Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Forward (+)

24892340 .. 24893876

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGTGCAATCAAAATCACCAACGTCGCTGTATTGCATAATCCTGCTCCTTTTGTTAGCCCTTTTCAGTTCGAGATTTCTTACGAGTGTTTGAATTCTCTCAAAGACGATTTGGAATGGAAGCTTATCTATGTAGGCTCAGCAGAAGATGAGACTTATGATCAACTTCTAGAGAGTGTGCTTGTAGGGCCTGTTAATGTTGGCAACTACCGCTTTGTATTTCAGGCTGATCCTCCGGATCCATCAAAGATTCAGGAGGAAGACATCATCGGTGTTACTGTGCTATTGTTGACATGTTCTTACATGGGTCAAGAGTTCTTGAGAGTTGGATATTACGTGAACAATGATTATGAGGATGAGCAACTCAAGGAAGAGCCTCCAACTAAGGTTTTGATTGATAAAGTTCAGAGGAACATACTTTCCGACAAACCTAGAGTTACTAAATTTCCTATAGATTTTCATCCAGAAGAAGAGCAGACTGCTGCTACTGCCGCTCCTCCTGAACAATCTGATGAACAACAACCTAATGTCAATGGTGAAGCTCAGGTTTTACCTGATCAGTCAGTAGAACCAAAACCTGAGGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0030874 GO:0030875 GO:0031567 GO:0031974 GO:0031981 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

196

Amino Acids

22.13

Weight (kDa)

