Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Reverse (-)

5686002 .. 5688368

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTAGTTTAAGAAGCATTTTGTACTTAGCAACTGTGTTTTGCTGCTTGTTTGAGCAGAGCTTTTCTTTTAATCCGAAGCACTTGAACTTGTCACTCAGCGCCACCCATTGGGACACTGCCGGAGCTACCTGGTACGGCAGCCCTGATGGTTTTGGAAGTGACGGTGGGTCTTGTGGGTATGGAGATGTAGTTTCACAAGCTCCATTCTCTTCCATGGTTACGGCAGTAGGTCCTTCTCTTTACAAATCCGGCAGGGAATGTGGAGCTTGCTATCAGATCAAATGTACCAAACATAAATCTTGTTCCGGCAAACCAGTAAGGGTGGTCATCACAGATTCTTGCCCTGGAGGGCCTTGTGCGTCCGATGCTGCACATTTTGACCTTAGTGGAACTTCATTTGGTGCCATGGCACTTCCTGGCCAAGGGGAGGAACTCCGCAATGCAGGAGTATTGGAAATCCAATTTGCACGCGTGGCATGTGATTATTCAGGAAAAACCATTGCATTCCACGTGGACCAGGGATCGAACTCGAACTACTTTGCTGCTGTGATCGAGTATGAAGAGGGAGATGGTGATCTTGGTAGTGTTGAGTTGAAGGACGCTTCCTCAACGGACAGTGAAGGTGGCGAGGAGTGGCGTGCCATGCAACAATCTTGGGGTGCAGTGTGGAAACTTGATGCAGGGTCAGCACTACATCCACCACTGTCAATAAAGTTGACTTCTGGGTACTCAGGCCAGACCTTGTTGGCTAAAAATGTGATTCCAATTGGGTGGCAACCTGGTGCTACCTACAGATCCGTGGTCAATTATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

272

Amino Acids

28.78

Weight (kDa)

