Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Forward (+)

13464104 .. 13466839

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1113600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTCTTTTTCTTCAACATAATTCATTGTCTATCACTACTCTTGTAACCTTGTTTTCTATTCTACTAAACCTAAACCATAGTTGTTGCTTCAACCCAAAACTCTTTAACGTCTCAAAGCTTCAGTCTGACTCTGACTGGTCACCGGCCGGTGCAACTTGGTATGGACCCGCTGACGGTGCTGGGACTGATGGGGGTGCTTGTGGTTATCTGGATACTGTAGAAAACCCTCCATTCTCTAAATTGGTGTCGGCTGGAGGCCCTTCTTTATTCAAATCAGGAAAAGGATGTGGAACTTGTTATCAGGTGAAGTGCACGGGGAATTCTGCATGCTCAGGCAATCAGGCAACTGTGATTATAACTGATGAGTGCCCAGGATGTACTTCAGAATCTGTTCATTTTGATATGAGTGGCACTGCCTTCGGTGCCATGGCGATTTCTGGCCATGAGGGTCAATTGCGGAATGCGGGAGTCTTGCAGATTCAATACAAAAGAGTGAACTGCAGTTATCCTGGTGTGACAATAACCTTCCACGTCGACTCGGGTTCAGACCCTTACTATTTTGGAACTCTAATAGAATTTGAAGATGGAGCAGGTGACCTAATGGAAGTTCACCTCAAACAAAATGATGACTCGGACTCGTGGCTCTCCATGCAGGAATCGTGGGGTGCAGTTTGGAAACTAAACTCAGGCTCAACATTGCAAGCCCCATTATCAATTAGGCTGACTGCAAGCAACGGCCAGTCCGTTGTAGCAAATAATGTTATTCCGACTGGTTGGCAACCAGGCCAGACTTACCGGTCGGTTGTCAACTTCGAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

275

Amino Acids

29.15

Weight (kDa)

