Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Reverse (-)

62419873 .. 62421685

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTAGTTTAAGAAGCATTTTGTACTTAGCAACTGTGTTTTGCTGCTTGTTTGAGCAGAGCTTTTCTTTTAATCCGAAGCAGTTGAACTTGTCACTCAGCGCCACCCAATGGGACACTGCCGGAGCTACTTGGTACGGCAGCCCTGATGGTTTTGGAAGTGACGGTGGATCTTGTGGGTATGGAGATGTAGTTTCACAAGCGCCATTCTCTTCCATGGTTACGGCAGTAGGTCCTTCTCTTTACAAATCCGGCAGGGAATGTGGAGCTTGCTATCAGATCAAATGTACCAAACATAAATCTTGTTCCGGCAAACCAGTAAGGGTGGTCATCACAGATTCTTGCCCTGGAGGGCCTTGTGCGTCCGATGCTGCACATTTTGACCTTAGTGGAACTTCATTTGGTGCCATGGCACTTCCTGGTCAAGGGGAGGAACTCCGCAATGCAGGAGTATTGGAAATCCAATTTGCACGCGTGGCATGTGATTATTCAGGAAAAACTATTGCATTCCACGTGGACCAGGGATCGAACTCGAACTACTTTGCTGCTGTGATCGAGTACGAAGAGGGAGATGGTGATCTTGGTAGTGTTGAGTTGAAGGACGCTTCCTCAACGGACAGTGAAGGTGGCGAGGAGTGGCGTGCCATGCAACAATCTTGGGGTGCAGTGTGGAAACTTGATGCAGGGTCAGCACTACATCCTCCACTGTCAATAAAGTTGACTTCTGGGTACTCAGGCCAGACATTGTTGGCTAAAAATGTGATTCCAAATGGGTGGCAACCTGGTGCTACCTACAGATCCGTGGTCAATTATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

272

Amino Acids

28.76

Weight (kDa)

