Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Reverse (-)

23634888 .. 23636997

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGCGCCATTAACATCACGAACGTGACGGTGCTCGACAATCCGGCTCTGTTTCTGGCACCCTTCCAGTTCGAAATTTCTTACGAGTGCAACACTCCTCTCAAAGACGGTGAACTAAAAGTGGATGGATGCCTTGTTTACTTGTTGAATAATTTTTATGCCAATACAGATTTGGAATGGAAGCTCATCTACGTGGGATCTGCTGAGGATGAGACTTATGACCAACTACTGGAGAGTAAGCTTCCACTAGATCCTTCTACCGTATTCTTTTCACATCTGACCCACAAGGTGCATTTGAATTTGAATCAACTCCAGTTAATTTTGTTGGTCATTTTGCAGGCAGATCCTCCTGACCCATCCAAGATTCGTGATGAAGACATCATTGGTGTGACAGTGCTTCTGTTGACCTGCTCTTATATTGGTCAGGAATTTATCCGAGTGGGCTACTATGTTAACAATGATTATGATGATGAGCAGCTGCGAGAAGAACCTCCTTCAAAGGTCTTGATTGATAGGGTTCAAAGAAACATTTTGTCTGATAAGCCCAGGGTCACAAAGTTCCCCATCAATTTCCAGCCAGAGAATACTGAGAGTGGAGAACAACCCTCTCCACTTGATCAGCCTGATCAGGCGGATGGAAGCGGAGAACAGCTAGTTTTGCCTGTAGATCCTCCAGAGGAGCAGAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0030874 GO:0030875 GO:0031567 GO:0031974 GO:0031981 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

231

Amino Acids

26.06

Weight (kDa)

