Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003657

Physical Location & Seq

Genomic Coordinates Forward (+)

23722701 .. 23724477

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCCACCCTCCATCTGCCATTGCCTGGTTTAACAACCCTTTTGAACTTAATCACTCTTTTTTGCTGCTTTAATATCTGCTTTGCCGTTAATCGAAAGCACTTAAACTTGTCAGCCGCTGCCACCGATTGGTCCCCTGCCGGAGCTACTTGGTATGGCAGTCCCGATGGCGCCGGAAGTGACGGAGGGGCTTGTGGGTATGGAAATTTAGTGTCACAAGCTCCATTCTCTTCCATGATTACTAGTATAGGCCCTTCTCTGTACAAATCAGGCAAAGAATGTGGAGCTTGCTATCAGGTAAAATGTACCAACCATCCAGCTTGTTCTGGCAAACCGGTGAGGGTGGTCATTACCGACTTTTGCCCCGGAGGGCCTTGCGCCTCCGAACCGGCACATTTCGACCTTAGCGGTACCGCATTCGGCGCTATGGCACTTCCCGGCCAACAAGAAAAACTACGCGATGCCGGAGTTTTGCAGATTCAATTCGCACGTGTGGCATGTGATTATTCAGGACAAACAATCGCATTCCACGTGGATCAAGGATCAAACCCAAACTACTTCGCGGCTGTGATTGAATTCGAAGACGGAGATGGTGATCTTGCCGGCGTTGAGGTGAAGGAAACTTCGTCATCGAACGGTGGAGGCGAATGGCGAGCCATGCAGCAATCCTGGGGTGCAGTGTGGAAGCTTGATGCCGGGGCAGAATTACATCCTCCACTGTCGATAAGGTTGACATCTCTGTATTCAGATGAGACTTTGTTGGCCAAGGATGTAATTCCAGTTGGGTGGAAACCCGGTGCCACTTACCGATCTTTGGTCAATTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

277

Amino Acids

29.14

Weight (kDa)

