Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Reverse (-)

67819495 .. 67821729

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG486100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCGCTGGACTTGGATATATGTTGGATCTACTGAAGATGAGACCTATGACCAACTTTTGGAGAGTGTGCTTGTTGGTCCTGTCAATGTTGGCAACTACCGTTTTGTATTTCAGGCTGACCCTCCAGACCCGTCAAAAATACTTGATGAAGATATCATTGGTGTCACAGTACTGCTGTTGACATGTTCATATATGGGCCAGGAGTTTGTTAGGGTGGGAAACTATGTGAACAATGATTATGATGATGAACAACTGAGAGAGGAACCTCCCCCTAAGTTGCTGATTGATAAGGTCCAGAGAAGCATTTTAGCTGACAAGCCGCGAGTCACAAAATTCCCAATAAATTTTCATCCTGAGAACAATGAACATGAGGAGCCACCCCCTTATTCACTTGATGATGCAACAGAACCAAAGCAGCCCCTATCTTCGCTTGAATTGTGGAGTTTCATATATTTGTGCATTTGTGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

157

Amino Acids

18.18

Weight (kDa)

4.27

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	2 - 117	3.4e-50	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccII	CGCG	1 cut(s)	322
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	332, 343
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	2 cut(s)	332, 343
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	3 cut(s)	77, 196, 292
AvaII	GGWCC	2 cut(s)	77, 292
BbvI	GCAGC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	35
BisI	GCNGC	2 cut(s)	320, 416
BlsI	GCNGC	2 cut(s)	321, 417
BmcAI	AGTACT	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	2 cut(s)	77, 292
BmgT120I	GGNCC	3 cut(s)	77, 196, 292
BmiI	GGNNCC	2 cut(s)	264, 375
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	388
BpmI	CTGGAG	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	245, 345
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	246, 346
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	264, 375
BspPI	GGATC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	35
BssMI	GATC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	101, 169
BstDEI	CTNAG	3 cut(s)	254, 273, 354
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	3 cut(s)	77, 196, 292
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	2 cut(s)	183, 368
CviJI	RGCY	6 cut(s)	116, 198, 311, 319, 376, 418
CviKI_1	RGCY	6 cut(s)	116, 198, 311, 319, 376, 418
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	3 cut(s)	254, 273, 354
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	77, 292
Eco57I	CTGAAG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	154
FaeI	CATG	2 cut(s)	186, 371
FatI	CATG	2 cut(s)	182, 367
Fnu4HI	GCNGC	2 cut(s)	320, 416
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	320, 416
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	320, 416
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	186, 371
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	324
Hpy166II	GTNNAC	2 cut(s)	180, 229
Hpy188III	TCNNGA	3 cut(s)	125, 295, 353
Hpy8I	GTNNAC	2 cut(s)	180, 229
HpyCH4III	ACNGT	2 cut(s)	101, 169
HpyCH4V	TGCA	2 cut(s)	401, 459
HpyF3I	CTNAG	3 cut(s)	254, 273, 354
Hsp92II	CATG	2 cut(s)	186, 371
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	7 cut(s)	93, 98, 138, 185, 212, 308, 366
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	163, 325
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	3 cut(s)	47, 161, 417
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	3 cut(s)	332, 343, 434
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	4 cut(s)	132, 253, 276, 364
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	322
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	186, 371
NlaIV	GGNNCC	2 cut(s)	264, 375
NmuCI	GTSAC	2 cut(s)	163, 325
NspI	RCATGY	1 cut(s)	186
PciI	ACATGT	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	321, 417
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PscI	ACATGT	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	264, 375
PspPI	GGNCC	3 cut(s)	77, 196, 292
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SatI	GCNGC	2 cut(s)	320, 416
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	3 cut(s)	77, 196, 292
ScaI	AGTACT	1 cut(s)	171
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	4 cut(s)	47, 268, 294, 313
SfaNI	GCATC	1 cut(s)	388
SinI	GGWCC	2 cut(s)	77, 292
Sse9I	AATT	3 cut(s)	332, 343, 434
SsiI	CCGC	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	101, 169
TasI	AATT	3 cut(s)	332, 343, 434
TatI	WGTACW	1 cut(s)	169
TauI	GCSGC	1 cut(s)	322
TseFI	GTSAC	2 cut(s)	163, 325
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	2 cut(s)	163, 325
TspDTI	ATGAA	6 cut(s)	162, 177, 261, 338, 378, 436
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	77, 292
XapI	RAATTY	2 cut(s)	332, 343
XceI	RCATGY	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.