Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Reverse (-)

17799477 .. 17801661

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGCGCCATTAACATCACGAACGTGACGGTGCTTGACAATCCGGCTCTGTTTCTCGCACCCTTCCAGTTTGAAATTTCTTACGAGTGCAACACTCCTCTCAAAGACGATTTGGAATGGAAGCTCATCTACGTGGGATCTGCTGAGGATGAGACTTATGACCAACTCCTGGAGAGTGTACTTGTTGGGCCTGTCAATGTCGGAAACTATCGTTTTGTACTACAGGCAGATCCTCCTGACCCATCCAAGATTCGTGATGAAGACATCATTGGTGTGACAGTGCTTCTGTTGACCTGCTCTTATATTGGTCAGGAATTTATCCGAGTGGGCTACTACGTTAACAATGATTATGATGATGAGCAGCTGCGAGAAGAACCTCCTCCAAAGGTCTTGATTGATAGGGTTCAAAGAAACATTTTGTCTGACAAACCTAGGGTCACAAAGTTCCCCATCAATTTCCAGCCAGAGAATACTGAGAGTGGAGAACAACCCCCTCCACTTGATCAGCCCAATGAAGCGGATGGAAGCACAGAACAGCTTGTTTTGCCTGTAAATCCTTCAGAGGAGCAGAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0030874 GO:0030875 GO:0031567 GO:0031974 GO:0031981 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

193

Amino Acids

21.73

Weight (kDa)

4.11

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	1 - 153	3.8e-71	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	169
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	2 cut(s)	145, 224
AcsI	RAATTY	2 cut(s)	75, 314
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	2 cut(s)	180, 219
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	74, 407
AjnI	CCWGG	1 cut(s)	168
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	124, 364, 538
AluI	AGCT	3 cut(s)	124, 364, 538
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	145, 224
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	361, 364
ApoI	RAATTY	2 cut(s)	75, 314
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
AspA2I	CCTAGG	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	188
AvrII	CCTAGG	1 cut(s)	431
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbsI	GAAGAC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	351, 373
BccI	CCATC	3 cut(s)	250, 458, 515
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	2 cut(s)	362, 365
BlnI	CCTAGG	1 cut(s)	431
BlsI	GCNGC	2 cut(s)	363, 366
Bme1390I	CCNGG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	3 cut(s)	154, 242, 526
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	135, 465
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	3 cut(s)	87, 369, 578
BseXI	GCAGC	2 cut(s)	351, 373
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	137, 229, 502
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	136, 466
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	145, 224
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	137, 229, 502
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	31, 280
BstBAI	YACGTR	1 cut(s)	133
BstDEI	CTNAG	3 cut(s)	144, 474, 576
BstF5I	GGATG	3 cut(s)	154, 242, 526
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	3 cut(s)	140, 232, 505
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	3 cut(s)	137, 229, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	351, 373
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	137, 229
BstYI	RGATCY	2 cut(s)	137, 229
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	154, 242, 526
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	302
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	179, 218
CviJI	RGCY	8 cut(s)	47, 124, 190, 330, 364, 463, 508, 538
CviKI_1	RGCY	8 cut(s)	47, 124, 190, 330, 364, 463, 508, 538
CviQI	GTAC	2 cut(s)	179, 218
DdeI	CTNAG	3 cut(s)	144, 474, 576
DpnI	GATC	3 cut(s)	139, 231, 504
DpnII	GATC	3 cut(s)	137, 229, 502
Eco130I	CCWWGG	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
FaiI	YATR	3 cut(s)	159, 303, 351
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	362, 365
FokI	GGATG	3 cut(s)	161, 229, 533
Fsp4HI	GCNGC	2 cut(s)	362, 365
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	2 cut(s)	362, 365
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	2 cut(s)	291, 340
HindII	GTYRAC	2 cut(s)	291, 340
HinfI	GANTC	1 cut(s)	250
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	3 cut(s)	179, 291, 340
Hpy188I	TCNGA	4 cut(s)	203, 323, 424, 562
Hpy188III	TCNNGA	5 cut(s)	19, 236, 254, 311, 391
Hpy8I	GTNNAC	3 cut(s)	179, 291, 340
HpyAV	CCTTC	2 cut(s)	73, 567
HpyCH4III	ACNGT	2 cut(s)	31, 280
HpyCH4IV	ACGT	3 cut(s)	24, 132, 336
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	3 cut(s)	144, 474, 576
HpySE526I	ACGT	3 cut(s)	24, 132, 336
HspAI	GCGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	502
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	137, 229, 502
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	2 cut(s)	351, 373
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	3 cut(s)	24, 132, 336
MaeIII	GTNAC	3 cut(s)	25, 274, 436
MalI	GATC	3 cut(s)	139, 231, 504
MboI	GATC	3 cut(s)	137, 229, 502
MboII	GAAGA	2 cut(s)	272, 383
MflI	RGATCY	2 cut(s)	137, 229
MluCI	AATT	3 cut(s)	75, 314, 454
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	7 cut(s)	108, 139, 243, 387, 390, 504, 556
MseI	TTAA	2 cut(s)	12, 339
MslI	CAYNNNNRTG	3 cut(s)	23, 131, 272
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	544
NdeII	GATC	3 cut(s)	137, 229, 502
NmuCI	GTSAC	3 cut(s)	25, 274, 436
OliI	CACNNNNGTG	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	363, 366
Ppu21I	YACGTR	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	137, 229
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	2 cut(s)	180, 219
RsaNI	GTAC	2 cut(s)	179, 218
RseI	CAYNNNNRTG	3 cut(s)	23, 131, 272
SaqAI	TTAA	2 cut(s)	12, 339
SatI	GCNGC	2 cut(s)	362, 365
Sau3AI	GATC	3 cut(s)	137, 229, 502
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	3 cut(s)	23, 131, 272
Sse9I	AATT	3 cut(s)	75, 314, 454
SsiI	CCGC	1 cut(s)	518
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	2 cut(s)	31, 280
TaiI	ACGT	3 cut(s)	27, 135, 339
TasI	AATT	3 cut(s)	75, 314, 454
TatI	WGTACW	2 cut(s)	178, 217
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	12, 339
Tru9I	TTAA	2 cut(s)	12, 339
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	3 cut(s)	25, 274, 436
TseI	GCWGC	2 cut(s)	361, 364
Tsp45I	GTSAC	3 cut(s)	25, 274, 436
TspDTI	ATGAA	2 cut(s)	273, 528
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	2 cut(s)	75, 314
XmaJI	CCTAGG	1 cut(s)	431
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.