Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Reverse (-)

75495762 .. 75498210

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG478100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTAGGTCGCCGGTGTGAGGTGCAAGGTGAGCATGTTGCTGGGACCGGTGGCCGCTGGGATCGGTCGGCGGGATCGGTGTCACCGACGCGGCTGCTGGGATCGGTGGCCGCTGGGTTTGATGGGTTGAGTAGATCGGAATCGATCTGGCCTTTTCAGGTCATGGGCTGTGGGCAGGCGCAGGCTATGCTACAAGCGTGGACGAGGCCGGTCTGGACTGTGCAGACTTGGATATATGTTGGATCTGCTGAAGATGAGACCTATGACCAACTTTTGGAGAGTGTGCTTGTTGGTCCAGTCAATGTTGGCAACTACCGTTTTGTATTTCAGGCTGACCCTCCAGACCCGTCAAAAATACTTGATGAAGATATCATTGGTGTCACAGTACTGCTGTTGACATGTTCATATATGGGCCAGGAGTTTGTTAGGGTGGGAAACTATGTGAACAATGATTATGATGATGAACAACTGAGAGAGGAACCTCCCCCTAAGTTGCTGATTGATAGGGTCCAGAGAAGCATTTTAGCTGACAAGCCGCGAGTCACAAAATTCCCAATAAATTTTCATCCTGAGAACAATGAACATGAGGAGCCACCCCCTTATTCACTTGATGATGCAACAGAACCAAAGCAGCCCCTATCTTCGCTTGAATTGTGGAGTTTCATATATTTGTGCATTTGTGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

229

Amino Acids

25.75

Weight (kDa)

