Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Forward (+)

31921118 .. 31923239

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1250700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCCACCCTCCATCTGCCATTGCCTGGTTTAACAACCCTTTTGAACTTAATCACTCTTTTTTGCTGCTTTAATATCTGCTTCGCCGTTAATCGAAAGCACTTAAACTTGTCAGCCGCTGCCACCGATTGGTCCCCTGCCGGAGCTACTTGGTATGGCAGTCCTGATGGCGCCGGAAGTGACGGAGGGGCTTGTGGGTATGGAAATTTAGTGTCACAAGCTCCATTCTCTTCCATGATTACTAGTATAGGCCCTTCTCTGTACAAATCAGGCAAAGAATGTGGAGCTTGCTATCAGGTAAAATGTACCAACCATCCAGCTTGTTCTGGCAAACCGGTGAGGGTGATCATTACCGACTTTTGCGCCGGAGGGCCTCGCGCCTCCGAACCGGCACATTTCGACCTTAGTGGTACCGCGTTTGGTGCTATGGCACTTCCCGGCCAACAAGAAAAACTACGCGATGCCGGAGTTTTGCAGATTCAATTCGCACGTGTGGCATGTGATTATTCAGGAAAAACAATCGCATTCCACGTGGATCAAGGATCAAACCCAAACTACTTTGCGGCTGTGATTGAATTCGAAGCCGGAGATGGTGATCTTGCCGGCGTTGAGTTGAAGGAAACTTCGTCATCGTCCGGTGGAGGCGAATGGCGAGCCATGCAGCAATCATGGGGTGCAGTGTGGAAGCTTGATGCCGGGGCAGAATTGCATCCTCCACTGTCGATAAGGTTGACATCTCTGTATTCAGATGAGACTTTGTTGGCCAAAGATGTAATTCCAGTTGGGTGGAAACCCGGTGCCACATATAGATCTTTGGTCAATTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

277

Amino Acids

29.13

Weight (kDa)

