Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Reverse (-)

25200771 .. 25202048

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028622

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTCTTGTTGTTCCACGCTCGTTGCCTATCTATGCTTTTGTGACATTGTTTTTAGTTCTACTAAACCTAAACCCAAGTTGTTGCGTCAACCCCAAACTATTGAATGTCTCAAGGCTTCAGTCTGACTCGTACTGGGAAGCGGCTCTCTCAACAACTCGGCCTTATTCGGACTGGGCACCCGCTGTTGCAACATGGTATGGAGACCCTGAGGGTGGTGGGACTAATGGAGGTGCATGTGCTTATGCCAATGATGTAGATCAGCCTCCGTTTTCTAAATTGGTTTCTGCTGGAGGGCCCTCATTGTTCAAATCAGGGAAAGGATGTGGAGCTTGTTATGAGGTCATGTGCACCGGTAATGCTGCGTGCTCGGGGAATCCTGTGACTGTTGTTATAACCGATAACTGCCCTGGAGGTCCGTGCGCTTCTAATGCTGTTCATTTTGATTTGAGTGGCCATGCTTTTGGAGCCATGGCCAATTCTGGCCAAGAATCTCAGCTACGGAATGCTGGAGTCCTTCACGTTCAGCATAGAAGAGTGGCGTGCGTTTATCCTGGTGTGGACATAACCTTCAGAGTGGACTCGGGTTCAAACCCTTACTATCTCGCTGTTGTAGTAGAATATGCAGCTGGACCTGGTGCCCTATCTGCACTCGAGCTTAAACAAGGTCGACGTGACTCAGTCTGGCTTCCCATGCAGCAATCTTGGGGTGCAGATTGGAAATTTAACTCCGGCTCACAGTTGCAGGGACCGTTATCTATTAGAATAACTGCAGATTCCGGCCAAACCCTAGTTGTAAATAATGTGATTCCGGCTGGCTGGCAGCCCGGTCAAATTTATCGCTCGGTTGTGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

287

Amino Acids

30.27

Weight (kDa)