4.86

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	84 - 163	5.2e-17	Lytic transglycolase
Expansin_C	PF01357	175 - 257	8.7e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AarI	CACCTGC	1 cut(s)	584
AasI	GACNNNNNNGTC	1 cut(s)	799
Acc36I	ACCTGC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	3 cut(s)	171, 460, 467
AcoI	YGGCCR	3 cut(s)	147, 442, 739
AcsI	RAATTY	2 cut(s)	322, 578
AcuI	CTGAAG	2 cut(s)	107, 369
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgeI	ACCGGT	1 cut(s)	798
AgsI	TTSAA	5 cut(s)	17, 94, 274, 485, 584
AjiI	CACGTC	1 cut(s)	535
AjnI	CCWGG	3 cut(s)	373, 511, 784
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	313
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	5 cut(s)	147, 259, 442, 739, 787
ApaLI	GTGCAC	1 cut(s)	313
ApoI	RAATTY	2 cut(s)	322, 578
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AsiGI	ACCGGT	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	167, 260
AsuHPI	GGTGA	4 cut(s)	135, 319, 605, 608
AsuII	TTCGAA	1 cut(s)	816
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	2 cut(s)	317, 374
BalI	TGGCCA	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	2 cut(s)	185, 581
BceAI	ACGGC	1 cut(s)	754
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	3 cut(s)	375, 513, 786
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	118
BfmI	CTRYAG	2 cut(s)	219, 502
BfuAI	ACCTGC	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	208
Bme1390I	CCNGG	3 cut(s)	375, 513, 786
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	541
BmgBI	CACGTC	1 cut(s)	535
BmgT120I	GGNCC	2 cut(s)	167, 260
BmiI	GGNNCC	2 cut(s)	169, 427
BmrFI	CCNGG	3 cut(s)	375, 513, 786
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	816
BsaJI	CCNNGG	2 cut(s)	373, 429
BsaWI	WCCGGW	1 cut(s)	798
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	3 cut(s)	145, 149, 798
Bse1I	ACTGG	3 cut(s)	143, 742, 778
Bse3DI	GCAATG	1 cut(s)	698
BseBI	CCWGG	3 cut(s)	375, 513, 786
BseDI	CCNNGG	2 cut(s)	373, 429
BseGI	GGATG	2 cut(s)	293, 383
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	698
BseMII	CTCAG	2 cut(s)	348, 702
BseNI	ACTGG	3 cut(s)	143, 742, 778
BseSI	GKGCMC	2 cut(s)	317, 374
BseX3I	CGGCCG	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	690
Bsh1285I	CGRYCG	2 cut(s)	150, 803
BshFI	GGCC	5 cut(s)	149, 261, 444, 741, 789
BshNI	GGYRCC	1 cut(s)	425
BshTI	ACCGGT	1 cut(s)	798
BsiEI	CGRYCG	2 cut(s)	150, 803
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	3 cut(s)	146, 150, 799
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	118
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	5 cut(s)	149, 261, 444, 741, 789
BsoBI	CYCGRG	1 cut(s)	541
Bsp119I	TTCGAA	1 cut(s)	816
Bsp1286I	GDGCHC	2 cut(s)	317, 374
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	3 cut(s)	171, 460, 467
BspANI	GGCC	5 cut(s)	149, 261, 444, 741, 789
BspCNI	CTCAG	2 cut(s)	347, 701
BspLI	GGNNCC	2 cut(s)	169, 427
BspMAI	CTGCAG	1 cut(s)	506
BspMI	ACCTGC	1 cut(s)	584
BspT104I	TTCGAA	1 cut(s)	816
BspT107I	GGYRCC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	698
BsrFI	RCCGGY	3 cut(s)	145, 149, 798
BsrI	ACTGG	3 cut(s)	143, 742, 778
BssAI	RCCGGY	3 cut(s)	145, 149, 798
BssECI	CCNNGG	2 cut(s)	373, 429
BssSI	CACGAG	1 cut(s)	640
BssT1I	CCWWGG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	640
Bst2UI	CCWGG	3 cut(s)	375, 513, 786
Bst4CI	ACNGT	3 cut(s)	179, 220, 352
BstBI	TTCGAA	1 cut(s)	816
BstC8I	GCNNGC	3 cut(s)	331, 705, 733
BstDEI	CTNAG	2 cut(s)	334, 688
BstDSI	CCRYGG	1 cut(s)	429
BstEII	GGTNACC	2 cut(s)	141, 596
BstF5I	GGATG	2 cut(s)	293, 383
BstMAI	GTCTC	1 cut(s)	118
BstMCI	CGRYCG	2 cut(s)	150, 803
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 425, 652
BstNI	CCWGG	3 cut(s)	375, 513, 786
BstNSI	RCATGY	1 cut(s)	333
BstPI	GGTNACC	2 cut(s)	141, 596
BstSCI	CCNGG	3 cut(s)	373, 511, 784
BstSFI	CTRYAG	2 cut(s)	219, 502
BstSLI	GKGCMC	2 cut(s)	317, 374
BstZI	CGGCCG	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	5 cut(s)	149, 261, 444, 741, 789
BtgI	CCRYGG	1 cut(s)	429
BtrI	CACGTC	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	293, 383
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	3 cut(s)	331, 705, 733
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr10I	RCCGGY	3 cut(s)	145, 149, 798
Cfr13I	GGNCC	2 cut(s)	167, 260
Csp6I	GTAC	1 cut(s)	381
CspAI	ACCGGT	1 cut(s)	798