5.42

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65680
fragaria_vesca	FvH4_2g16510 FvH4_7g10960 FvH4_7g27130 FvH4_7g27131
malus_domestica	MD07G1113600.v1.1 MD07G1250600.v1.1 MD07G1250700.v1.1
prunus_persica	Prupe.2G136500_v2.0.a1 Prupe.2G274400_v2.0.a1
pyrus_communis	pycom07g09830 pycom07g22360
rosa_chinensis	RchiOBHm_Chr1g0348851 RchiOBHm_Chr1g0373921
rosa_laevigata	RLG00000026795 RLG00000028622
rosa_multiflora	Rmu_sc0000156.1_g000005 Rmu_sc0002022.1_g000002 Rmu_sc0008766.1_g000004
rosa_roxburghii	Rroxscaffold_4G00283900 Rroxscaffold_4G00306540
rosa_rugosa	Rorug01G0198200 Rorug01G0198300 Rorug01G0379700
rosa_samantha	Rh1AG215500 Rh1AG390000 Rh1BG181900 Rh1BG354300 Rh1CG200000 Rh1CG367400 Rh1DG211700 Rh1DG385000
rosa_wichuraiana	Rw1G018270 Rw1G018380 Rw1G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	3 cut(s)	170, 410, 797
AccB7I	CCANNNNNTGG	2 cut(s)	26, 129
AccII	CGCG	2 cut(s)	459, 563
AciI	CCGC	4 cut(s)	117, 408, 414, 563
AclWI	GGATC	2 cut(s)	543, 550
AcoI	YGGCCR	3 cut(s)	3, 439, 762
AcsI	RAATTY	2 cut(s)	205, 575
AcvI	CACGTG	2 cut(s)	491, 532
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	3 cut(s)	263, 307, 412
AfiI	CCNNNNNNNGG	3 cut(s)	26, 129, 814
AflIII	ACRYGT	1 cut(s)	490
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	46, 482, 575
AhlI	ACTAGT	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	25, 668
AluBI	AGCT	5 cut(s)	146, 221, 287, 320, 688
AluI	AGCT	5 cut(s)	146, 221, 287, 320, 688
Alw26I	GTCTC	1 cut(s)	746
AlwI	GGATC	2 cut(s)	543, 550
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	5 cut(s)	3, 250, 371, 439, 762
ApeKI	GCWGC	3 cut(s)	66, 119, 661
ApoI	RAATTY	2 cut(s)	205, 575
AsiGI	ACCGGT	1 cut(s)	334
Asp718I	GGTACC	1 cut(s)	410
AspLEI	GCGC	3 cut(s)	173, 380, 425
AspS9I	GGNCC	3 cut(s)	132, 251, 371
AsuC2I	CCSGG	4 cut(s)	366, 438, 697, 795
AsuHPI	GGTGA	3 cut(s)	349, 605, 625
AsuII	TTCGAA	1 cut(s)	579
AvaII	GGWCC	1 cut(s)	132
BalI	TGGCCA	2 cut(s)	5, 764
BanI	GGYRCC	3 cut(s)	170, 410, 797
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BbrPI	CACGTG	2 cut(s)	491, 532
BbsI	GAAGAC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	53, 106, 673
BccI	CCATC	4 cut(s)	21, 161, 321, 584
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	27, 670
BcnI	CCSGG	4 cut(s)	366, 438, 697, 795
BcoDI	GTCTC	1 cut(s)	746
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	2 cut(s)	174, 426
BisI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
BlsI	GCNGC	5 cut(s)	68, 118, 121, 565, 663
Bme1390I	CCNGG	6 cut(s)	27, 366, 438, 670, 697, 795
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	132, 251, 371
BmiI	GGNNCC	4 cut(s)	134, 172, 412, 799
BmrFI	CCNGG	6 cut(s)	27, 366, 438, 670, 697, 795
BmsI	GCATC	2 cut(s)	451, 682
BpiI	GAAGAC	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	404
Bpu14I	TTCGAA	1 cut(s)	579
BpuMI	CCSGG	4 cut(s)	366, 438, 697, 795
BsaAI	YACGTR	2 cut(s)	491, 532
BsaBI	GATNNNNATC	1 cut(s)	594
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	4 cut(s)	364, 669, 696, 765
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 129, 814
Bse118I	RCCGGY	3 cut(s)	334, 388, 602
Bse1I	ACTGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	2 cut(s)	27, 670
BseDI	CCNNGG	4 cut(s)	364, 669, 696, 765
BseGI	GGATG	3 cut(s)	313, 709, 775
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	26, 129, 814
BseMI	GCAATG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	779
BseXI	GCAGC	3 cut(s)	53, 106, 673
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	2 cut(s)	459, 563
BshFI	GGCC	5 cut(s)	5, 252, 373, 441, 764
BshNI	GGYRCC	3 cut(s)	170, 410, 797
