Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Reverse (-)

16408716 .. 16411461

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G150200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAGCGCGGTGAACATCACCAACGTCGCTGTGCTTGACAATCCGGCTTTGTTTCTCGCACCTTTCCAGTTCGAGATTTCTTATGAGTGCTTGACCCCTCTCAAAGACGATTTGGAATGGAAGCTCATCTATGTGGGATCTGCTGAGGATGAGACTTATGACCAACTATTGGAGAGTGTACTTGTTGGGCCTGTCAATGTTGGAAACTATCGTTTTGTACTACAGGCAGATCCTCCTGACCCATCCAAGATTCGTGATGAAGACATTATTGGAGTGACAGTGCTTTTGTTGACCTGCTCTTATCTTGGTCAGGAATTTATCCGAGTGGGCTACTATGTTAACAATGATTATGATGATGAACAGCTGCGAGAAGAACCTCCTCCAAAGGTCTTAATTGATAGGGTTCAAAGAAACATTTTGTCTGATAAACCCAGGGTCACAAAGTTCCCCATCAATTTCCACCCAGAGAATACTGAGAATGGAGAACAACCGGCACCTGATCAGCCTAACGAGGCAGATGGAAGTGGAGACTTGCTTGTTGCGCCTGTAAACCCTTCAGAGGAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0030874 GO:0030875 GO:0031567 GO:0031974 GO:0031981 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

190

Amino Acids

21.24

Weight (kDa)

4.1

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	493
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	145, 224
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	2 cut(s)	180, 219
AfiI	CCNNNNNNNGG	2 cut(s)	169, 559
AgsI	TTSAA	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	2 cut(s)	124, 364
AluI	AGCT	2 cut(s)	124, 364
Alw26I	GTCTC	2 cut(s)	146, 522
AlwI	GGATC	2 cut(s)	145, 224
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	268, 300
AspLEI	GCGC	2 cut(s)	8, 544
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	10, 22
BanI	GGYRCC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	3 cut(s)	250, 458, 512
BciT130I	CCWGG	1 cut(s)	433
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	146, 522
BfmI	CTRYAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	431, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 559
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	2 cut(s)	431, 432
BseGI	GGATG	2 cut(s)	154, 242
BseLI	CCNNNNNNNGG	2 cut(s)	169, 559
BseMII	CTCAG	2 cut(s)	135, 465
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	44, 491
BslI	CCNNNNNNNGG	2 cut(s)	169, 559
BsmAI	GTCTC	2 cut(s)	146, 522
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	137, 229, 499
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	136, 466
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	495
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	145, 224
BspT107I	GGYRCC	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	431, 432
BssMI	GATC	3 cut(s)	137, 229, 499
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	144, 474
BstF5I	GGATG	2 cut(s)	154, 242
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	8, 544
BstKTI	GATC	3 cut(s)	140, 232, 502
BstMAI	GTCTC	2 cut(s)	146, 522
BstMBI	GATC	3 cut(s)	137, 229, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstNI	CCWGG	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	137, 229
BstYI	RGATCY	2 cut(s)	137, 229
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	154, 242
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	302
CfoI	GCGC	2 cut(s)	8, 544
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	179, 218
CviJI	RGCY	6 cut(s)	47, 124, 190, 330, 364, 505
CviKI_1	RGCY	6 cut(s)	47, 124, 190, 330, 364, 505
CviQI	GTAC	2 cut(s)	179, 218
DdeI	CTNAG	2 cut(s)	144, 474
DpnI	GATC	3 cut(s)	139, 231, 501
DpnII	GATC	3 cut(s)	137, 229, 499
Eco57I	CTGAAG	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	431
FaiI	YATR	5 cut(s)	84, 132, 159, 336, 351
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	2 cut(s)	161, 229
Fsp4HI	GCNGC	1 cut(s)	365
GlaI	GCGC	2 cut(s)	7, 543
GluI	GCNGC	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	44, 491
HhaI	GCGC	2 cut(s)	8, 544
Hin6I	GCGC	2 cut(s)	6, 542
HinP1I	GCGC	2 cut(s)	6, 542
HincII	GTYRAC	2 cut(s)	291, 340
HindII	GTYRAC	2 cut(s)	291, 340
HinfI	GANTC	1 cut(s)	250
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	44, 491
HphI	GGTGA	2 cut(s)	10, 22
Hpy166II	GTNNAC	5 cut(s)	13, 179, 291, 340, 550
Hpy188I	TCNGA	3 cut(s)	323, 424, 559
Hpy188III	TCNNGA	4 cut(s)	73, 236, 254, 311
Hpy8I	GTNNAC	5 cut(s)	13, 179, 291, 340, 550
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpyF3I	CTNAG	2 cut(s)	144, 474
HpySE526I	ACGT	1 cut(s)	24
HspAI	GCGC	2 cut(s)	6, 542
Ksp22I	TGATCA	1 cut(s)	499
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	137, 229, 499
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	1 cut(s)	351
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	274, 436
MalI	GATC	3 cut(s)	139, 231, 501
MboI	GATC	3 cut(s)	137, 229, 499
MboII	GAAGA	2 cut(s)	272, 383
MflI	RGATCY	2 cut(s)	137, 229
MluCI	AATT	3 cut(s)	314, 393, 454
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	7 cut(s)	108, 139, 243, 387, 390, 505, 553
MseI	TTAA	2 cut(s)	339, 392
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	2 cut(s)	44, 491
MspR9I	CCNGG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	433
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	541
NdeII	GATC	3 cut(s)	137, 229, 499
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	2 cut(s)	274, 436
PasI	CCCWGGG	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	137, 229
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	2 cut(s)	180, 219
RsaNI	GTAC	2 cut(s)	179, 218
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	339, 392
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	3 cut(s)	137, 229, 499
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	433
SetI	ASST	8 cut(s)	27, 64, 126, 296, 366, 379, 390, 499
SfcI	CTRYAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	314, 393, 454
SsiI	CCGC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	314, 393, 454
TatI	WGTACW	2 cut(s)	178, 217
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	339, 392
Tru9I	TTAA	2 cut(s)	339, 392
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	2 cut(s)	274, 436
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	2 cut(s)	274, 436
TspDTI	ATGAA	2 cut(s)	273, 372
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.