Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Forward (+)

1894676 .. 1895700

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGTGCCGTCAACCTTACAAACGTCGCCGTTCTGGACAATCCGGCCGCATTCCTCAGCCCTTTTCAGTTTGAAATCTCGTACGAGTGCTTGACTCCCCTCAAAGACGACTTGGAATGGAAGCTGATATATGTGGGATCTGCTGAAGATGAAACTTATGACCAAATGTTGGAGAGTGTGCTTGTTGGTCCTGTCAATGTTGGCAACTACCGTTTCGTCTTTCAGGCAGACCCTCCAGATCCATCAAAAATACGCGAGGAAGATATCATCGGTGTCACGGTACTGCTATTGACATGTTCTTATCTGGGGCAGGAGTTTGTTAGGGTGGGGTACTATGTGAACAATGATTATGATGATGAGCAGCTGAGGGAGGAACCTCCCTCTAAGGTGTTGGTTGATAGGGTTCAGAGAAACATTTTAGCGGACAAGCCGAGGGTCACAAAGTTCCCCATTAATTTTCATCCCGAGAACGGTGAGAACGCGGGGCAGCAGCCCCCACATTCACCTGATCACTTAACTGAAACAAAGCAGCCCCTTCCTTCTCCCGATTGTGCAGCTGGAGAAAACATCAAGGGAGAAGAACCACCCGTCTCACCTGTACCATCTGTCCGTGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

207

Amino Acids

23.04

Weight (kDa)