BshTI	ACCGGT	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	118, 147
BslI	CCNNNNNNNGG	3 cut(s)	26, 129, 814
BsmAI	GTCTC	1 cut(s)	746
BsmFI	GGGAC	2 cut(s)	118, 147
BsmI	GAATGC	2 cut(s)	416, 524
BsnI	GGCC	5 cut(s)	5, 252, 373, 441, 764
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	535, 542, 595, 809
BspACI	CCGC	4 cut(s)	117, 408, 414, 563
BspANI	GGCC	5 cut(s)	5, 252, 373, 441, 764
BspFNI	CGCG	2 cut(s)	459, 563
BspLI	GGNNCC	4 cut(s)	134, 172, 412, 799
BspPI	GGATC	2 cut(s)	543, 550
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	3 cut(s)	170, 410, 797
BsrDI	GCAATG	1 cut(s)	20
BsrFI	RCCGGY	3 cut(s)	334, 388, 602
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	779
BssAI	RCCGGY	3 cut(s)	334, 388, 602
BssECI	CCNNGG	4 cut(s)	364, 669, 696, 765
BssMI	GATC	4 cut(s)	535, 542, 595, 809
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	27, 670
Bst4CI	ACNGT	2 cut(s)	638, 720
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	171
BstAUI	TGTACA	1 cut(s)	261
BstBAI	YACGTR	2 cut(s)	491, 532
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	289, 604, 654
BstDEI	CTNAG	1 cut(s)	404
BstF5I	GGATG	3 cut(s)	313, 709, 775
BstFNI	CGCG	2 cut(s)	459, 563
BstH2I	RGCGCY	2 cut(s)	174, 426
BstHHI	GCGC	3 cut(s)	173, 380, 425
BstKTI	GATC	4 cut(s)	538, 545, 598, 812
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	4 cut(s)	535, 542, 595, 809
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 494, 658
BstNI	CCWGG	2 cut(s)	27, 670
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	6 cut(s)	25, 364, 436, 668, 695, 793
BstUI	CGCG	2 cut(s)	459, 563
BstV1I	GCAGC	3 cut(s)	53, 106, 673
BstV2I	GAAGAC	1 cut(s)	588
BstXI	CCANNNNNNTGG	1 cut(s)	786
BsuRI	GGCC	5 cut(s)	5, 252, 373, 441, 764
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	313, 709, 775
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	2 cut(s)	684, 716
Cac8I	GCNNGC	3 cut(s)	289, 604, 654
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	3 cut(s)	173, 380, 425
Cfr10I	RCCGGY	3 cut(s)	334, 388, 602
Cfr13I	GGNCC	3 cut(s)	132, 251, 371
Csp6I	GTAC	3 cut(s)	262, 306, 411
CspAI	ACCGGT	1 cut(s)	334
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	3 cut(s)	235, 498, 658
CviQI	GTAC	3 cut(s)	262, 306, 411
DdeI	CTNAG	1 cut(s)	404
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	4 cut(s)	537, 544, 597, 811
DpnII	GATC	4 cut(s)	535, 542, 595, 809
EaeI	YGGCCR	3 cut(s)	3, 439, 762
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	132
Eco72I	CACGTG	2 cut(s)	491, 532
EcoO109I	RGGNCCY	2 cut(s)	251, 371
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	25, 668
EcoT14I	CCWWGG	1 cut(s)	765
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	3 cut(s)	238, 501, 661
FaiI	YATR	7 cut(s)	156, 201, 236, 248, 428, 499, 659
FaqI	GGGAC	2 cut(s)	118, 147
FatI	CATG	3 cut(s)	234, 497, 657
Fnu4HI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
FokI	GGATG	3 cut(s)	300, 696, 782
Fsp4HI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	3 cut(s)	172, 379, 424
GluI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
HaeII	RGCGCY	2 cut(s)	174, 426
HaeIII	GGCC	5 cut(s)	5, 252, 373, 441, 764
HhaI	GCGC	3 cut(s)	173, 380, 425
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	238, 501, 661
Hin6I	GCGC	3 cut(s)	171, 378, 423
HinP1I	GCGC	3 cut(s)	171, 378, 423
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	3 cut(s)	349, 605, 625
Hpy166II	GTNNAC	1 cut(s)	732
Hpy188I	TCNGA	2 cut(s)	385, 748
Hpy188III	TCNNGA	2 cut(s)	164, 510
Hpy8I	GTNNAC	1 cut(s)	732
HpyAV	CCTTC	2 cut(s)	264, 610
HpyCH4III	ACNGT	2 cut(s)	638, 720
HpyCH4IV	ACGT	2 cut(s)	490, 531