4.24

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	58
AccB7I	CCANNNNNTGG	1 cut(s)	229
AciI	CCGC	2 cut(s)	632, 642
AclWI	GGATC	4 cut(s)	205, 245, 338, 662
AcsI	RAATTY	3 cut(s)	75, 298, 428
AdeI	CACNNNGTG	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	148, 298, 304, 498, 521
AjnI	CCWGG	1 cut(s)	545
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	4 cut(s)	184, 241, 478, 652
AluI	AGCT	4 cut(s)	184, 241, 478, 652
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	4 cut(s)	205, 245, 338, 662
ApeKI	GCWGC	2 cut(s)	475, 478
ApoI	RAATTY	3 cut(s)	75, 298, 428
AspLEI	GCGC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	465, 487
BccI	CCATC	4 cut(s)	119, 364, 572, 629
BciT130I	CCWGG	1 cut(s)	547
BclI	TGATCA	2 cut(s)	616, 625
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	248, 653
BfmI	CTRYAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	2 cut(s)	476, 479
BlsI	GCNGC	2 cut(s)	477, 480
Bme1390I	CCNGG	1 cut(s)	547
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	3 cut(s)	251, 296, 657
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	545, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	3 cut(s)	67, 234, 313
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	2 cut(s)	545, 546
BseGI	GGATG	5 cut(s)	130, 134, 214, 356, 640
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	195, 579
BseNI	ACTGG	3 cut(s)	67, 234, 313
BseRI	GAGGAG	2 cut(s)	87, 692
BseXI	GCAGC	2 cut(s)	465, 487
BshNI	GGYRCC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	6 cut(s)	197, 250, 343, 616, 625, 667
BspACI	CCGC	2 cut(s)	632, 642
BspCNI	CTCAG	2 cut(s)	196, 580
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	4 cut(s)	205, 245, 338, 662
BspT104I	TTCGAA	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	67, 234, 313
BssECI	CCNNGG	2 cut(s)	545, 546
BssMI	GATC	6 cut(s)	197, 250, 343, 616, 625, 667
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	4 cut(s)	31, 110, 262, 394
BstBAI	YACGTR	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	3 cut(s)	204, 588, 690
BstF5I	GGATG	5 cut(s)	130, 134, 214, 356, 640
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	6 cut(s)	200, 253, 346, 619, 628, 670
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	6 cut(s)	197, 250, 343, 616, 625, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	658
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	2 cut(s)	465, 487
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	4 cut(s)	197, 250, 343, 667
BstYI	RGATCY	4 cut(s)	197, 250, 343, 667
BtsCI	GGATG	5 cut(s)	130, 134, 214, 356, 640
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	1 cut(s)	8
CviJI	RGCY	9 cut(s)	47, 184, 241, 444, 478, 544, 577, 622, 652
CviKI_1	RGCY	9 cut(s)	47, 184, 241, 444, 478, 544, 577, 622, 652
DdeI	CTNAG	3 cut(s)	204, 588, 690
DpnI	GATC	6 cut(s)	199, 252, 345, 618, 627, 669
DpnII	GATC	6 cut(s)	197, 250, 343, 616, 625, 667
DraIII	CACNNNGTG	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	545
FaiI	YATR	5 cut(s)	159, 219, 417, 450, 465
FbaI	TGATCA	2 cut(s)	616, 625
Fnu4HI	GCNGC	2 cut(s)	476, 479
FokI	GGATG	5 cut(s)	137, 141, 221, 343, 647
Fsp4HI	GCNGC	2 cut(s)	476, 479
FspBI	CTAG	2 cut(s)	248, 653
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	2 cut(s)	476, 479
GsuI	CTGGAG	3 cut(s)	251, 296, 657
HaeII	RGCGCY	1 cut(s)	9
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	2 cut(s)	405, 454
HindII	GTYRAC	2 cut(s)	405, 454
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	304, 364
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	4 cut(s)	113, 139, 405, 454
Hpy188I	TCNGA	3 cut(s)	279, 437, 538
Hpy188III	TCNNGA	6 cut(s)	19, 350, 368, 425, 505, 674
Hpy8I	GTNNAC	4 cut(s)	113, 139, 405, 454
HpyAV	CCTTC	3 cut(s)	73, 264, 504
HpyCH4III	ACNGT	4 cut(s)	31, 110, 262, 394
HpyCH4IV	ACGT	2 cut(s)	24, 192
HpyCH4V	TGCA	3 cut(s)	90, 292, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	658
HpyF3I	CTNAG	3 cut(s)	204, 588, 690
HpySE526I	ACGT	2 cut(s)	24, 192
HspAI	GCGC	1 cut(s)	6
Ksp22I	TGATCA	2 cut(s)	616, 625
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	6 cut(s)	197, 250, 343, 616, 625, 667
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	2 cut(s)	465, 487
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	248, 653
MaeII	ACGT	2 cut(s)	24, 192
MaeIII	GTNAC	3 cut(s)	25, 388, 550
MalI	GATC	6 cut(s)	199, 252, 345, 618, 627, 669
MboI	GATC	6 cut(s)	197, 250, 343, 616, 625, 667
MboII	GAAGA	2 cut(s)	386, 497
MflI	RGATCY	4 cut(s)	197, 250, 343, 667
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	6 cut(s)	75, 151, 298, 318, 428, 568
MnlI	CCTC	7 cut(s)	108, 199, 357, 501, 616, 670, 681
MseI	TTAA	3 cut(s)	12, 317, 453
MslI	CAYNNNNRTG	3 cut(s)	23, 191, 386
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	1 cut(s)	658
NdeII	GATC	6 cut(s)	197, 250, 343, 616, 625, 667
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	3 cut(s)	25, 388, 550
NspV	TTCGAA	1 cut(s)	72
OliI	CACNNNNGTG	1 cut(s)	23
PasI	CCCWGGG	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	304, 364
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	477, 480
Ppu21I	YACGTR	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	60
PsuI	RGATCY	4 cut(s)	197, 250, 343, 667
PvuII	CAGCTG	1 cut(s)	478
RseI	CAYNNNNRTG	3 cut(s)	23, 191, 386
SaqAI	TTAA	3 cut(s)	12, 317, 453
SatI	GCNGC	2 cut(s)	476, 479
Sau3AI	GATC	6 cut(s)	197, 250, 343, 616, 625, 667
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	72
SmiMI	CAYNNNNRTG	3 cut(s)	23, 191, 386
Sse9I	AATT	6 cut(s)	75, 151, 298, 318, 428, 568
SsiI	CCGC	2 cut(s)	632, 642
SspMI	CTAG	2 cut(s)	248, 653
StyD4I	CCNGG	1 cut(s)	545
TaaI	ACNGT	4 cut(s)	31, 110, 262, 394
TaiI	ACGT	2 cut(s)	27, 195
TaqI	TCGA	2 cut(s)	36, 72
TasI	AATT	6 cut(s)	75, 151, 298, 318, 428, 568
TfiI	GAWTC	2 cut(s)	304, 364
Tru1I	TTAA	3 cut(s)	12, 317, 453
Tru9I	TTAA	3 cut(s)	12, 317, 453
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	3 cut(s)	25, 388, 550
TseI	GCWGC	2 cut(s)	475, 478
Tsp45I	GTSAC	3 cut(s)	25, 388, 550
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	399
Van91I	CCANNNNNTGG	1 cut(s)	229
XapI	RAATTY	3 cut(s)	75, 298, 428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	2 cut(s)	248, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.