6.4

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	96 - 176	4.9e-17	Lytic transglycolase
Expansin_C	PF01357	189 - 271	3.4e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	178, 638
AccI	GTMKAC	1 cut(s)	670
AciI	CCGC	2 cut(s)	143, 183
AcoI	YGGCCR	4 cut(s)	454, 474, 484, 781
AcsI	RAATTY	2 cut(s)	722, 834
AcuI	CTGAAG	2 cut(s)	104, 556
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	106, 310, 591
AjiI	CACGTC	1 cut(s)	674
AjnI	CCWGG	3 cut(s)	409, 553, 634
AluBI	AGCT	4 cut(s)	332, 499, 629, 658
AluI	AGCT	4 cut(s)	332, 499, 629, 658
Alw21I	GWGCWC	2 cut(s)	353, 371
Alw26I	GTCTC	2 cut(s)	115, 198
Alw44I	GTGCAC	1 cut(s)	349
Ama87I	CYCGRG	3 cut(s)	370, 583, 653
AoxI	GGCC	6 cut(s)	161, 296, 454, 474, 484, 781
ApaI	GGGCCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	4 cut(s)	362, 626, 697, 823
ApoI	RAATTY	2 cut(s)	722, 834
AsiGI	ACCGGT	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	5 cut(s)	296, 297, 416, 632, 749
AsuC2I	CCSGG	1 cut(s)	828
AvaI	CYCGRG	3 cut(s)	370, 583, 653
AvaII	GGWCC	3 cut(s)	416, 632, 749
AxyI	CCTNAGG	1 cut(s)	210
BaeGI	GKGCMC	4 cut(s)	181, 300, 353, 643
BalI	TGGCCA	3 cut(s)	456, 476, 486
BanI	GGYRCC	2 cut(s)	178, 638
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	353, 371
BbvI	GCAGC	4 cut(s)	349, 638, 709, 835
BciT130I	CCWGG	3 cut(s)	411, 555, 636
BcnI	CCSGG	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	115, 198
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	771
BisI	GCNGC	5 cut(s)	144, 363, 627, 698, 824
BlsI	GCNGC	5 cut(s)	145, 364, 628, 699, 825
Bme1390I	CCNGG	4 cut(s)	411, 555, 636, 828
Bme18I	GGWCC	3 cut(s)	416, 632, 749
BmeT110I	CYCGRG	3 cut(s)	370, 583, 653
BmgBI	CACGTC	1 cut(s)	674
BmgT120I	GGNCC	5 cut(s)	296, 297, 416, 632, 749
BmiI	GGNNCC	5 cut(s)	180, 298, 469, 640, 750
BmrFI	CCNGG	4 cut(s)	411, 555, 636, 828
BmrI	ACTGGG	2 cut(s)	145, 184
BmuI	ACTGGG	2 cut(s)	145, 184
BpmI	CTGGAG	3 cut(s)	312, 432, 531
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	828
BsaBI	GATNNNNATC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	409, 471
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	140, 179
Bse21I	CCTNAGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	3 cut(s)	411, 555, 636
BseDI	CCNNGG	2 cut(s)	409, 471
BseGI	GGATG	1 cut(s)	329
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	3 cut(s)	201, 509, 693
BseNI	ACTGG	2 cut(s)	140, 179
BseSI	GKGCMC	4 cut(s)	181, 300, 353, 643
BseXI	GCAGC	4 cut(s)	349, 638, 709, 835
BsgI	GTGCAG	2 cut(s)	633, 732
BshFI	GGCC	6 cut(s)	163, 298, 456, 476, 486, 783
BshNI	GGYRCC	2 cut(s)	178, 638
BshTI	ACCGGT	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	353, 371
BsiHKCI	CYCGRG	3 cut(s)	370, 583, 653
BsiSI	CCGG	5 cut(s)	354, 732, 780, 812, 828
BslFI	GGGAC	2 cut(s)	235, 762
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	115, 198
BsmFI	GGGAC	2 cut(s)	235, 762
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	6 cut(s)	163, 298, 456, 476, 486, 783
Bso31I	GGTCTC	1 cut(s)	198
BsoBI	CYCGRG	3 cut(s)	370, 583, 653
Bsp120I	GGGCCC	1 cut(s)	296
Bsp1286I	GDGCHC	5 cut(s)	181, 300, 353, 371, 643
Bsp143I	GATC	1 cut(s)	259
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	2 cut(s)	143, 183
BspANI	GGCC	6 cut(s)	163, 298, 456, 476, 486, 783
BspCNI	CTCAG	3 cut(s)	202, 508, 692
BspLI	GGNNCC	5 cut(s)	180, 298, 469, 640, 750
BspMAI	CTGCAG	1 cut(s)	775
BspT107I	GGYRCC	2 cut(s)	178, 638
BspTNI	GGTCTC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	140, 179
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	409, 471
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	411, 555, 636
Bst4CI	ACNGT	3 cut(s)	388, 741, 753
Bst6I	CTCTTC	1 cut(s)	529
BstC8I	GCNNGC	4 cut(s)	367, 544, 817, 821
BstDEI	CTNAG	3 cut(s)	210, 495, 679
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	2 cut(s)	115, 198
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	4 cut(s)	431, 467, 647, 694
BstNI	CCWGG	3 cut(s)	411, 555, 636
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	4 cut(s)	409, 553, 634, 826
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	4 cut(s)	181, 300, 353, 643
BstV1I	GCAGC	4 cut(s)	349, 638, 709, 835
BstXI	CCANNNNNNTGG	1 cut(s)	464
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	6 cut(s)	163, 298, 456, 476, 486, 783
BtgI	CCRYGG	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	1 cut(s)	329
Cac8I	GCNNGC	4 cut(s)	367, 544, 817, 821
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	5 cut(s)	296, 297, 416, 632, 749
CseI	GACGC	1 cut(s)	76
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	353
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	6 cut(s)	195, 237, 346, 458, 472, 694
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	3 cut(s)	210, 495, 679
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	4 cut(s)	454, 474, 484, 781
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	416, 632, 749
Eco57I	CTGAAG	2 cut(s)	104, 556