HpyCH4V	TGCA	3 cut(s)	475, 661, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 494, 658
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	2 cut(s)	490, 531
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	238, 501, 661
HspAI	GCGC	3 cut(s)	171, 378, 423
KasI	GGCGCC	1 cut(s)	170
KpnI	GGTACC	1 cut(s)	414
KroI	GCCGGC	1 cut(s)	602
KroNI	GCCGGC	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	535, 542, 595, 809
LmnI	GCTCC	3 cut(s)	143, 226, 284
Lsp1109I	GCAGC	3 cut(s)	53, 106, 673
LweI	GCATC	2 cut(s)	451, 682
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	2 cut(s)	490, 531
MaeIII	GTNAC	2 cut(s)	179, 213
MalI	GATC	4 cut(s)	537, 544, 597, 811
MboI	GATC	4 cut(s)	535, 542, 595, 809
MboII	GAAGA	2 cut(s)	222, 593
MlsI	TGGCCA	2 cut(s)	5, 764
MluCI	AATT	6 cut(s)	205, 482, 575, 704, 774, 820
MluNI	TGGCCA	2 cut(s)	5, 764
Mly113I	GGCGCC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	20, 179, 333, 362, 391, 604, 635, 723
Mox20I	TGGCCA	2 cut(s)	5, 764
MroNI	GCCGGC	1 cut(s)	602
MscI	TGGCCA	2 cut(s)	5, 764
MseI	TTAA	6 cut(s)	32, 50, 72, 90, 104, 829
Msp20I	TGGCCA	2 cut(s)	5, 764
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	6 cut(s)	27, 366, 438, 670, 697, 795
Mva1269I	GAATGC	2 cut(s)	416, 524
MvaI	CCWGG	2 cut(s)	27, 670
MvnI	CGCG	2 cut(s)	459, 563
MwoI	GCNNNNNNNGC	3 cut(s)	422, 494, 658
NaeI	GCCGGC	1 cut(s)	604
NarI	GGCGCC	1 cut(s)	171
NciI	CCSGG	4 cut(s)	366, 438, 697, 795
NdeII	GATC	4 cut(s)	535, 542, 595, 809
NgoMIV	GCCGGC	1 cut(s)	602
NlaIII	CATG	3 cut(s)	238, 501, 661
NlaIV	GGNNCC	4 cut(s)	134, 172, 412, 799
NmuCI	GTSAC	2 cut(s)	179, 213
NspI	RCATGY	1 cut(s)	501
NspV	TTCGAA	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	2 cut(s)	528, 642
PctI	GAATGC	2 cut(s)	416, 524
PdiI	GCCGGC	1 cut(s)	604
PfeI	GAWTC	1 cut(s)	478
PflMI	CCANNNNNTGG	2 cut(s)	26, 129
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	68, 118, 121, 565, 663
PluTI	GGCGCC	1 cut(s)	174
PmaCI	CACGTG	2 cut(s)	491, 532
PmlI	CACGTG	2 cut(s)	491, 532
Ppu21I	YACGTR	2 cut(s)	491, 532
Psp6I	CCWGG	2 cut(s)	25, 668
PspCI	CACGTG	2 cut(s)	491, 532
PspGI	CCWGG	2 cut(s)	25, 668
PspN4I	GGNNCC	4 cut(s)	134, 172, 412, 799
PspPI	GGNCC	3 cut(s)	132, 251, 371
PstNI	CAGNNNCTG	1 cut(s)	119
RsaI	GTAC	3 cut(s)	263, 307, 412
RsaNI	GTAC	3 cut(s)	262, 306, 411
SaqAI	TTAA	6 cut(s)	32, 50, 72, 90, 104, 829
SatI	GCNGC	5 cut(s)	67, 117, 120, 564, 662
Sau3AI	GATC	4 cut(s)	535, 542, 595, 809
Sau96I	GGNCC	3 cut(s)	132, 251, 371
ScrFI	CCNGG	6 cut(s)	27, 366, 438, 670, 697, 795
SfaNI	GCATC	2 cut(s)	451, 682
SfoI	GGCGCC	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	1 cut(s)	132
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	6 cut(s)	205, 482, 575, 704, 774, 820
SsiI	CCGC	4 cut(s)	117, 408, 414, 563
SspDI	GGCGCC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	6 cut(s)	25, 364, 436, 668, 695, 793
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	2 cut(s)	638, 720
TaiI	ACGT	2 cut(s)	493, 534
TaqI	TCGA	5 cut(s)	94, 399, 579, 632, 722
TasI	AATT	6 cut(s)	205, 482, 575, 704, 774, 820
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	2 cut(s)	119, 566
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	6 cut(s)	32, 50, 72, 90, 104, 829
Tru9I	TTAA	6 cut(s)	32, 50, 72, 90, 104, 829
TscAI	CASTG	2 cut(s)	684, 723
TseFI	GTSAC	2 cut(s)	179, 213
TseI	GCWGC	3 cut(s)	66, 119, 661
Tsp45I	GTSAC	2 cut(s)	179, 213
TspDTI	ATGAA	1 cut(s)	815
TspGWI	ACGGA	2 cut(s)	198, 600
TspRI	CASTG	2 cut(s)	684, 723
Van91I	CCANNNNNTGG	2 cut(s)	26, 129
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	205, 575
XceI	RCATGY	1 cut(s)	501
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.