4.41

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccII	CGCG	2 cut(s)	255, 482
AciI	CCGC	3 cut(s)	48, 422, 482
AclWI	GGATC	2 cut(s)	145, 233
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	4 cut(s)	83, 282, 332, 600
AfiI	CCNNNNNNNGG	2 cut(s)	169, 470
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	3 cut(s)	124, 364, 557
AluI	AGCT	3 cut(s)	124, 364, 557
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	2 cut(s)	145, 233
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	5 cut(s)	361, 487, 490, 529, 554
AseI	ATTAAT	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	3 cut(s)	485, 495, 585
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	188
BbvCI	CCTCAGC	2 cut(s)	56, 365
BbvI	GCAGC	5 cut(s)	373, 499, 502, 541, 566
BccI	CCATC	2 cut(s)	250, 610
BceAI	ACGGC	1 cut(s)	14
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	595
BisI	GCNGC	6 cut(s)	48, 362, 488, 491, 530, 555
BlsI	GCNGC	6 cut(s)	49, 363, 489, 492, 531, 556
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	375
BpmI	CTGGAG	2 cut(s)	219, 579
Bpu10I	CCTNAGC	2 cut(s)	56, 365
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 470
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	169, 470
BseMII	CTCAG	2 cut(s)	70, 356
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	5 cut(s)	373, 499, 502, 541, 566
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	2 cut(s)	255, 482
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	44
BsiWI	CGTACG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	169, 470
BsmAI	GTCTC	1 cut(s)	595
BsmBI	CGTCTC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	464
Bsp143I	GATC	3 cut(s)	137, 238, 508
BspACI	CCGC	3 cut(s)	48, 422, 482
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	69, 357
BspFNI	CGCG	2 cut(s)	255, 482
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	2 cut(s)	145, 233
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	137, 238, 508
Bst4CI	ACNGT	3 cut(s)	212, 280, 473
BstDEI	CTNAG	3 cut(s)	56, 365, 384
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	2 cut(s)	255, 482
BstKTI	GATC	3 cut(s)	140, 241, 511
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	3 cut(s)	137, 238, 508
BstMCI	CGRYCG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	297
BstUI	CGCG	2 cut(s)	255, 482
BstV1I	GCAGC	5 cut(s)	373, 499, 502, 541, 566
BstX2I	RGATCY	2 cut(s)	137, 238
BstYI	RGATCY	2 cut(s)	137, 238
BstZI	CGGCCG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	4 cut(s)	82, 281, 331, 599
CviAII	CATG	1 cut(s)	294
CviJI	RGCY	8 cut(s)	47, 60, 124, 364, 430, 493, 532, 557
CviKI_1	RGCY	8 cut(s)	47, 60, 124, 364, 430, 493, 532, 557
CviQI	GTAC	4 cut(s)	82, 281, 331, 599
DdeI	CTNAG	3 cut(s)	56, 365, 384
DpnI	GATC	3 cut(s)	139, 240, 510
DpnII	GATC	3 cut(s)	137, 238, 508
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	188
Eco52I	CGGCCG	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	464
EcoRV	GATATC	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	595
FaeI	CATG	1 cut(s)	297
FaiI	YATR	6 cut(s)	130, 132, 159, 295, 336, 351
FatI	CATG	1 cut(s)	293
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	6 cut(s)	48, 362, 488, 491, 530, 555
FokI	GGATG	1 cut(s)	447
Fsp4HI	GCNGC	6 cut(s)	48, 362, 488, 491, 530, 555
GluI	GCNGC	6 cut(s)	48, 362, 488, 491, 530, 555
GsuI	CTGGAG	2 cut(s)	219, 579
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	485, 495, 585
Hpy166II	GTNNAC	2 cut(s)	13, 340
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	4 cut(s)	35, 236, 464, 545
Hpy8I	GTNNAC	2 cut(s)	13, 340
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	545, 549
HpyCH4III	ACNGT	3 cut(s)	212, 280, 473
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	554, 616
HpyF3I	CTNAG	3 cut(s)	56, 365, 384
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	137, 238, 508
Lsp1109I	GCAGC	5 cut(s)	373, 499, 502, 541, 566
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	274, 436
MalI	GATC	3 cut(s)	139, 240, 510
MboI	GATC	3 cut(s)	137, 238, 508
MboII	GAAGA	3 cut(s)	158, 272, 590
MflI	RGATCY	2 cut(s)	137, 238
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	9 cut(s)	65, 110, 243, 250, 360, 364, 387, 391, 426
MseI	TTAA	2 cut(s)	453, 515
MspA1I	CMGCKG	2 cut(s)	364, 557
MspI	CCGG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	50
MvnI	CGCG	2 cut(s)	255, 482
NdeII	GATC	3 cut(s)	137, 238, 508
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	456
NmuCI	GTSAC	2 cut(s)	274, 436
NspI	RCATGY	1 cut(s)	297
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	50
Pfl23II	CGTACG	1 cut(s)	81
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	6 cut(s)	49, 363, 489, 492, 531, 556
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	293
PshBI	ATTAAT	1 cut(s)	453
PspLI	CGTACG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	137, 238
PvuII	CAGCTG	2 cut(s)	364, 557
RsaI	GTAC	4 cut(s)	83, 282, 332, 600
RsaNI	GTAC	4 cut(s)	82, 281, 331, 599
SaqAI	TTAA	2 cut(s)	453, 515
SatI	GCNGC	6 cut(s)	48, 362, 488, 491, 530, 555
Sau3AI	GATC	3 cut(s)	137, 238, 508
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	88
SetI	ASST	9 cut(s)	18, 27, 126, 366, 379, 390, 508, 559, 598
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	3 cut(s)	48, 422, 482
TaaI	ACNGT	3 cut(s)	212, 280, 473
TaiI	ACGT	1 cut(s)	27
TasI	AATT	1 cut(s)	454
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	453, 515
Tru9I	TTAA	2 cut(s)	453, 515
TseFI	GTSAC	2 cut(s)	274, 436
TseI	GCWGC	5 cut(s)	361, 487, 490, 529, 554
Tsp45I	GTSAC	2 cut(s)	274, 436
TspDTI	ATGAA	2 cut(s)	165, 449
TspGWI	ACGGA	1 cut(s)	599
Van91I	CCANNNNNTGG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	453
XceI	RCATGY	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.