5.18

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	41 - 163	6.4e-06	EXPB1-like domain 1
DPBB_1	PF03330	76 - 155	1.4e-17	Lytic transglycolase
Expansin_C	PF01357	168 - 256	1.5e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccII	CGCG	1 cut(s)	474
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	2 cut(s)	532, 792
AcoI	YGGCCR	1 cut(s)	421
AcvI	CACGTG	1 cut(s)	514
AfaI	GTAC	4 cut(s)	26, 137, 289, 731
AfiI	CCNNNNNNNGG	3 cut(s)	111, 425, 430
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	88, 598
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	5 cut(s)	131, 346, 418, 519, 781
AluBI	AGCT	4 cut(s)	63, 128, 203, 269
AluI	AGCT	4 cut(s)	63, 128, 203, 269
AlwI	GGATC	2 cut(s)	532, 792
AoxI	GGCC	3 cut(s)	353, 421, 736
ApeKI	GCWGC	4 cut(s)	45, 141, 371, 545
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	233, 353, 517
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	233, 517
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	514
BbvI	GCAGC	4 cut(s)	32, 153, 358, 532
BccI	CCATC	2 cut(s)	143, 566
BceAI	ACGGC	2 cut(s)	154, 240
BciT130I	CCWGG	5 cut(s)	133, 348, 420, 521, 783
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	793
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	4 cut(s)	46, 142, 372, 546
BlsI	GCNGC	4 cut(s)	47, 143, 373, 547
Bme1390I	CCNGG	5 cut(s)	133, 348, 420, 521, 783
Bme18I	GGWCC	2 cut(s)	233, 517
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	233, 353, 517
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	5 cut(s)	133, 348, 420, 521, 783
BmsI	GCATC	2 cut(s)	358, 670
BpmI	CTGGAG	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	6 cut(s)	216, 346, 408, 424, 520, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 425, 430
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	2 cut(s)	448, 501
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	5 cut(s)	133, 348, 420, 521, 783
BseDI	CCNNGG	6 cut(s)	216, 346, 408, 424, 520, 801
BseGI	GGATG	1 cut(s)	697
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	3 cut(s)	111, 425, 430
BseMI	GCAATG	2 cut(s)	448, 501
BseMII	CTCAG	2 cut(s)	112, 747
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	4 cut(s)	32, 153, 358, 532
BsgI	GTGCAG	2 cut(s)	357, 684
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	3 cut(s)	355, 423, 738
BshNI	GGYRCC	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	123, 252, 309
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	111, 425, 430
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	355, 423, 738
Bsp143I	GATC	5 cut(s)	279, 524, 552, 577, 797
Bsp19I	CCATGG	2 cut(s)	216, 408
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	3 cut(s)	355, 423, 738
BspCNI	CTCAG	2 cut(s)	111, 746
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	532, 792
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	2 cut(s)	448, 501
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	6 cut(s)	216, 346, 408, 424, 520, 801
BssMI	GATC	5 cut(s)	279, 524, 552, 577, 797
BssT1I	CCWWGG	3 cut(s)	216, 408, 424
Bst2UI	CCWGG	5 cut(s)	133, 348, 420, 521, 783
Bst4CI	ACNGT	4 cut(s)	37, 167, 620, 708
Bst6I	CTCTTC	2 cut(s)	217, 558
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	271, 472, 642
BstDEI	CTNAG	4 cut(s)	28, 98, 386, 733
BstDSI	CCRYGG	3 cut(s)	216, 408, 801
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	697
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	5 cut(s)	282, 527, 555, 580, 800
BstMBI	GATC	5 cut(s)	279, 524, 552, 577, 797
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 476, 646, 689
BstNI	CCWGG	5 cut(s)	133, 348, 420, 521, 783
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	5 cut(s)	131, 346, 418, 519, 781
BstSFI	CTRYAG	1 cut(s)	793
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	4 cut(s)	32, 153, 358, 532
BstX2I	RGATCY	1 cut(s)	797
BstXI	CCANNNNNNTGG	1 cut(s)	774
BstYI	RGATCY	1 cut(s)	797
BsuRI	GGCC	3 cut(s)	355, 423, 738
BtgI	CCRYGG	3 cut(s)	216, 408, 801
BtsCI	GGATG	1 cut(s)	697
BtsI	GCAGTG	2 cut(s)	117, 672
BtsIMutI	CAGTG	4 cut(s)	117, 625, 672, 704
Cac8I	GCNNGC	3 cut(s)	271, 472, 642
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	3 cut(s)	233, 353, 517
CseI	GACGC	2 cut(s)	351, 611
CsiI	ACCWGGT	2 cut(s)	131, 781
Csp6I	GTAC	4 cut(s)	25, 136, 288, 730
CviAII	CATG	4 cut(s)	217, 409, 480, 646
CviQI	GTAC	4 cut(s)	25, 136, 288, 730
DdeI	CTNAG	4 cut(s)	28, 98, 386, 733
DpnI	GATC	5 cut(s)	281, 526, 554, 579, 799
DpnII	GATC	5 cut(s)	279, 524, 552, 577, 797
DriI	GACNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	217, 558