Eco81I	CCTNAGG	1 cut(s)	210
Eco88I	CYCGRG	3 cut(s)	370, 583, 653
EcoO109I	RGGNCCY	2 cut(s)	296, 297
EcoRII	CCWGG	3 cut(s)	409, 553, 634
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	6 cut(s)	198, 240, 349, 461, 475, 697
FaqI	GGGAC	2 cut(s)	235, 762
FatI	CATG	6 cut(s)	194, 236, 345, 457, 471, 693
FauI	CCCGC	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	670
Fnu4HI	GCNGC	5 cut(s)	144, 363, 627, 698, 824
FokI	GGATG	1 cut(s)	336
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	5 cut(s)	144, 363, 627, 698, 824
FspBI	CTAG	1 cut(s)	791
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	5 cut(s)	144, 363, 627, 698, 824
GsuI	CTGGAG	3 cut(s)	312, 432, 531
HaeIII	GGCC	6 cut(s)	163, 298, 456, 476, 486, 783
HapII	CCGG	5 cut(s)	354, 732, 780, 812, 828
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	6 cut(s)	198, 240, 349, 461, 475, 697
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HincII	GTYRAC	2 cut(s)	91, 671
HindII	GTYRAC	2 cut(s)	91, 671
HinfI	GANTC	8 cut(s)	128, 376, 491, 513, 581, 677, 776, 808
HpaII	CCGG	5 cut(s)	354, 732, 780, 812, 828
Hpy166II	GTNNAC	6 cut(s)	91, 351, 562, 580, 671, 853
Hpy188I	TCNGA	3 cut(s)	127, 172, 575
Hpy8I	GTNNAC	6 cut(s)	91, 351, 562, 580, 671, 853
Hpy99I	CGWCG	1 cut(s)	675
HpyAV	CCTTC	2 cut(s)	527, 580
HpyCH4III	ACNGT	3 cut(s)	388, 741, 753
HpyCH4IV	ACGT	2 cut(s)	522, 673
HpyCH4V	TGCA	9 cut(s)	191, 236, 351, 626, 650, 697, 713, 745, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	431, 467, 647, 694
HpyF3I	CTNAG	3 cut(s)	210, 495, 679
HpySE526I	ACGT	2 cut(s)	522, 673
Hsp92II	CATG	6 cut(s)	198, 240, 349, 461, 475, 697
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	329, 467
Lsp1109I	GCAGC	4 cut(s)	349, 638, 709, 835
MabI	ACCWGGT	1 cut(s)	634
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	2 cut(s)	522, 673
MaeIII	GTNAC	3 cut(s)	43, 382, 674
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	546
MhlI	GDGCHC	5 cut(s)	181, 300, 353, 371, 643
MlsI	TGGCCA	3 cut(s)	456, 476, 486
MluCI	AATT	4 cut(s)	278, 478, 722, 834
MluNI	TGGCCA	3 cut(s)	456, 476, 486
MlyI	GAGTC	4 cut(s)	122, 522, 575, 671
MnlI	CCTC	7 cut(s)	205, 224, 276, 287, 310, 334, 407
Mox20I	TGGCCA	3 cut(s)	456, 476, 486
MscI	TGGCCA	3 cut(s)	456, 476, 486
MseI	TTAA	2 cut(s)	660, 726
Msp20I	TGGCCA	3 cut(s)	456, 476, 486
MspA1I	CMGCKG	2 cut(s)	185, 629
MspI	CCGG	5 cut(s)	354, 732, 780, 812, 828
MspR9I	CCNGG	4 cut(s)	411, 555, 636, 828
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	3 cut(s)	411, 555, 636
MwoI	GCNNNNNNNGC	4 cut(s)	431, 467, 647, 694
NciI	CCSGG	1 cut(s)	828
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	198, 240, 349, 461, 475, 697
NlaIV	GGNNCC	5 cut(s)	180, 298, 469, 640, 750
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	3 cut(s)	43, 382, 674
NspI	RCATGY	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	653
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	4 cut(s)	376, 491, 776, 808
PflFI	GACNNNGTC	1 cut(s)	680
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	145, 364, 628, 699, 825
PleI	GAGTC	4 cut(s)	122, 521, 575, 671
PpsI	GAGTC	4 cut(s)	122, 521, 575, 671
PsiI	TTATAA	1 cut(s)	395
Psp6I	CCWGG	3 cut(s)	409, 553, 634
PspGI	CCWGG	3 cut(s)	409, 553, 634
PspN4I	GGNNCC	5 cut(s)	180, 298, 469, 640, 750
PspOMI	GGGCCC	1 cut(s)	296
PspPI	GGNCC	5 cut(s)	296, 297, 416, 632, 749
PspXI	VCTCGAGB	1 cut(s)	653
PstI	CTGCAG	1 cut(s)	775
PsyI	GACNNNGTC	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SalI	GTCGAC	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	660, 726
SatI	GCNGC	5 cut(s)	144, 363, 627, 698, 824
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	5 cut(s)	296, 297, 416, 632, 749
SchI	GAGTC	4 cut(s)	122, 522, 575, 671
ScrFI	CCNGG	4 cut(s)	411, 555, 636, 828
SduI	GDGCHC	5 cut(s)	181, 300, 353, 371, 643
SexAI	ACCWGGT	1 cut(s)	634
SfcI	CTRYAG	1 cut(s)	771
Sfr274I	CTCGAG	1 cut(s)	653
SinI	GGWCC	3 cut(s)	416, 632, 749
SlaI	CTCGAG	1 cut(s)	653
SmlI	CTYRAG	2 cut(s)	112, 653
SmoI	CTYRAG	2 cut(s)	112, 653
Sse9I	AATT	4 cut(s)	278, 478, 722, 834
SsiI	CCGC	2 cut(s)	143, 183
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	4 cut(s)	409, 553, 634, 826
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	388, 741, 753
TaiI	ACGT	2 cut(s)	525, 676
TaqI	TCGA	2 cut(s)	654, 670
TasI	AATT	4 cut(s)	278, 478, 722, 834
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	4 cut(s)	376, 491, 776, 808
Tru1I	TTAA	2 cut(s)	660, 726
Tru9I	TTAA	2 cut(s)	660, 726
TseFI	GTSAC	3 cut(s)	43, 382, 674
TseI	GCWGC	4 cut(s)	362, 626, 697, 823
Tsp45I	GTSAC	3 cut(s)	43, 382, 674
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	3 cut(s)	258, 408, 517
Tth111I	GACNNNGTC	1 cut(s)	680
VneI	GTGCAC	1 cut(s)	349
VpaK11BI	GGWCC	3 cut(s)	416, 632, 749
XapI	RAATTY	2 cut(s)	722, 834
XceI	RCATGY	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	670
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.