5.95

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	85 - 161	4.9e-17	Lytic transglycolase
Expansin_C	PF01357	174 - 260	6.2e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	3 cut(s)	170, 410, 797
AccB7I	CCANNNNNTGG	2 cut(s)	26, 129
AccII	CGCG	3 cut(s)	378, 416, 459
AciI	CCGC	3 cut(s)	117, 414, 563
AclWI	GGATC	2 cut(s)	543, 550
AcoI	YGGCCR	3 cut(s)	3, 439, 762
AcsI	RAATTY	2 cut(s)	205, 575
AcvI	CACGTG	2 cut(s)	491, 532
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	3 cut(s)	263, 307, 412
AfiI	CCNNNNNNNGG	2 cut(s)	26, 129
AflIII	ACRYGT	1 cut(s)	490
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	4 cut(s)	46, 482, 575, 616
AhlI	ACTAGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	5 cut(s)	146, 221, 287, 320, 688
AluI	AGCT	5 cut(s)	146, 221, 287, 320, 688
Alw26I	GTCTC	1 cut(s)	746
AlwI	GGATC	2 cut(s)	543, 550
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	5 cut(s)	3, 250, 371, 439, 762
ApeKI	GCWGC	3 cut(s)	66, 119, 661
ApoI	RAATTY	2 cut(s)	205, 575
AsiGI	ACCGGT	1 cut(s)	334
Asp718I	GGTACC	1 cut(s)	410
AspLEI	GCGC	3 cut(s)	173, 365, 380
AspS9I	GGNCC	3 cut(s)	132, 251, 371
AsuC2I	CCSGG	3 cut(s)	438, 697, 795
AsuHPI	GGTGA	3 cut(s)	349, 355, 605
AsuII	TTCGAA	1 cut(s)	579
AvaII	GGWCC	1 cut(s)	132
BalI	TGGCCA	2 cut(s)	5, 764
BanI	GGYRCC	3 cut(s)	170, 410, 797
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BbrPI	CACGTG	2 cut(s)	491, 532
BbvI	GCAGC	3 cut(s)	53, 106, 673
BccI	CCATC	4 cut(s)	21, 161, 321, 584
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	345
BcnI	CCSGG	3 cut(s)	438, 697, 795
BcoDI	GTCTC	1 cut(s)	746
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	174
BglII	AGATCT	1 cut(s)	809
BisI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
BlsI	GCNGC	5 cut(s)	68, 118, 121, 565, 663
Bme1390I	CCNGG	4 cut(s)	27, 438, 697, 795
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	132, 251, 371
BmiI	GGNNCC	4 cut(s)	134, 172, 412, 799
BmrFI	CCNGG	4 cut(s)	27, 438, 697, 795
BmsI	GCATC	3 cut(s)	451, 682, 718
Bpu14I	TTCGAA	1 cut(s)	579
BpuMI	CCSGG	3 cut(s)	438, 697, 795
BsaAI	YACGTR	2 cut(s)	491, 532
BsaBI	GATNNNNATC	1 cut(s)	594
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	2 cut(s)	334, 635
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 129
Bse118I	RCCGGY	3 cut(s)	334, 388, 602
Bse1I	ACTGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	2 cut(s)	313, 709
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	2 cut(s)	26, 129
BseMI	GCAATG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	779
BseXI	GCAGC	3 cut(s)	53, 106, 673
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	3 cut(s)	378, 416, 459
BshFI	GGCC	5 cut(s)	5, 252, 373, 441, 764
BshNI	GGYRCC	3 cut(s)	170, 410, 797
BshTI	ACCGGT	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	26, 129
BsmAI	GTCTC	1 cut(s)	746
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	5 cut(s)	5, 252, 373, 441, 764
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	345, 535, 542, 595, 809
BspACI	CCGC	3 cut(s)	117, 414, 563
BspANI	GGCC	5 cut(s)	5, 252, 373, 441, 764
BspFNI	CGCG	3 cut(s)	378, 416, 459
BspLI	GGNNCC	4 cut(s)	134, 172, 412, 799
BspPI	GGATC	2 cut(s)	543, 550
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	3 cut(s)	170, 410, 797
BsrDI	GCAATG	1 cut(s)	20
BsrFI	RCCGGY	3 cut(s)	334, 388, 602
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	779
BssAI	RCCGGY	3 cut(s)	334, 388, 602
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	5 cut(s)	345, 535, 542, 595, 809
BssNI	GRCGYC	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	720
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	171
BstAUI	TGTACA	1 cut(s)	261
BstBAI	YACGTR	2 cut(s)	491, 532
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	289, 604, 654
BstDEI	CTNAG	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	313, 709
BstFNI	CGCG	3 cut(s)	378, 416, 459
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	3 cut(s)	173, 365, 380
BstKTI	GATC	5 cut(s)	348, 538, 545, 598, 812
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	5 cut(s)	345, 535, 542, 595, 809
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 494, 658
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	4 cut(s)	25, 436, 695, 793
BstUI	CGCG	3 cut(s)	378, 416, 459
BstV1I	GCAGC	3 cut(s)	53, 106, 673
BstX2I	RGATCY	1 cut(s)	809
BstXI	CCANNNNNNTGG	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	809
BsuRI	GGCC	5 cut(s)	5, 252, 373, 441, 764
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	313, 709
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	2 cut(s)	684, 716
Cac8I	GCNNGC	3 cut(s)	289, 604, 654
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	3 cut(s)	173, 365, 380
Cfr10I	RCCGGY	3 cut(s)	334, 388, 602
Cfr13I	GGNCC	3 cut(s)	132, 251, 371
Csp6I	GTAC	3 cut(s)	262, 306, 411
CspAI	ACCGGT	1 cut(s)	334
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	4 cut(s)	235, 498, 658, 669
CviQI	GTAC	3 cut(s)	262, 306, 411
