Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Reverse (-)

67773660 .. 67783979

Gene Structure 10320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G041650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAGGCCCTGAAGCCCGAAGACTTGGAATGGAAGCTCATATATGTTGGATCTGCTGAAGATGAGACTTATGACCAACTTTTGGAGAGTGCGCTTGTTGGTCCTGTCAATGTTGGCAACTACCGTTTTGTATTTCAGGCTGATCCGCTAGACCCGTCAAAAATACATGATGAAGATATCATTGGTGTCACAGTACTGCTGTTGACATGTTCATATATGGGGCAGGAGTTTGTTAGGGTGGGATACTATGTGAACAATGATTATGATGATGAACAACTGAGAGAGGAACCTCCCCCTAAGTTGCTGATTGATAGGGTCCATAGAAGCATTTTGGCTGACAAGCCACGAGTCACAAAATTCCCAATAAATTTTCATCCTGAGAACAATGAACATGAGGAGCCACCCCCTTCTTCACTTGATGATGCAACAGAACCAAAACAGCCCCTATCTTCGCCTGAATTGTGGAGTTTCATATATTTGTGCATTTGTGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

165

Amino Acids

18.98

Weight (kDa)

4.36

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	7 - 125	4.1e-54	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	82
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	2 cut(s)	58, 137
AcsI	RAATTY	2 cut(s)	356, 367
AcuI	CTGAAG	2 cut(s)	32, 78
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	58, 137
AlwNI	CAGNNNCTG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	356, 367
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	3 cut(s)	7, 101, 316
AvaII	GGWCC	2 cut(s)	101, 316
BauI	CACGAG	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	236
BmcAI	AGTACT	1 cut(s)	195
Bme18I	GGWCC	2 cut(s)	101, 316
BmgT120I	GGNCC	3 cut(s)	7, 101, 316
BmiI	GGNNCC	3 cut(s)	288, 317, 399
BmsI	GCATC	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	269, 369
BseRI	GAGGAG	1 cut(s)	410
BshFI	GGCC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	50, 142
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	270, 370
BspLI	GGNNCC	3 cut(s)	288, 317, 399
BspPI	GGATC	2 cut(s)	58, 137
BssMI	GATC	2 cut(s)	50, 142
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	125, 193
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	278, 297, 378
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	53, 145
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	50, 142
BstNSI	RCATGY	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	10
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	7, 101, 316
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	3 cut(s)	167, 207, 392
CviJI	RGCY	8 cut(s)	8, 16, 37, 140, 335, 343, 400, 442
CviKI_1	RGCY	8 cut(s)	8, 16, 37, 140, 335, 343, 400, 442
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	278, 297, 378
DpnI	GATC	2 cut(s)	52, 144
DpnII	GATC	2 cut(s)	50, 142
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	101, 316
Eco57I	CTGAAG	2 cut(s)	32, 78
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	178
FaeI	CATG	3 cut(s)	170, 210, 395
FatI	CATG	3 cut(s)	166, 206, 391
FokI	GGATG	1 cut(s)	360
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	170, 210, 395
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	1 cut(s)	348
Hpy166II	GTNNAC	2 cut(s)	204, 253
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	2 cut(s)	204, 253
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	2 cut(s)	125, 193
HpyCH4V	TGCA	3 cut(s)	4, 425, 483
HpyF3I	CTNAG	3 cut(s)	278, 297, 378
Hsp92II	CATG	3 cut(s)	170, 210, 395
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	50, 142
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	6 cut(s)	23, 117, 122, 209, 390, 468
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	187, 349
MalI	GATC	2 cut(s)	52, 144
MboI	GATC	2 cut(s)	50, 142
MboII	GAAGA	5 cut(s)	32, 71, 185, 402, 441
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	3 cut(s)	356, 367, 458
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	3 cut(s)	277, 300, 388
NdeII	GATC	2 cut(s)	50, 142
NlaIII	CATG	3 cut(s)	170, 210, 395
NlaIV	GGNNCC	3 cut(s)	288, 317, 399
NmuCI	GTSAC	2 cut(s)	187, 349
NspI	RCATGY	1 cut(s)	210
PciI	ACATGT	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PscI	ACATGT	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	288, 317, 399
PspPI	GGNCC	3 cut(s)	7, 101, 316
PstNI	CAGNNNCTG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	50, 142
Sau96I	GGNCC	3 cut(s)	7, 101, 316
ScaI	AGTACT	1 cut(s)	195
SchI	GAGTC	1 cut(s)	357
SetI	ASST	2 cut(s)	39, 292
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	2 cut(s)	101, 316
Sse9I	AATT	3 cut(s)	356, 367, 458
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	125, 193
TasI	AATT	3 cut(s)	356, 367, 458
TatI	WGTACW	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	187, 349
Tsp45I	GTSAC	2 cut(s)	187, 349
TspDTI	ATGAA	6 cut(s)	186, 201, 285, 362, 402, 460
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	101, 316
XapI	RAATTY	2 cut(s)	356, 367
XceI	RCATGY	1 cut(s)	210
XspI	CTAG	1 cut(s)	149
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.