CviAII	CATG	4 cut(s)	330, 430, 446, 652
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	2 cut(s)	334, 688
DrdI	GACNNNNNNGTC	1 cut(s)	799
DseDI	GACNNNNNNGTC	1 cut(s)	799
EaeI	YGGCCR	3 cut(s)	147, 442, 739
EagI	CGGCCG	1 cut(s)	147
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	167
Eco52I	CGGCCG	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	107, 369
Eco88I	CYCGRG	1 cut(s)	541
Eco91I	GGTNACC	2 cut(s)	141, 596
EcoO109I	RGGNCCY	1 cut(s)	260
EcoO65I	GGTNACC	2 cut(s)	141, 596
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	3 cut(s)	373, 511, 784
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	4 cut(s)	333, 433, 449, 655
FaiI	YATR	9 cut(s)	21, 81, 165, 331, 359, 407, 431, 447, 653
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	4 cut(s)	329, 429, 445, 651
FauI	CCCGC	2 cut(s)	178, 460
FblI	GTMKAC	1 cut(s)	537
FokI	GGATG	2 cut(s)	300, 390
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	5 cut(s)	149, 261, 444, 741, 789
HapII	CCGG	3 cut(s)	146, 150, 799
Hin1II	CATG	4 cut(s)	333, 433, 449, 655
HincII	GTYRAC	2 cut(s)	538, 811
HindII	GTYRAC	2 cut(s)	538, 811
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	8 cut(s)	131, 389, 471, 481, 539, 632, 638, 659
HpaII	CCGG	3 cut(s)	146, 150, 799
HphI	GGTGA	4 cut(s)	135, 319, 605, 608
Hpy166II	GTNNAC	5 cut(s)	315, 499, 538, 613, 811
Hpy188I	TCNGA	6 cut(s)	130, 136, 388, 550, 637, 771
Hpy188III	TCNNGA	2 cut(s)	212, 279
Hpy8I	GTNNAC	5 cut(s)	315, 499, 538, 613, 811
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	3 cut(s)	273, 430, 538
HpyCH4III	ACNGT	3 cut(s)	179, 220, 352
HpyCH4IV	ACGT	2 cut(s)	111, 534
HpyCH4V	TGCA	9 cut(s)	155, 315, 329, 478, 504, 655, 671, 703, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 425, 652
HpyF3I	CTNAG	2 cut(s)	334, 688
HpySE526I	ACGT	2 cut(s)	111, 534
Hsp92II	CATG	4 cut(s)	333, 433, 449, 655
LmnI	GCTCC	1 cut(s)	590
MaeII	ACGT	2 cut(s)	111, 534
MaeIII	GTNAC	4 cut(s)	46, 141, 517, 596
MboII	GAAGA	2 cut(s)	5, 596
MfeI	CAATTG	1 cut(s)	455
MhlI	GDGCHC	2 cut(s)	317, 374
MlsI	TGGCCA	1 cut(s)	444
MluCI	AATT	6 cut(s)	22, 242, 322, 455, 578, 717
MluNI	TGGCCA	1 cut(s)	444
MlyI	GAGTC	5 cut(s)	125, 480, 533, 626, 632
MmeI	TCCRAC	1 cut(s)	794
MnlI	CCTC	4 cut(s)	240, 251, 442, 626
Mox20I	TGGCCA	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	444
MseI	TTAA	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	3 cut(s)	146, 150, 799
MspR9I	CCNGG	3 cut(s)	375, 513, 786
MunI	CAATTG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	3 cut(s)	375, 513, 786
MwoI	GCNNNNNNNGC	3 cut(s)	179, 425, 652
NcoI	CCATGG	1 cut(s)	429
NlaIII	CATG	4 cut(s)	333, 433, 449, 655
NlaIV	GGNNCC	2 cut(s)	169, 427
NmuCI	GTSAC	3 cut(s)	141, 517, 596
NspI	RCATGY	1 cut(s)	333
NspV	TTCGAA	1 cut(s)	816
PaeI	GCATGC	1 cut(s)	333
PaqCI	CACCTGC	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	389, 481, 659
PinAI	ACCGGT	1 cut(s)	798
PleI	GAGTC	5 cut(s)	125, 479, 533, 626, 632
PpsI	GAGTC	5 cut(s)	125, 479, 533, 626, 632
PsiI	TTATAA	1 cut(s)	359
Psp6I	CCWGG	3 cut(s)	373, 511, 784
PspEI	GGTNACC	2 cut(s)	141, 596
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	3 cut(s)	373, 511, 784
PspN4I	GGNNCC	2 cut(s)	169, 427
PspPI	GGNCC	2 cut(s)	167, 260
PstI	CTGCAG	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SalI	GTCGAC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	108
Sau96I	GGNCC	2 cut(s)	167, 260
SchI	GAGTC	5 cut(s)	125, 480, 533, 626, 632
ScrFI	CCNGG	3 cut(s)	375, 513, 786
SduI	GDGCHC	2 cut(s)	317, 374
SfcI	CTRYAG	2 cut(s)	219, 502
SfuI	TTCGAA	1 cut(s)	816
SinI	GGWCC	1 cut(s)	167
SphI	GCATGC	1 cut(s)	333
Sse9I	AATT	6 cut(s)	22, 242, 322, 455, 578, 717
SsiI	CCGC	3 cut(s)	171, 460, 467
StyD4I	CCNGG	3 cut(s)	373, 511, 784
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	179, 220, 352
TaiI	ACGT	2 cut(s)	114, 537
TaqI	TCGA	2 cut(s)	537, 816
TasI	AATT	6 cut(s)	22, 242, 322, 455, 578, 717
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	3 cut(s)	389, 481, 659
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	3 cut(s)	141, 517, 596
Tsp45I	GTSAC	3 cut(s)	141, 517, 596
TspDTI	ATGAA	2 cut(s)	15, 386
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	1 cut(s)	421
VneI	GTGCAC	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	2 cut(s)	322, 578
XceI	RCATGY	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.