4.97

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	41 - 163	6.4e-06	EXPB1-like domain 1
DPBB_1	PF03330	76 - 155	1.4e-17	Lytic transglycolase
Expansin_C	PF01357	168 - 256	1.5e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccII	CGCG	1 cut(s)	474
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	3 cut(s)	178, 532, 792
AcvI	CACGTG	1 cut(s)	514
AfaI	GTAC	5 cut(s)	26, 137, 289, 560, 731
AfiI	CCNNNNNNNGG	2 cut(s)	111, 425
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	88, 598
AjnI	CCWGG	4 cut(s)	346, 418, 519, 781
AluBI	AGCT	3 cut(s)	63, 128, 269
AluI	AGCT	3 cut(s)	63, 128, 269
AlwI	GGATC	3 cut(s)	178, 532, 792
AoxI	GGCC	2 cut(s)	353, 736
ApeKI	GCWGC	4 cut(s)	45, 141, 371, 545
AspLEI	GCGC	2 cut(s)	104, 205
AspS9I	GGNCC	3 cut(s)	233, 353, 517
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	233, 517
BanI	GGYRCC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	514
BbvI	GCAGC	4 cut(s)	32, 153, 358, 532
BccI	CCATC	2 cut(s)	143, 566
BceAI	ACGGC	2 cut(s)	154, 240
BciT130I	CCWGG	4 cut(s)	348, 420, 521, 783
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	793
BfoI	RGCGCY	2 cut(s)	105, 206
BisI	GCNGC	4 cut(s)	46, 142, 372, 546
BlsI	GCNGC	4 cut(s)	47, 143, 373, 547
Bme1390I	CCNGG	4 cut(s)	348, 420, 521, 783
Bme18I	GGWCC	2 cut(s)	233, 517
BmgT120I	GGNCC	3 cut(s)	233, 353, 517
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	4 cut(s)	348, 420, 521, 783
BmsI	GCATC	2 cut(s)	358, 670
BpmI	CTGGAG	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	5 cut(s)	216, 346, 408, 520, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 425
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	448
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	4 cut(s)	348, 420, 521, 783
BseDI	CCNNGG	5 cut(s)	216, 346, 408, 520, 801
BseGI	GGATG	1 cut(s)	697
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	2 cut(s)	111, 425
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	112, 747
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	4 cut(s)	32, 153, 358, 532
BsgI	GTGCAG	2 cut(s)	357, 684
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	2 cut(s)	355, 738
BshNI	GGYRCC	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	123, 252, 309
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	111, 425
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	355, 738
Bsp143I	GATC	6 cut(s)	170, 279, 524, 552, 577, 797
Bsp19I	CCATGG	2 cut(s)	216, 408
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	355, 738
BspCNI	CTCAG	2 cut(s)	111, 746
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	3 cut(s)	178, 532, 792
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	5 cut(s)	216, 346, 408, 520, 801
BssMI	GATC	6 cut(s)	170, 279, 524, 552, 577, 797
BssT1I	CCWWGG	2 cut(s)	216, 408
Bst2UI	CCWGG	4 cut(s)	348, 420, 521, 783
Bst4CI	ACNGT	4 cut(s)	37, 167, 620, 708
Bst6I	CTCTTC	2 cut(s)	217, 558
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	271, 472, 642
BstDEI	CTNAG	4 cut(s)	28, 98, 386, 733
BstDSI	CCRYGG	3 cut(s)	216, 408, 801
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	697
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	2 cut(s)	105, 206
BstHHI	GCGC	2 cut(s)	104, 205
BstKTI	GATC	6 cut(s)	173, 282, 527, 555, 580, 800
BstMBI	GATC	6 cut(s)	170, 279, 524, 552, 577, 797
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 476, 646, 689
BstNI	CCWGG	4 cut(s)	348, 420, 521, 783
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	4 cut(s)	346, 418, 519, 781
BstSFI	CTRYAG	1 cut(s)	793
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	4 cut(s)	32, 153, 358, 532
BstX2I	RGATCY	2 cut(s)	170, 797
BstXI	CCANNNNNNTGG	1 cut(s)	774
BstYI	RGATCY	2 cut(s)	170, 797
BsuRI	GGCC	2 cut(s)	355, 738
BtgI	CCRYGG	3 cut(s)	216, 408, 801
BtsCI	GGATG	1 cut(s)	697
BtsI	GCAGTG	2 cut(s)	117, 672
BtsIMutI	CAGTG	4 cut(s)	117, 625, 672, 704
Cac8I	GCNNGC	3 cut(s)	271, 472, 642
CfoI	GCGC	2 cut(s)	104, 205
Cfr13I	GGNCC	3 cut(s)	233, 353, 517
CseI	GACGC	2 cut(s)	351, 611
CsiI	ACCWGGT	1 cut(s)	781
Csp6I	GTAC	5 cut(s)	25, 136, 288, 559, 730
CviAII	CATG	4 cut(s)	217, 409, 480, 646
CviJI	RGCY	8 cut(s)	5, 63, 128, 144, 269, 355, 738, 752
CviKI_1	RGCY	8 cut(s)	5, 63, 128, 144, 269, 355, 738, 752
CviQI	GTAC	5 cut(s)	25, 136, 288, 559, 730
DdeI	CTNAG	4 cut(s)	28, 98, 386, 733
DpnI	GATC	6 cut(s)	172, 281, 526, 554, 579, 799
DpnII	GATC	6 cut(s)	170, 279, 524, 552, 577, 797
Eam1104I	CTCTTC	2 cut(s)	217, 558
EarI	CTCTTC	2 cut(s)	217, 558
