Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Reverse (-)

74112568 .. 74113153

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG464100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATGTGAAACTCAATCCTCTTTATGTTTTCTTATGTGTTTTGTTCTCCTGCCAGGCTGACCCTCCAGACCCGTCAAAAATACTTGATGAAGATATCATTGGTGTCACAGTACTGCTGTTGACATGTTCATATATGGGCCAGGAGTTTGTTAGGGTGGGAAACTATGTGAACAATGATTATGATGATGAACAACTGAGAGAGGAACCTCCCCCTAAGTTGCTGATTGATAAGGTCCAGAGAAGCATTTTAGCTGACAAGCCGCGAGTCACAAAATTCCCAATAAATTTTCATCCTGAGAACAATGAACATGAGGAGCCACCCCCTTATTCACTTGATGATGCAACAGAACCAAAGCAGCCCCTATCTTCGCTTGAATTGTGGAGTTTCATATATTTGTGCATTTGTGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

138

Amino Acids

15.9

Weight (kDa)

4.33

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	15 - 98	1.8e-33	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	265
AciI	CCGC	1 cut(s)	263
AcsI	RAATTY	2 cut(s)	275, 286
AfaI	GTAC	1 cut(s)	114
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	377
AjnI	CCWGG	2 cut(s)	54, 141
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	2 cut(s)	275, 286
AspS9I	GGNCC	2 cut(s)	139, 235
AvaII	GGWCC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	370
BciT130I	CCWGG	2 cut(s)	56, 143
BisI	GCNGC	2 cut(s)	263, 359
BlsI	GCNGC	2 cut(s)	264, 360
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	56, 143
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	139, 235
BmiI	GGNNCC	2 cut(s)	207, 318
BmrFI	CCNGG	2 cut(s)	56, 143
BmsI	GCATC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	56, 143
BseGI	GGATG	2 cut(s)	10, 292
BseMII	CTCAG	2 cut(s)	188, 288
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	2 cut(s)	189, 289
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	207, 318
Bst2UI	CCWGG	2 cut(s)	56, 143
Bst4CI	ACNGT	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	197, 216, 297
BstF5I	GGATG	2 cut(s)	10, 292
BstFNI	CGCG	1 cut(s)	265
BstNI	CCWGG	2 cut(s)	56, 143
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	54, 141
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	10, 292
Cfr13I	GGNCC	2 cut(s)	139, 235
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	2 cut(s)	126, 311
CviJI	RGCY	6 cut(s)	59, 141, 254, 262, 319, 361
CviKI_1	RGCY	6 cut(s)	59, 141, 254, 262, 319, 361
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	3 cut(s)	197, 216, 297
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	54, 141
EcoRV	GATATC	1 cut(s)	97
FaeI	CATG	2 cut(s)	129, 314
FatI	CATG	2 cut(s)	125, 310
Fnu4HI	GCNGC	2 cut(s)	263, 359
FokI	GGATG	2 cut(s)	17, 279
Fsp4HI	GCNGC	2 cut(s)	263, 359
GluI	GCNGC	2 cut(s)	263, 359
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	129, 314
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HinfI	GANTC	1 cut(s)	267
Hpy166II	GTNNAC	2 cut(s)	123, 172
Hpy188III	TCNNGA	3 cut(s)	68, 238, 296
Hpy8I	GTNNAC	2 cut(s)	123, 172
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	344, 402
HpyF3I	CTNAG	3 cut(s)	197, 216, 297
Hsp92II	CATG	2 cut(s)	129, 314
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	41, 64, 68, 81, 128, 155, 251, 309
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	106, 268
MboII	GAAGA	2 cut(s)	104, 360
MluCI	AATT	3 cut(s)	275, 286, 377
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	5 cut(s)	30, 75, 196, 219, 307
MspR9I	CCNGG	2 cut(s)	56, 143
MvaI	CCWGG	2 cut(s)	56, 143
MvnI	CGCG	1 cut(s)	265
NlaIII	CATG	2 cut(s)	129, 314
NlaIV	GGNNCC	2 cut(s)	207, 318
NmuCI	GTSAC	2 cut(s)	106, 268
NspI	RCATGY	1 cut(s)	129
PciI	ACATGT	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	264, 360
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PscI	ACATGT	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	54, 141
PspGI	CCWGG	2 cut(s)	54, 141
PspN4I	GGNNCC	2 cut(s)	207, 318
PspPI	GGNCC	2 cut(s)	139, 235
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SatI	GCNGC	2 cut(s)	263, 359
Sau96I	GGNCC	2 cut(s)	139, 235
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	56, 143
SetI	ASST	3 cut(s)	211, 237, 256
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	235
Sse9I	AATT	3 cut(s)	275, 286, 377
SsiI	CCGC	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	54, 141
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	3 cut(s)	275, 286, 377
TatI	WGTACW	1 cut(s)	112
TauI	GCSGC	1 cut(s)	265
TseFI	GTSAC	2 cut(s)	106, 268
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	2 cut(s)	106, 268
TspDTI	ATGAA	6 cut(s)	105, 120, 204, 281, 321, 379
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	2 cut(s)	275, 286
XceI	RCATGY	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.