Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Forward (+)

56162319 .. 56164182

Gene Structure 1864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGTGCCGTCAACATCACAAACGTCGCCGTTTTGGACAACCCCTCCGCTTTTCTCAATCCGTTCCAGTTCGAAATCTCATACGAGTGCTTGGCTTCCCTCAAAGATGGGCAAAATGCTCGTTTGGTTATGTTTAGGGGAATGGCAGAATCTGTGGCATACCTAGACTTGGAATGGAAGCTCATATATGTCGGATCTGCTGAAGATGAGACGTATGACCAACTTTTGGAGAGTGTGCTTGTTGGTCCTGTCAATGTTGGCAACTACCGTTTTGTATTTCAGGCTGACCCTCCAGACCCGTCAAAAATACGTGATGAAGATATCATTGGTGTCACAGTACTGCTAGGAACCTCCCCTAAGTTGCTGATTGATAGGGTCCAGAGAAACATTTTAGCTGACAAGCCGCGAGTCACAAAATTCCCAATAAATTTTCATCCTGAGAACAATGAACATGAGGAGCCACCCCCTTCTTCACTTGATGATGCAACAGAACCAAAGCAGCCCCTATCTTCGCCTGATTTAGCAACTGAGTCAAACATCACTGCAGAAGAACCATCCCTTCCACCTGTATCATCTGTCGGAAGTGCAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

198

Amino Acids

21.77

Weight (kDa)

4.31

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	1 - 115	2.9e-34	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	1 cut(s)	406
AciI	CCGC	2 cut(s)	48, 404
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	416, 427
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	2 cut(s)	169, 226
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	2 cut(s)	181, 395
AluI	AGCT	2 cut(s)	181, 395
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	202
AlwNI	CAGNNNCTG	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	2 cut(s)	416, 427
AspS9I	GGNCC	2 cut(s)	245, 376
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	245, 376
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	101, 562
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	164, 344
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	2 cut(s)	404, 500
BlsI	GCNGC	2 cut(s)	405, 501
BmcAI	AGTACT	1 cut(s)	339
Bme18I	GGWCC	2 cut(s)	245, 376
BmgT120I	GGNCC	2 cut(s)	245, 376
BmiI	GGNNCC	3 cut(s)	349, 377, 459
BmsI	GCATC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 226
Bse1I	ACTGG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	433, 554
BseLI	CCNNNNNNNGG	2 cut(s)	169, 226
BseMII	CTCAG	2 cut(s)	429, 519
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	511
Bsh1236I	CGCG	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	169, 226
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	194
BspACI	CCGC	2 cut(s)	48, 404
BspCNI	CTCAG	2 cut(s)	430, 520
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	349, 377, 459
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	269, 337
BstBAI	YACGTR	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	357, 438, 528
BstF5I	GGATG	2 cut(s)	433, 554
BstFNI	CGCG	1 cut(s)	406
BstKTI	GATC	1 cut(s)	197
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	433, 554
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	540
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	245, 376
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	7 cut(s)	95, 181, 284, 395, 403, 460, 502
CviKI_1	RGCY	7 cut(s)	95, 181, 284, 395, 403, 460, 502
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	3 cut(s)	357, 438, 528
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	245, 376
Eco57I	CTGAAG	1 cut(s)	222
EcoRV	GATATC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	1 cut(s)	455
FaiI	YATR	8 cut(s)	82, 131, 160, 185, 187, 189, 216, 453
FatI	CATG	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	404, 500
FokI	GGATG	2 cut(s)	420, 541
Fsp4HI	GCNGC	2 cut(s)	404, 500
FspBI	CTAG	2 cut(s)	164, 344
GluI	GCNGC	2 cut(s)	404, 500
GsuI	CTGGAG	1 cut(s)	276
Hin1II	CATG	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	149, 408, 530
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	194, 581
Hpy188III	TCNNGA	3 cut(s)	293, 379, 437
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	477, 569
HpyCH4III	ACNGT	2 cut(s)	269, 337
HpyCH4IV	ACGT	3 cut(s)	24, 212, 310
HpyCH4V	TGCA	3 cut(s)	485, 545, 587
HpyF3I	CTNAG	3 cut(s)	357, 438, 528
HpySE526I	ACGT	3 cut(s)	24, 212, 310
Hsp92II	CATG	1 cut(s)	455
Kzo9I	GATC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	8 cut(s)	80, 261, 266, 306, 392, 450, 528, 579
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	2 cut(s)	164, 344
MaeII	ACGT	3 cut(s)	24, 212, 310
MaeIII	GTNAC	2 cut(s)	331, 409
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MboII	GAAGA	5 cut(s)	215, 329, 462, 501, 560
MflI	RGATCY	1 cut(s)	194
MluCI	AATT	3 cut(s)	416, 427, 592
MlyI	GAGTC	2 cut(s)	417, 539
MmeI	TCCRAC	2 cut(s)	172, 559
MnlI	CCTC	5 cut(s)	55, 110, 300, 361, 448
MseI	TTAA	1 cut(s)	595
MslI	CAYNNNNRTG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	406
NdeII	GATC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	3 cut(s)	349, 377, 459
NmuCI	GTSAC	2 cut(s)	331, 409
NspV	TTCGAA	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	405, 501
PleI	GAGTC	2 cut(s)	416, 538
PpsI	GAGTC	2 cut(s)	416, 538
Ppu21I	YACGTR	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	349, 377, 459
PspPI	GGNCC	2 cut(s)	245, 376
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	595
SatI	GCNGC	2 cut(s)	404, 500
Sau3AI	GATC	1 cut(s)	194
Sau96I	GGNCC	2 cut(s)	245, 376
ScaI	AGTACT	1 cut(s)	339
SchI	GAGTC	2 cut(s)	417, 539
SetI	ASST	8 cut(s)	27, 165, 183, 215, 313, 353, 397, 568
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	2 cut(s)	245, 376
SmiMI	CAYNNNNRTG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	416, 427, 592
SsiI	CCGC	2 cut(s)	48, 404
SspMI	CTAG	2 cut(s)	164, 344
TaaI	ACNGT	2 cut(s)	269, 337
TaiI	ACGT	3 cut(s)	27, 215, 313
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	416, 427, 592
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	595
Tru9I	TTAA	1 cut(s)	595
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	331, 409
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	2 cut(s)	331, 409
TspDTI	ATGAA	3 cut(s)	330, 422, 462
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	547
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	245, 376
XapI	RAATTY	2 cut(s)	416, 427
XspI	CTAG	2 cut(s)	164, 344
ZrmI	AGTACT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.