4.2

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	1 - 154	1.6e-72	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	494
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	2 cut(s)	211, 492
AclWI	GGATC	3 cut(s)	224, 233, 246
AcsI	RAATTY	2 cut(s)	94, 443
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	94
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
AluBI	AGCT	2 cut(s)	124, 542
AluI	AGCT	2 cut(s)	124, 542
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	3 cut(s)	224, 233, 246
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	2 cut(s)	94, 443
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	10, 548
AxyI	CCTNAGG	1 cut(s)	579
BamHI	GGATCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	250
BclI	TGATCA	2 cut(s)	160, 556
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	2 cut(s)	170, 432
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	2 cut(s)	483, 492
BlpI	GCTNAGC	1 cut(s)	139
BlsI	GCNGC	2 cut(s)	484, 493
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	543
Bpu1102I	GCTNAGC	1 cut(s)	139
BpuEI	CTTGAG	2 cut(s)	340, 350
BsaAI	YACGTR	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bse21I	CCTNAGG	1 cut(s)	579
Bse8I	GATNNNNATC	1 cut(s)	459
BseAI	TCCGGA	1 cut(s)	235
BseGI	GGATG	2 cut(s)	361, 460
BseJI	GATNNNNATC	1 cut(s)	459
BseMII	CTCAG	3 cut(s)	153, 557, 570
BseRI	GAGGAG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	469
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	4 cut(s)	160, 229, 238, 556
Bsp1720I	GCTNAGC	1 cut(s)	139
BspACI	CCGC	2 cut(s)	211, 492
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	3 cut(s)	152, 556, 571
BspEI	TCCGGA	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	587
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	3 cut(s)	224, 233, 246
BspQI	GCTCTTC	2 cut(s)	366, 465
BsrBI	CCGCTC	1 cut(s)	494
BssMI	GATC	4 cut(s)	160, 229, 238, 556
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	366, 465
BstBAI	YACGTR	1 cut(s)	337
BstDEI	CTNAG	4 cut(s)	139, 384, 543, 579
BstF5I	GGATG	2 cut(s)	361, 460
BstKTI	GATC	4 cut(s)	163, 232, 241, 559
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	160, 229, 238, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 210, 488, 491
BstNSI	RCATGY	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	469
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	361, 460
CciI	TCATGA	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	188
CviAII	CATG	3 cut(s)	294, 304, 588
CviJI	RGCY	7 cut(s)	60, 124, 138, 190, 227, 376, 542
CviKI_1	RGCY	7 cut(s)	60, 124, 138, 190, 227, 376, 542
DdeI	CTNAG	4 cut(s)	139, 384, 543, 579
DpnI	GATC	4 cut(s)	162, 231, 240, 558
DpnII	GATC	4 cut(s)	160, 229, 238, 556
Eam1104I	CTCTTC	2 cut(s)	366, 465
EarI	CTCTTC	2 cut(s)	366, 465
Eco81I	CCTNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	94
FaeI	CATG	3 cut(s)	297, 307, 591
FaiI	YATR	9 cut(s)	39, 132, 159, 295, 305, 351, 416, 452, 589
FatI	CATG	3 cut(s)	293, 303, 587
FbaI	TGATCA	2 cut(s)	160, 556
Fnu4HI	GCNGC	2 cut(s)	483, 492
FokI	GGATG	2 cut(s)	368, 447
Fsp4HI	GCNGC	2 cut(s)	483, 492
FspBI	CTAG	2 cut(s)	170, 432
GluI	GCNGC	2 cut(s)	483, 492
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	3 cut(s)	297, 307, 591
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	2 cut(s)	250, 584
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	10, 548
Hpy166II	GTNNAC	2 cut(s)	291, 340
Hpy188I	TCNGA	3 cut(s)	408, 424, 511
Hpy188III	TCNNGA	9 cut(s)	73, 170, 236, 254, 311, 319, 464, 500, 588
Hpy8I	GTNNAC	2 cut(s)	291, 340
Hpy99I	CGWCG	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	24, 336
HpyCH4V	TGCA	2 cut(s)	8, 37
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 210, 488, 491
HpyF3I	CTNAG	4 cut(s)	139, 384, 543, 579
HpySE526I	ACGT	2 cut(s)	24, 336
Hsp92II	CATG	3 cut(s)	297, 307, 591
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	2 cut(s)	160, 556
Kzo9I	GATC	4 cut(s)	160, 229, 238, 556
LguI	GCTCTTC	2 cut(s)	366, 465
LmnI	GCTCC	2 cut(s)	52, 499
LpnPI	CCDG	9 cut(s)	57, 204, 209, 239, 249, 477, 513, 530, 567
Lsp1109I	GCAGC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	170, 432
MaeII	ACGT	2 cut(s)	24, 336
MaeIII	GTNAC	2 cut(s)	274, 436
MalI	GATC	4 cut(s)	162, 231, 240, 558
MbiI	CCGCTC	1 cut(s)	494
MboI	GATC	4 cut(s)	160, 229, 238, 556
MboII	GAAGA	5 cut(s)	158, 272, 383, 479, 482
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	2 cut(s)	94, 443
MmeI	TCCRAC	3 cut(s)	307, 404, 447
MnlI	CCTC	7 cut(s)	243, 250, 346, 387, 402, 507, 574
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	4 cut(s)	187, 210, 488, 491
NdeII	GATC	4 cut(s)	160, 229, 238, 556
NlaIII	CATG	3 cut(s)	297, 307, 591
NlaIV	GGNNCC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	297
PagI	TCATGA	1 cut(s)	587
PciI	ACATGT	1 cut(s)	293
PciSI	GCTCTTC	2 cut(s)	366, 465
PfeI	GAWTC	2 cut(s)	250, 584
PkrI	GCNGC	2 cut(s)	484, 493
Ppu21I	YACGTR	1 cut(s)	337
PscI	ACATGT	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	238
SapI	GCTCTTC	2 cut(s)	366, 465
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	483, 492
Sau3AI	GATC	4 cut(s)	160, 229, 238, 556
Sau96I	GGNCC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	319, 365
SmoI	CTYRAG	2 cut(s)	319, 365
Sse9I	AATT	2 cut(s)	94, 443
SsiI	CCGC	2 cut(s)	211, 492
SspMI	CTAG	2 cut(s)	170, 432
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	27, 339
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	94, 443
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	250, 584
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	449, 528
XapI	RAATTY	2 cut(s)	94, 443
XbaI	TCTAGA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	297
XspI	CTAG	2 cut(s)	170, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.