Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Forward (+)

29001488 .. 29003079

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTGTTAGTAACGACCTCTATGACTTCTTACAGATATAATGCTAGAGACTTGGAATTGAAGCTCATATATGTTGGATCTGCTGAAGATGAGACCTATGACGAACTTTTGGAGAGTGTGCTTGTTGGTCCTGTCAATGTTGGCAACTACCGTTTTGTATTGCAGGCTGACCCTCCAGACCCGTCAAAAATACGTGATGAAGATATCATTGGTGTCACAGTACTGTTGTTGACATGTTCATATATGGGCCAGGAGTTTGTTAGGGTGGGATACTATGTGAACAATGATTATGATGATGAAAAACTGAGAGAGGAACCTTCCCCTAAGTTGTTGATTGATAGGGTCCAGAGAAGCATTTTAGCTGACAAGCCGCGAGTCACAAAATTCCCAATAAATTTTCATCCTGAGAACAATGAACATGAGGAGCCACTCCCTTCTTCACTTGATGATGCAATAGAACCAAAGAAGCCCCTATCTTCGCCTGAATTGTGGAGTTTCATATATTTGTACATTTGTGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

174

Amino Acids

20.05

Weight (kDa)

4.48

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	16 - 134	2.4e-52	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	373
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	383, 394
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	222, 509
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	249
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	2 cut(s)	64, 362
AluI	AGCT	2 cut(s)	64, 362
Alw26I	GTCTC	2 cut(s)	42, 86
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	247
ApoI	RAATTY	2 cut(s)	383, 394
AspS9I	GGNCC	3 cut(s)	128, 247, 343
AvaII	GGWCC	2 cut(s)	128, 343
BciT130I	CCWGG	1 cut(s)	251
BciVI	GTATCC	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	42, 86
BfaI	CTAG	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	2 cut(s)	128, 343
BmgT120I	GGNCC	3 cut(s)	128, 247, 343
BmiI	GGNNCC	3 cut(s)	315, 344, 426
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	296, 396
BseRI	GAGGAG	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	373
BshFI	GGCC	1 cut(s)	249
BsmAI	GTCTC	2 cut(s)	42, 86
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	86
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	297, 397
BspFNI	CGCG	1 cut(s)	373
BspLI	GGNNCC	3 cut(s)	315, 344, 426
BspPI	GGATC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	507
BssMI	GATC	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	3 cut(s)	152, 220, 225
BstAUI	TGTACA	1 cut(s)	507
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	305, 324, 405
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	373
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	2 cut(s)	42, 86
BstMBI	GATC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	249
BstUI	CGCG	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	3 cut(s)	128, 247, 343
Csp6I	GTAC	2 cut(s)	221, 508
CviAII	CATG	2 cut(s)	234, 419
CviJI	RGCY	7 cut(s)	64, 167, 249, 362, 370, 427, 469
CviKI_1	RGCY	7 cut(s)	64, 167, 249, 362, 370, 427, 469
CviQI	GTAC	2 cut(s)	221, 508
DdeI	CTNAG	3 cut(s)	305, 324, 405
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	128, 343
Eco57I	CTGAAG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	249
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	2 cut(s)	237, 422
FatI	CATG	2 cut(s)	233, 418
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	237, 422
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	375
Hpy166II	GTNNAC	2 cut(s)	231, 280
Hpy188III	TCNNGA	3 cut(s)	176, 346, 404
Hpy8I	GTNNAC	2 cut(s)	231, 280
HpyAV	CCTTC	2 cut(s)	327, 444
HpyCH4III	ACNGT	3 cut(s)	152, 220, 225
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	163, 452
HpyF3I	CTNAG	3 cut(s)	305, 324, 405
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	237, 422
Kzo9I	GATC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	8 cut(s)	144, 149, 189, 236, 263, 359, 417, 495
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	3 cut(s)	10, 214, 376
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MboII	GAAGA	4 cut(s)	98, 212, 429, 468
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	4 cut(s)	56, 383, 394, 485
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	4 cut(s)	28, 183, 304, 415
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	373
NdeII	GATC	1 cut(s)	77
NlaIII	CATG	2 cut(s)	237, 422
NlaIV	GGNNCC	3 cut(s)	315, 344, 426
NmuCI	GTSAC	2 cut(s)	214, 376
NspI	RCATGY	1 cut(s)	237
PciI	ACATGT	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	194
PscI	ACATGT	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	3 cut(s)	315, 344, 426
PspPI	GGNCC	3 cut(s)	128, 247, 343
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	2 cut(s)	222, 509
RsaNI	GTAC	2 cut(s)	221, 508
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	1 cut(s)	77
Sau96I	GGNCC	3 cut(s)	128, 247, 343
ScaI	AGTACT	1 cut(s)	222
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	6 cut(s)	20, 66, 98, 196, 319, 364
SfaNI	GCATC	1 cut(s)	439
SinI	GGWCC	2 cut(s)	128, 343
Sse9I	AATT	4 cut(s)	56, 383, 394, 485
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	152, 220, 225
TaiI	ACGT	1 cut(s)	196
TasI	AATT	4 cut(s)	56, 383, 394, 485
TatI	WGTACW	2 cut(s)	220, 507
TauI	GCSGC	1 cut(s)	373
TseFI	GTSAC	2 cut(s)	214, 376
Tsp45I	GTSAC	2 cut(s)	214, 376
TspDTI	ATGAA	6 cut(s)	213, 228, 312, 389, 429, 487
VpaK11BI	GGWCC	2 cut(s)	128, 343
XapI	RAATTY	2 cut(s)	383, 394
XceI	RCATGY	1 cut(s)	237
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.