DdeI	CTNAG	1 cut(s)	404
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	5 cut(s)	347, 537, 544, 597, 811
DpnII	GATC	5 cut(s)	345, 535, 542, 595, 809
EaeI	YGGCCR	3 cut(s)	3, 439, 762
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	132
Eco72I	CACGTG	2 cut(s)	491, 532
EcoO109I	RGGNCCY	2 cut(s)	251, 371
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	25
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
FaeI	CATG	4 cut(s)	238, 501, 661, 672
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	4 cut(s)	234, 497, 657, 668
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
FokI	GGATG	2 cut(s)	300, 696
Fsp4HI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	3 cut(s)	172, 364, 379
GluI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	5 cut(s)	5, 252, 373, 441, 764
HhaI	GCGC	3 cut(s)	173, 365, 380
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	4 cut(s)	238, 501, 661, 672
Hin6I	GCGC	3 cut(s)	171, 363, 378
HinP1I	GCGC	3 cut(s)	171, 363, 378
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	3 cut(s)	349, 355, 605
Hpy166II	GTNNAC	1 cut(s)	732
Hpy188I	TCNGA	2 cut(s)	385, 748
Hpy188III	TCNNGA	2 cut(s)	164, 510
Hpy8I	GTNNAC	1 cut(s)	732
HpyAV	CCTTC	2 cut(s)	264, 610
HpyCH4III	ACNGT	1 cut(s)	720
HpyCH4IV	ACGT	2 cut(s)	490, 531
HpyCH4V	TGCA	4 cut(s)	475, 661, 677, 709
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 494, 658
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	2 cut(s)	490, 531
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	238, 501, 661, 672
HspAI	GCGC	3 cut(s)	171, 363, 378
KasI	GGCGCC	1 cut(s)	170
KpnI	GGTACC	1 cut(s)	414
KroI	GCCGGC	1 cut(s)	602
KroNI	GCCGGC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	5 cut(s)	345, 535, 542, 595, 809
LmnI	GCTCC	3 cut(s)	143, 226, 284
Lsp1109I	GCAGC	3 cut(s)	53, 106, 673
LweI	GCATC	3 cut(s)	451, 682, 718
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	2 cut(s)	490, 531
MaeIII	GTNAC	2 cut(s)	179, 213
MalI	GATC	5 cut(s)	347, 537, 544, 597, 811
MboI	GATC	5 cut(s)	345, 535, 542, 595, 809
MboII	GAAGA	1 cut(s)	222
MflI	RGATCY	1 cut(s)	809
MlsI	TGGCCA	2 cut(s)	5, 764
MluCI	AATT	6 cut(s)	205, 482, 575, 704, 774, 820
MluNI	TGGCCA	2 cut(s)	5, 764
Mly113I	GGCGCC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	20, 179, 333, 362, 384, 391, 635, 723
Mox20I	TGGCCA	2 cut(s)	5, 764
MroNI	GCCGGC	1 cut(s)	602
MscI	TGGCCA	2 cut(s)	5, 764
MseI	TTAA	6 cut(s)	32, 50, 72, 90, 104, 829
Msp20I	TGGCCA	2 cut(s)	5, 764
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	4 cut(s)	27, 438, 697, 795
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	3 cut(s)	378, 416, 459
MwoI	GCNNNNNNNGC	3 cut(s)	422, 494, 658
NaeI	GCCGGC	1 cut(s)	604
NarI	GGCGCC	1 cut(s)	171
NciI	CCSGG	3 cut(s)	438, 697, 795
NdeII	GATC	5 cut(s)	345, 535, 542, 595, 809
NgoMIV	GCCGGC	1 cut(s)	602
NlaIII	CATG	4 cut(s)	238, 501, 661, 672
NlaIV	GGNNCC	4 cut(s)	134, 172, 412, 799
NmuCI	GTSAC	2 cut(s)	179, 213
NspI	RCATGY	1 cut(s)	501
NspV	TTCGAA	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PctI	GAATGC	1 cut(s)	524
PdiI	GCCGGC	1 cut(s)	604
PfeI	GAWTC	1 cut(s)	478
PflMI	CCANNNNNTGG	2 cut(s)	26, 129
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	68, 118, 121, 565, 663
PluTI	GGCGCC	1 cut(s)	174
PmaCI	CACGTG	2 cut(s)	491, 532
PmlI	CACGTG	2 cut(s)	491, 532
Ppu21I	YACGTR	2 cut(s)	491, 532
Psp6I	CCWGG	1 cut(s)	25
PspCI	CACGTG	2 cut(s)	491, 532
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	4 cut(s)	134, 172, 412, 799
PspPI	GGNCC	3 cut(s)	132, 251, 371
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	809
RsaI	GTAC	3 cut(s)	263, 307, 412
RsaNI	GTAC	3 cut(s)	262, 306, 411
SaqAI	TTAA	6 cut(s)	32, 50, 72, 90, 104, 829
SatI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
Sau3AI	GATC	5 cut(s)	345, 535, 542, 595, 809
Sau96I	GGNCC	3 cut(s)	132, 251, 371
ScrFI	CCNGG	4 cut(s)	27, 438, 697, 795
SfaNI	GCATC	3 cut(s)	451, 682, 718
SfoI	GGCGCC	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	1 cut(s)	132
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	6 cut(s)	205, 482, 575, 704, 774, 820
SsiI	CCGC	3 cut(s)	117, 414, 563
SspDI	GGCGCC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	25, 436, 695, 793
TaaI	ACNGT	1 cut(s)	720
TaiI	ACGT	2 cut(s)	493, 534
TaqI	TCGA	4 cut(s)	94, 399, 579, 722
TasI	AATT	6 cut(s)	205, 482, 575, 704, 774, 820
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	2 cut(s)	119, 566
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	6 cut(s)	32, 50, 72, 90, 104, 829
Tru9I	TTAA	6 cut(s)	32, 50, 72, 90, 104, 829
TscAI	CASTG	2 cut(s)	684, 723
TseFI	GTSAC	2 cut(s)	179, 213
TseI	GCWGC	3 cut(s)	66, 119, 661
Tsp45I	GTSAC	2 cut(s)	179, 213
TspDTI	ATGAA	1 cut(s)	815
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	684, 723
Van91I	CCANNNNNTGG	2 cut(s)	26, 129
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	205, 575
XceI	RCATGY	1 cut(s)	501
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.