC	4 cut(s)	139, 521, 545, 671
PpsI	GAGTC	4 cut(s)	139, 521, 545, 671
PsiI	TTATAA	1 cut(s)	395
Psp6I	CCWGG	3 cut(s)	409, 553, 634
PspGI	CCWGG	3 cut(s)	409, 553, 634
PspN4I	GGNNCC	4 cut(s)	180, 298, 469, 750
PspPI	GGNCC	4 cut(s)	297, 416, 632, 749
PspXI	VCTCGAGB	1 cut(s)	653
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	647
PsyI	GACNNNGTC	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	660, 726
SatI	GCNGC	4 cut(s)	363, 406, 627, 824
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	4 cut(s)	297, 416, 632, 749
SchI	GAGTC	4 cut(s)	139, 522, 546, 671
ScrFI	CCNGG	4 cut(s)	411, 555, 636, 828
SduI	GDGCHC	3 cut(s)	181, 353, 371
SexAI	ACCWGGT	1 cut(s)	634
SfcI	CTRYAG	2 cut(s)	255, 771
Sfr274I	CTCGAG	1 cut(s)	653
SinI	GGWCC	3 cut(s)	416, 632, 749
SlaI	CTCGAG	1 cut(s)	653
SmlI	CTYRAG	2 cut(s)	112, 653
SmoI	CTYRAG	2 cut(s)	112, 653
Sse9I	AATT	4 cut(s)	278, 478, 722, 834
SsiI	CCGC	1 cut(s)	183
StyD4I	CCNGG	4 cut(s)	409, 553, 634, 826
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	388, 741, 753
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	654, 670
TasI	AATT	4 cut(s)	278, 478, 722, 834
TfiI	GAWTC	4 cut(s)	376, 491, 776, 808
Tru1I	TTAA	2 cut(s)	660, 726
Tru9I	TTAA	2 cut(s)	660, 726
TseFI	GTSAC	3 cut(s)	43, 382, 674
TseI	GCWGC	4 cut(s)	362, 405, 626, 823
Tsp45I	GTSAC	3 cut(s)	43, 382, 674
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	3 cut(s)	258, 408, 517
Tth111I	GACNNNGTC	1 cut(s)	680
VneI	GTGCAC	1 cut(s)	349
VpaK11BI	GGWCC	3 cut(s)	416, 632, 749
XapI	RAATTY	2 cut(s)	722, 834
XceI	RCATGY	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.