Rorug01G0198200

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003657
Physical Location & Seq
Forward (+)
27771396 .. 27771965
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0198200.1

Sequence Viewer

Length: 570 bp
ATGAAGTACCACTTTTGTTCTTCAGGTGCTTTTCTCTCCATCTTTATCATTCTTGTAACGATCTGTTTAACCATTGAAGCTCAAACCTGCAATCCAAGTGGCAAAATAGTGGGTAAAAGGCCTCCTCCGAAACAATGTAACCCTGAGAACCAGTCTGAATGCTGCAAAAAAGGTAAGCTCTACACCACTTACAAGTGCTCACCTCCGGTGTCCAAGCGTACAAAAGCAACCTTGACGATCAACAGCTTCGAGAAAGGTGGTGATGGTGGTGGACCGTCTGGATGTGACAATAAATTCCACTCGGATAACACCACGGTCGTGGCATTGTCCACCGGGTGGTTCAACAATAGGAAGAGGTGTTCACACTACATTACCATACATGGTAATGGAAGGACTGTGAAAGCCAAGGTTGTTGATGAGTGTGACTCCACAATGGGTTGTGATCCTGCTCATGATTACCAGCCTCCATGCCGTCACAACATAGTTGATGCCTCTCCAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCGACTGGGGTGAAATGCAGATATTCTGGTCTGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

189

Amino Acids

20.74

Weight (kDa)

8.7

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 27 - 189 3.4e-66 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 336
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 336
AfaI GTAC 2 cut(s) 8, 220
AfiI CCNNNNNNNGG 1 cut(s) 336
AgsI TTSAA 2 cut(s) 77, 343
AleI CACNNNNGTG 1 cut(s) 317
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 4 cut(s) 80, 178, 246, 500
AluI AGCT 4 cut(s) 80, 178, 246, 500
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 1 cut(s) 437
AoxI GGCC 2 cut(s) 119, 510
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 192, 272, 551
AvaII GGWCC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 47, 257
BceAI ACGGC 1 cut(s) 456
BcnI CCSGG 1 cut(s) 334
BfuAI ACCTGC 1 cut(s) 95
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 334
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 2 cut(s) 478, 553
BmuI ACTGGG 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 334
BsaJI CCNNGG 3 cut(s) 312, 405, 513
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 2 cut(s) 151, 539
BseDI CCNNGG 3 cut(s) 312, 405, 513
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 151, 539
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 121, 512
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 2 cut(s) 206, 333
BslI CCNNNNNNNGG 1 cut(s) 336
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 2 cut(s) 121, 512
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 60, 237, 442
BspANI GGCC 2 cut(s) 121, 512
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 437
BsrI ACTGG 2 cut(s) 151, 539
BssECI CCNNGG 3 cut(s) 312, 405, 513
BssMI GATC 3 cut(s) 60, 237, 442
BssT1I CCWWGG 2 cut(s) 405, 513
Bst4CI ACNGT 3 cut(s) 276, 316, 397
Bst6I CTCTTC 1 cut(s) 347
BstDEI CTNAG 1 cut(s) 144
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 287
BstKTI GATC 3 cut(s) 63, 240, 445
BstMBI GATC 3 cut(s) 60, 237, 442
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 149
BstXI CCANNNNNNTGG 2 cut(s) 319, 504
BsuRI GGCC 2 cut(s) 121, 512
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 287
BveI ACCTGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 7, 219
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 380, 452, 468
CviJI RGCY 8 cut(s) 80, 121, 178, 246, 404, 463, 500, 512
CviKI_1 RGCY 8 cut(s) 80, 121, 178, 246, 404, 463, 500, 512
CviQI GTAC 2 cut(s) 7, 219
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 62, 239, 444
DpnII GATC 3 cut(s) 60, 237, 442
DraIII CACNNNGTG 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
Eco130I CCWWGG 2 cut(s) 405, 513
Eco147I AGGCCT 2 cut(s) 121, 512
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 405, 513
ErhI CCWWGG 2 cut(s) 405, 513
FaeI CATG 3 cut(s) 383, 455, 471
FaiI YATR 5 cut(s) 377, 381, 453, 469, 482
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 3 cut(s) 379, 451, 467
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 2 cut(s) 121, 512
HapII CCGG 2 cut(s) 206, 333
Hin1II CATG 3 cut(s) 383, 455, 471
HinfI GANTC 1 cut(s) 425
HpaII CCGG 2 cut(s) 206, 333
HphI GGTGA 3 cut(s) 192, 272, 551
Hpy166II GTNNAC 3 cut(s) 272, 330, 362
Hpy188I TCNGA 4 cut(s) 129, 157, 304, 562
Hpy188III TCNNGA 3 cut(s) 250, 279, 452
Hpy8I GTNNAC 3 cut(s) 272, 330, 362
HpyAV CCTTC 2 cut(s) 384, 502
HpyCH4III ACNGT 3 cut(s) 276, 316, 397
HpyCH4V TGCA 3 cut(s) 90, 165, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 3 cut(s) 383, 455, 471
Kzo9I GATC 3 cut(s) 60, 237, 442
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 2 cut(s) 478, 553
MaeIII GTNAC 5 cut(s) 55, 137, 284, 422, 473
MalI GATC 3 cut(s) 62, 239, 444
MboI GATC 3 cut(s) 60, 237, 442
MboII GAAGA 2 cut(s) 12, 364
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 293
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 6 cut(s) 132, 135, 213, 348, 474, 502
MseI TTAA 2 cut(s) 68, 522
MslI CAYNNNNRTG 2 cut(s) 317, 384
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 2 cut(s) 206, 333
MspR9I CCNGG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 497
NciI CCSGG 1 cut(s) 334
NdeII GATC 3 cut(s) 60, 237, 442
NlaIII CATG 3 cut(s) 383, 455, 471
NmuCI GTSAC 3 cut(s) 284, 422, 473
OliI CACNNNNGTG 1 cut(s) 317
PagI TCATGA 1 cut(s) 451
PceI AGGCCT 2 cut(s) 121, 512
PctI GAATGC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 336
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PspPI GGNCC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 2 cut(s) 8, 220
RsaNI GTAC 2 cut(s) 7, 219
RseI CAYNNNNRTG 2 cut(s) 317, 384
SaqAI TTAA 2 cut(s) 68, 522
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 3 cut(s) 60, 237, 442
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 1 cut(s) 200
SfaNI GCATC 2 cut(s) 478, 553
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 317, 384
Sse9I AATT 1 cut(s) 293
SseBI AGGCCT 2 cut(s) 121, 512
StuI AGGCCT 2 cut(s) 121, 512
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 2 cut(s) 405, 513
TaaI ACNGT 3 cut(s) 276, 316, 397
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 293
Tru1I TTAA 2 cut(s) 68, 522
Tru9I TTAA 2 cut(s) 68, 522
TseFI GTSAC 3 cut(s) 284, 422, 473
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 3 cut(s) 284, 422, 473
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.