4.52

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	77 - 189	1.2e-48	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccII	CGCG	2 cut(s)	91, 538
AciI	CCGC	5 cut(s)	55, 71, 91, 111, 536
AclWI	GGATC	4 cut(s)	69, 82, 109, 250
AcoI	YGGCCR	2 cut(s)	52, 108
AcsI	RAATTY	2 cut(s)	548, 559
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	19, 274
AflIII	ACRYGT	1 cut(s)	398
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	650
AjnI	CCWGG	1 cut(s)	414
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	4 cut(s)	69, 82, 109, 250
AoxI	GGCC	5 cut(s)	52, 108, 149, 206, 412
ApeKI	GCWGC	2 cut(s)	94, 631
ApoI	RAATTY	2 cut(s)	548, 559
AsiGI	ACCGGT	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	4 cut(s)	45, 293, 412, 508
AsuHPI	GGTGA	2 cut(s)	41, 75
AvaII	GGWCC	3 cut(s)	45, 293, 508
BbvI	GCAGC	2 cut(s)	81, 643
BccI	CCATC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	251
BisI	GCNGC	6 cut(s)	55, 92, 95, 111, 536, 632
BlsI	GCNGC	6 cut(s)	56, 93, 96, 112, 537, 633
BmcAI	AGTACT	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	3 cut(s)	45, 293, 508
BmgT120I	GGNCC	4 cut(s)	45, 293, 412, 508
BmiI	GGNNCC	4 cut(s)	46, 480, 509, 591
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	324
Bsa29I	ATCGAT	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 274
Bse118I	RCCGGY	3 cut(s)	12, 47, 208
Bse1I	ACTGG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	416
BseCI	ATCGAT	1 cut(s)	143
BseGI	GGATG	1 cut(s)	565
BseJI	GATNNNNATC	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	19, 274
BseMII	CTCAG	2 cut(s)	461, 561
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	2 cut(s)	81, 643
BseYI	CCCAGC	4 cut(s)	41, 57, 97, 113
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	91, 538
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	5 cut(s)	54, 110, 151, 208, 414
BshTI	ACCGGT	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	13, 48, 209
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	19, 274
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	5 cut(s)	54, 110, 151, 208, 414
Bso31I	GGTCTC	1 cut(s)	251
Bsp143I	GATC	6 cut(s)	61, 74, 101, 134, 144, 242
BspACI	CCGC	5 cut(s)	55, 71, 91, 111, 536
BspANI	GGCC	5 cut(s)	54, 110, 151, 208, 414
BspCNI	CTCAG	2 cut(s)	462, 562
BspDI	ATCGAT	1 cut(s)	143
BspFNI	CGCG	2 cut(s)	91, 538
BspLI	GGNNCC	4 cut(s)	46, 480, 509, 591
BspPI	GGATC	4 cut(s)	69, 82, 109, 250
BspTNI	GGTCTC	1 cut(s)	251
BsrFI	RCCGGY	3 cut(s)	12, 47, 208
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	3 cut(s)	12, 47, 208
BssMI	GATC	6 cut(s)	61, 74, 101, 134, 144, 242
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	3 cut(s)	220, 317, 385
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	177, 183
BstDEI	CTNAG	3 cut(s)	470, 489, 570
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	2 cut(s)	91, 538
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	6 cut(s)	64, 77, 104, 137, 147, 245
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	6 cut(s)	61, 74, 101, 134, 144, 242
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 187
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	2 cut(s)	38, 402
BstSCI	CCNGG	1 cut(s)	414
BstUI	CGCG	2 cut(s)	91, 538
BstV1I	GCAGC	2 cut(s)	81, 643
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	143
BsuRI	GGCC	5 cut(s)	54, 110, 151, 208, 414
BsuTUI	ATCGAT	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	177, 183
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	3 cut(s)	12, 47, 208
Cfr13I	GGNCC	4 cut(s)	45, 293, 412, 508
ClaI	ATCGAT	1 cut(s)	143
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	386
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	4 cut(s)	35, 163, 399, 584
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	3 cut(s)	470, 489, 570
DpnI	GATC	6 cut(s)	63, 76, 103, 136, 146, 244
DpnII	GATC	6 cut(s)	61, 74, 101, 134, 144, 242
EaeI	YGGCCR	2 cut(s)	52, 108
Eco31I	GGTCTC	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	3 cut(s)	45, 293, 508
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	370
FaeI	CATG	4 cut(s)	38, 166, 402, 587
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	4 cut(s)	34, 162, 398, 583
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	6 cut(s)	55, 92, 95, 111, 536, 632
FokI	GGATG	1 cut(s)	552
Fsp4HI	GCNGC	6 cut(s)	55, 92, 95, 111, 536, 632
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	6 cut(s)	55, 92, 95, 111, 536, 632
GsaI	CCCAGC	4 cut(s)	45, 61, 101, 117
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	5 cut(s)	54, 110, 151, 208, 414
HapII	CCGG	3 cut(s)	13, 48, 209
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	4 cut(s)	38, 166, 402, 587
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	2 cut(s)	140, 540
HpaII	CCGG	3 cut(s)	13, 48, 209
HphI	GGTGA	2 cut(s)	41, 75
Hpy166II	GTNNAC	3 cut(s)	201, 396, 445
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	4 cut(s)	214, 341, 511, 569
Hpy8I	GTNNAC	3 cut(s)	201, 396, 445
Hpy99I	CGWCG	1 cut(s)	91
HpyCH4III	ACNGT	3 cut(s)	220, 317, 385
HpyCH4V	TGCA	4 cut(s)	25, 223, 617, 675
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 187
HpyF3I	CTNAG	3 cut(s)	470, 489, 570
Hsp92II	CATG	4 cut(s)	38, 166, 402, 587
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	6 cut(s)	61, 74, 101, 134, 144, 242
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	2 cut(s)	81, 643
LweI	GCATC	1 cut(s)	604
MaeIII	GTNAC	3 cut(s)	81, 379, 541
MalI	GATC	6 cut(s)	63, 76, 103, 136, 146, 244
MboI	GATC	6 cut(s)	61, 74, 101, 134, 144, 242
MboII	GAAGA	3 cut(s)	263, 377, 633
MflI	RGATCY	1 cut(s)	242
MluCI	AATT	3 cut(s)	548, 559, 650
MlyI	GAGTC	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	13, 198, 348, 469, 492, 580
MspA1I	CMGCKG	2 cut(s)	57, 113
MspI	CCGG	3 cut(s)	13, 48, 209
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	2 cut(s)	91, 538
MwoI	GCNNNNNNNGC	2 cut(s)	31, 187
NdeII	GATC	6 cut(s)	61, 74, 101, 134, 144, 242
NlaIII	CATG	4 cut(s)	38, 166, 402, 587
NlaIV	GGNNCC	4 cut(s)	46, 480, 509, 591
NmuCI	GTSAC	3 cut(s)	81, 379, 541
NspI	RCATGY	2 cut(s)	38, 402
PciI	ACATGT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	274
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	6 cut(s)	56, 93, 96, 112, 537, 633
PleI	GAGTC	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	548
PscI	ACATGT	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	4 cut(s)	41, 57, 97, 113
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	4 cut(s)	46, 480, 509, 591
PspPI	GGNCC	4 cut(s)	45, 293, 412, 508
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
SatI	GCNGC	6 cut(s)	55, 92, 95, 111, 536, 632
Sau3AI	GATC	6 cut(s)	61, 74, 101, 134, 144, 242
Sau96I	GGNCC	4 cut(s)	45, 293, 412, 508
ScaI	AGTACT	1 cut(s)	387
SchI	GAGTC	1 cut(s)	549
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	7 cut(s)	10, 24, 31, 162, 263, 484, 529
SfaNI	GCATC	1 cut(s)	604
SgrAI	CRCCGGYG	1 cut(s)	12
SinI	GGWCC	3 cut(s)	45, 293, 508
Sse9I	AATT	3 cut(s)	548, 559, 650
SsiI	CCGC	5 cut(s)	55, 71, 91, 111, 536
StyD4I	CCNGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	220, 317, 385
TaqI	TCGA	1 cut(s)	143
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	548, 559, 650
TatI	WGTACW	1 cut(s)	385
TauI	GCSGC	4 cut(s)	57, 94, 113, 538
TfiI	GAWTC	1 cut(s)	140
TseFI	GTSAC	3 cut(s)	81, 379, 541
TseI	GCWGC	2 cut(s)	94, 631
Tsp45I	GTSAC	3 cut(s)	81, 379, 541
TspDTI	ATGAA	6 cut(s)	378, 393, 477, 554, 594, 652
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	3 cut(s)	45, 293, 508
XapI	RAATTY	2 cut(s)	548, 559
XceI	RCATGY	2 cut(s)	38, 402
ZrmI	AGTACT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.