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EarI	CTCTTC	2 cut(s)	217, 558
Eco130I	CCWWGG	3 cut(s)	216, 408, 424
Eco47I	GGWCC	2 cut(s)	233, 517
Eco72I	CACGTG	1 cut(s)	514
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	2 cut(s)	233, 353
EcoRII	CCWGG	5 cut(s)	131, 346, 418, 519, 781
EcoT14I	CCWWGG	3 cut(s)	216, 408, 424
ErhI	CCWWGG	3 cut(s)	216, 408, 424
FaeI	CATG	4 cut(s)	220, 412, 483, 649
FaiI	YATR	8 cut(s)	183, 218, 297, 410, 481, 561, 647, 817
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	4 cut(s)	216, 408, 479, 645
Fnu4HI	GCNGC	4 cut(s)	46, 142, 372, 546
FokI	GGATG	1 cut(s)	684
Fsp4HI	GCNGC	4 cut(s)	46, 142, 372, 546
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	46, 142, 372, 546
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	355, 423, 738
HapII	CCGG	3 cut(s)	123, 252, 309
HgaI	GACGC	2 cut(s)	351, 611
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	220, 412, 483, 649
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HinfI	GANTC	2 cut(s)	338, 763
HpaII	CCGG	3 cut(s)	123, 252, 309
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	517, 720
Hpy188I	TCNGA	3 cut(s)	78, 279, 367
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	2 cut(s)	517, 720
HpyAV	CCTTC	3 cut(s)	246, 592, 617
HpyCH4III	ACNGT	4 cut(s)	37, 167, 620, 708
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	7 cut(s)	374, 446, 470, 506, 649, 665, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 476, 646, 689
HpyF3I	CTNAG	4 cut(s)	28, 98, 386, 733
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	4 cut(s)	220, 412, 483, 649
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	5 cut(s)	279, 524, 552, 577, 797
LmnI	GCTCC	3 cut(s)	125, 208, 266
Lsp1109I	GCAGC	4 cut(s)	32, 153, 358, 532
LweI	GCATC	2 cut(s)	358, 670
MabI	ACCWGGT	2 cut(s)	131, 781
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	93, 161, 220
MalI	GATC	5 cut(s)	281, 526, 554, 579, 799
MboI	GATC	5 cut(s)	279, 524, 552, 577, 797
MboII	GAAGA	2 cut(s)	204, 575
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	797
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	3 cut(s)	464, 768, 808
MluI	ACGCGT	1 cut(s)	472
MluNI	TGGCCA	1 cut(s)	423
MnlI	CCTC	5 cut(s)	344, 424, 559, 619, 625
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	2 cut(s)	11, 72
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	3 cut(s)	123, 252, 309
MspR9I	CCNGG	5 cut(s)	133, 348, 420, 521, 783
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	5 cut(s)	133, 348, 420, 521, 783
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	4 cut(s)	368, 476, 646, 689
NcoI	CCATGG	2 cut(s)	216, 408
NdeII	GATC	5 cut(s)	279, 524, 552, 577, 797
NlaIII	CATG	4 cut(s)	220, 412, 483, 649
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	93, 161
NspI	RCATGY	1 cut(s)	483
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	2 cut(s)	338, 763
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	47, 143, 373, 547
PmaCI	CACGTG	1 cut(s)	514
PmlI	CACGTG	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	514
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	5 cut(s)	131, 346, 418, 519, 781
PspCI	CACGTG	1 cut(s)	514
PspGI	CCWGG	5 cut(s)	131, 346, 418, 519, 781
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	3 cut(s)	233, 353, 517
PspPPI	RGGWCCY	1 cut(s)	233
PsrI	GAACNNNNNNTAC	2 cut(s)	521, 553
PsuI	RGATCY	1 cut(s)	797
RsaI	GTAC	4 cut(s)	26, 137, 289, 731
RsaNI	GTAC	4 cut(s)	25, 136, 288, 730
SaqAI	TTAA	2 cut(s)	11, 72
SatI	GCNGC	4 cut(s)	46, 142, 372, 546
Sau3AI	GATC	5 cut(s)	279, 524, 552, 577, 797
Sau96I	GGNCC	3 cut(s)	233, 353, 517
ScrFI	CCNGG	5 cut(s)	133, 348, 420, 521, 783
SexAI	ACCWGGT	2 cut(s)	131, 781
SfaNI	GCATC	2 cut(s)	358, 670
SfcI	CTRYAG	1 cut(s)	793
SinI	GGWCC	2 cut(s)	233, 517
Sse9I	AATT	3 cut(s)	464, 768, 808
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	5 cut(s)	131, 346, 418, 519, 781
StyI	CCWWGG	3 cut(s)	216, 408, 424
TaaI	ACNGT	4 cut(s)	37, 167, 620, 708
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	527, 533, 555
TasI	AATT	3 cut(s)	464, 768, 808
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	338, 763
Tru1I	TTAA	2 cut(s)	11, 72
Tru9I	TTAA	2 cut(s)	11, 72
TscAI	CASTG	4 cut(s)	124, 625, 672, 711
TseFI	GTSAC	2 cut(s)	93, 161
TseI	GCWGC	4 cut(s)	45, 141, 371, 545
Tsp45I	GTSAC	2 cut(s)	93, 161
TspDTI	ATGAA	2 cut(s)	387, 576
TspGWI	ACGGA	2 cut(s)	629, 790
TspRI	CASTG	4 cut(s)	124, 625, 672, 711
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	233, 517
XagI	CCTNNNNNAGG	1 cut(s)	423
XceI	RCATGY	1 cut(s)	483
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.