Eco130I	CCWWGG	2 cut(s)	216, 408
Eco47I	GGWCC	2 cut(s)	233, 517
Eco72I	CACGTG	1 cut(s)	514
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	2 cut(s)	233, 353
EcoRII	CCWGG	4 cut(s)	346, 418, 519, 781
EcoT14I	CCWWGG	2 cut(s)	216, 408
ErhI	CCWWGG	2 cut(s)	216, 408
FaeI	CATG	4 cut(s)	220, 412, 483, 649
FaiI	YATR	7 cut(s)	183, 218, 297, 410, 481, 647, 817
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	4 cut(s)	216, 408, 479, 645
Fnu4HI	GCNGC	4 cut(s)	46, 142, 372, 546
FokI	GGATG	1 cut(s)	684
Fsp4HI	GCNGC	4 cut(s)	46, 142, 372, 546
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	103, 204
GluI	GCNGC	4 cut(s)	46, 142, 372, 546
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	2 cut(s)	105, 206
HaeIII	GGCC	2 cut(s)	355, 738
HapII	CCGG	3 cut(s)	123, 252, 309
HgaI	GACGC	2 cut(s)	351, 611
HhaI	GCGC	2 cut(s)	104, 205
Hin1II	CATG	4 cut(s)	220, 412, 483, 649
Hin6I	GCGC	2 cut(s)	102, 203
HinP1I	GCGC	2 cut(s)	102, 203
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HinfI	GANTC	2 cut(s)	338, 763
HpaII	CCGG	3 cut(s)	123, 252, 309
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	517, 720
Hpy188I	TCNGA	3 cut(s)	78, 279, 367
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	2 cut(s)	517, 720
HpyAV	CCTTC	3 cut(s)	246, 592, 617
HpyCH4III	ACNGT	4 cut(s)	37, 167, 620, 708
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	7 cut(s)	374, 446, 470, 506, 649, 665, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 476, 646, 689
HpyF3I	CTNAG	4 cut(s)	28, 98, 386, 733
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	4 cut(s)	220, 412, 483, 649
HspAI	GCGC	2 cut(s)	102, 203
Kzo9I	GATC	6 cut(s)	170, 279, 524, 552, 577, 797
LmnI	GCTCC	2 cut(s)	125, 266
Lsp1109I	GCAGC	4 cut(s)	32, 153, 358, 532
LweI	GCATC	2 cut(s)	358, 670
MabI	ACCWGGT	1 cut(s)	781
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	93, 161, 220
MalI	GATC	6 cut(s)	172, 281, 526, 554, 579, 799
MboI	GATC	6 cut(s)	170, 279, 524, 552, 577, 797
MboII	GAAGA	2 cut(s)	204, 575
MflI	RGATCY	2 cut(s)	170, 797
MluCI	AATT	2 cut(s)	464, 808
MluI	ACGCGT	1 cut(s)	472
MnlI	CCTC	6 cut(s)	344, 424, 559, 619, 625, 711
MseI	TTAA	2 cut(s)	11, 72
MspI	CCGG	3 cut(s)	123, 252, 309
MspR9I	CCNGG	4 cut(s)	348, 420, 521, 783
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	4 cut(s)	348, 420, 521, 783
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	4 cut(s)	368, 476, 646, 689
NcoI	CCATGG	2 cut(s)	216, 408
NdeII	GATC	6 cut(s)	170, 279, 524, 552, 577, 797
NlaIII	CATG	4 cut(s)	220, 412, 483, 649
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	93, 161
NspI	RCATGY	1 cut(s)	483
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	2 cut(s)	338, 763
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	47, 143, 373, 547
PmaCI	CACGTG	1 cut(s)	514
PmlI	CACGTG	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	514
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	4 cut(s)	346, 418, 519, 781
PspCI	CACGTG	1 cut(s)	514
PspGI	CCWGG	4 cut(s)	346, 418, 519, 781
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	3 cut(s)	233, 353, 517
PspPPI	RGGWCCY	1 cut(s)	233
PsrI	GAACNNNNNNTAC	2 cut(s)	521, 553
PsuI	RGATCY	2 cut(s)	170, 797
RsaI	GTAC	5 cut(s)	26, 137, 289, 560, 731
RsaNI	GTAC	5 cut(s)	25, 136, 288, 559, 730
SaqAI	TTAA	2 cut(s)	11, 72
SatI	GCNGC	4 cut(s)	46, 142, 372, 546
Sau3AI	GATC	6 cut(s)	170, 279, 524, 552, 577, 797
Sau96I	GGNCC	3 cut(s)	233, 353, 517
ScrFI	CCNGG	4 cut(s)	348, 420, 521, 783
SetI	ASST	9 cut(s)	65, 130, 235, 271, 387, 516, 628, 784, 794
SexAI	ACCWGGT	1 cut(s)	781
SfaNI	GCATC	2 cut(s)	358, 670
SfcI	CTRYAG	1 cut(s)	793
SinI	GGWCC	2 cut(s)	233, 517
Sse9I	AATT	2 cut(s)	464, 808
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	4 cut(s)	346, 418, 519, 781
StyI	CCWWGG	2 cut(s)	216, 408
TaaI	ACNGT	4 cut(s)	37, 167, 620, 708
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	527, 533, 555
TasI	AATT	2 cut(s)	464, 808
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	338, 763
Tru1I	TTAA	2 cut(s)	11, 72
Tru9I	TTAA	2 cut(s)	11, 72
TscAI	CASTG	4 cut(s)	124, 625, 672, 711
TseFI	GTSAC	2 cut(s)	93, 161
TseI	GCWGC	4 cut(s)	45, 141, 371, 545
Tsp45I	GTSAC	2 cut(s)	93, 161
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	2 cut(s)	629, 790
TspRI	CASTG	4 cut(s)	124, 625, 672, 711
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	233, 517
XagI	CCTNNNNNAGG	1 cut(s)	423
XceI	RCATGY	1 cut(s)	483
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.