Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Forward (+)

55440479 .. 55442689

Gene Structure 2211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG331400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGTGCCGTCAACATCACAAACGTCGCCGTTTTGGACAACCCCTCCGCTTTTCTCAACCCGTTCCAGTTCGAAATCTCATACGAGTGCTTGGCTTCCCTCAAAGACGACTTGGAATGGAAGCTCATATATGTCGGATCTGCTGAAGATGAGACGTATGACCAACTTTTGGAGAGTGTGCTTGTTGGTCCTGTCAATGTTGGCAACTACCGTTTTGTATTTCAGGCTGATCCTCCAGACCCGTCAAAAATACGTGATGAAGATATCATTGGTGTCACAGTACTGCTGTTGACATGTTCATATATGGGGCAGGAGTTTGTTAGGGTGGGATACTATGTGAACAATGATTATGATGATGAACAACTGAGAGAGGAACCTCCCCCTAAGTTGCTGATTGATAGGGTCCAGAGAAACATTTTAGCTGACAAGCCGCGAGTCACAAAATTCCCAATAAATTTTCATCCTGAGAACAATGAACACGAGGAGCCACCCCCTTCTTCACTTGATGACGCAACAGAACCAAAGCAACCCCTATCTTCGCCTGATTTAGCAACTGAGTCGAACATCACAGCAGAAGAACCATCCCTTCCACCTGTATCATCTGTCGGAAGTGCGGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

207

Amino Acids

23.14

Weight (kDa)

4.15

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	1 - 154	1e-72	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccII	CGCG	1 cut(s)	433
AciI	CCGC	3 cut(s)	48, 431, 614
AclWI	GGATC	2 cut(s)	145, 224
AcsI	RAATTY	2 cut(s)	443, 454
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	293
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	2 cut(s)	124, 422
AluI	AGCT	2 cut(s)	124, 422
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	145, 224
ApoI	RAATTY	2 cut(s)	443, 454
AspS9I	GGNCC	2 cut(s)	188, 403
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	188, 403
BauI	CACGAG	1 cut(s)	479
BccI	CCATC	1 cut(s)	589
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	540, 574
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
BmcAI	AGTACT	1 cut(s)	282
Bme18I	GGWCC	2 cut(s)	188, 403
BmgT120I	GGNCC	2 cut(s)	188, 403
BmiI	GGNNCC	3 cut(s)	375, 404, 486
BpmI	CTGGAG	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	460, 581
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	3 cut(s)	356, 456, 546
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	137, 229
BspACI	CCGC	3 cut(s)	48, 431, 614
BspCNI	CTCAG	3 cut(s)	357, 457, 547
BspFNI	CGCG	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	375, 404, 486
BspPI	GGATC	2 cut(s)	145, 224
BspT104I	TTCGAA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	137, 229
BssSI	CACGAG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	479
Bst4CI	ACNGT	2 cut(s)	212, 280
BstBAI	YACGTR	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	365, 384, 465, 555
BstF5I	GGATG	2 cut(s)	460, 581
BstFNI	CGCG	1 cut(s)	433
BstKTI	GATC	2 cut(s)	140, 232
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	137, 229
BstNSI	RCATGY	1 cut(s)	297
BstUI	CGCG	1 cut(s)	433
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	460, 581
Cfr13I	GGNCC	2 cut(s)	188, 403
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	1 cut(s)	294
CviJI	RGCY	6 cut(s)	95, 124, 227, 422, 430, 487
CviKI_1	RGCY	6 cut(s)	95, 124, 227, 422, 430, 487
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	4 cut(s)	365, 384, 465, 555
DpnI	GATC	2 cut(s)	139, 231
DpnII	GATC	2 cut(s)	137, 229
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	188, 403
Eco57I	CTGAAG	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	1 cut(s)	297
FatI	CATG	1 cut(s)	293
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	2 cut(s)	447, 568
Fsp4HI	GCNGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	431
GsuI	CTGGAG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	518
Hin1II	CATG	1 cut(s)	297
HincII	GTYRAC	2 cut(s)	13, 291
HindII	GTYRAC	2 cut(s)	13, 291
HinfI	GANTC	2 cut(s)	435, 557
Hpy166II	GTNNAC	3 cut(s)	13, 291, 340
Hpy188I	TCNGA	2 cut(s)	137, 608
Hpy188III	TCNNGA	3 cut(s)	236, 406, 464
Hpy8I	GTNNAC	3 cut(s)	13, 291, 340
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	504, 596
HpyCH4III	ACNGT	2 cut(s)	212, 280
HpyCH4IV	ACGT	3 cut(s)	24, 155, 253
HpyF3I	CTNAG	4 cut(s)	365, 384, 465, 555
HpySE526I	ACGT	3 cut(s)	24, 155, 253
Hsp92II	CATG	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	137, 229
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	9 cut(s)	80, 204, 209, 249, 296, 419, 477, 555, 606
MaeII	ACGT	3 cut(s)	24, 155, 253
MaeIII	GTNAC	2 cut(s)	274, 436
MalI	GATC	2 cut(s)	139, 231
MboI	GATC	2 cut(s)	137, 229
MboII	GAAGA	5 cut(s)	158, 272, 489, 528, 587
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	3 cut(s)	443, 454, 619
MlyI	GAGTC	2 cut(s)	444, 566
MmeI	TCCRAC	2 cut(s)	115, 586
MnlI	CCTC	6 cut(s)	55, 110, 243, 364, 387, 475
MseI	TTAA	1 cut(s)	622
MslI	CAYNNNNRTG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	433
NdeII	GATC	2 cut(s)	137, 229
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	3 cut(s)	375, 404, 486
NmuCI	GTSAC	2 cut(s)	274, 436
NspI	RCATGY	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	72
PciI	ACATGT	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	2 cut(s)	443, 565
PpsI	GAGTC	2 cut(s)	443, 565
Ppu21I	YACGTR	1 cut(s)	254
PscI	ACATGT	1 cut(s)	293
PspN4I	GGNNCC	3 cut(s)	375, 404, 486
PspPI	GGNCC	2 cut(s)	188, 403
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	622
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	2 cut(s)	137, 229
Sau96I	GGNCC	2 cut(s)	188, 403
ScaI	AGTACT	1 cut(s)	282
SchI	GAGTC	2 cut(s)	444, 566
SetI	ASST	7 cut(s)	27, 126, 158, 256, 379, 424, 595
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	2 cut(s)	188, 403
SmiMI	CAYNNNNRTG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	443, 454, 619
SsiI	CCGC	3 cut(s)	48, 431, 614
TaaI	ACNGT	2 cut(s)	212, 280
TaiI	ACGT	3 cut(s)	27, 158, 256
TaqI	TCGA	2 cut(s)	72, 560
TasI	AATT	3 cut(s)	443, 454, 619
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	622
Tru9I	TTAA	1 cut(s)	622
TseFI	GTSAC	2 cut(s)	274, 436
Tsp45I	GTSAC	2 cut(s)	274, 436
TspDTI	ATGAA	5 cut(s)	273, 288, 372, 449, 489
Van91I	CCANNNNNTGG	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	188, 403
XapI	RAATTY	2 cut(s)	443, 454
XceI	RCATGY	1 cut(s)	297
ZrmI	AGTACT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.